Array 1 8169-6286 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMYG01000003.1 Streptococcus salivarius strain BIOML-A13 scaffold3_size328593, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8168 36 100.0 30 .................................... AAAAGATCAAGTTCTAGTGGCCACTCAACT 8102 36 100.0 30 .................................... ACTAGGCAAGTATATCAAGCCTAAGTGTTA 8036 36 100.0 30 .................................... ATGCTAAAGTATACACTATGGAAGACTATG 7970 36 100.0 30 .................................... CATTCTACTTTGTTAGCATTATAGCGTTGT 7904 36 100.0 30 .................................... AGAAATTCAGCATAATTCTGATGATAATTA 7838 36 100.0 30 .................................... GCTTTAGCAATAGCATATACATAAGCACTA 7772 36 100.0 30 .................................... TAAAATGGTCTACAATCAATTCTAGACCCT 7706 36 100.0 30 .................................... CGAAACTCACCACGGTATCGGTAAGGCTCG 7640 36 100.0 30 .................................... GTTAGGGAAATTAGCTACCACAACCCCAGA 7574 36 100.0 30 .................................... CGTGGTGTTATCTGTCACGCTATCAGCTTT 7508 36 100.0 30 .................................... TTATGATTTAGCAGATTTTGAAAGCATTCC 7442 36 100.0 30 .................................... CACGCGCAACTTTAAGGATAGCCATGAGCG 7376 36 100.0 30 .................................... TATCATCAAACACTAACGACTGTATCTGGT 7310 36 100.0 30 .................................... TCATTACCTAACGTTTTCAAGTTACCAATG 7244 36 100.0 30 .................................... ATTGACTTATTCAATGCTCGGAAGCCGTAA 7178 36 100.0 30 .................................... CCTTGCTGGAGAAATTAGGCTACTCCCTTC 7112 36 100.0 30 .................................... CTCCTGTGACTTTTGTAAACACATCTTCTA 7046 36 100.0 30 .................................... ATAATTAATTAAATAATTGAAGCGGTGGGA 6980 36 100.0 30 .................................... AGTTTCCTCACTAGCTCACTGCTACGGCTA 6914 36 100.0 30 .................................... TTCAAGCTCGAAATTTAGAAAAGGGCTAGT 6848 36 100.0 30 .................................... ATATAATACTGCTAAAAACACCCTCTAAGG 6782 36 100.0 29 .................................... AGTTTCCTCACTAGCTCACTGCTACGGCT 6717 36 100.0 29 .................................... TTCAAGCTCGAAATTTAGAAAAGGGCTAG 6652 36 100.0 31 .................................... AGATAAAATGCGTTGTCCATTAAGGATAAGA 6585 36 100.0 30 .................................... ATATAATACTGCTAAAAACACCCTCTAAGG 6519 36 100.0 30 .................................... ACGTCTCTAATGTAGTTATTTAGATTGTTA 6453 36 100.0 30 .................................... TTCCAAAATGTTACCCCCCTATTAGAAAAC 6387 36 97.2 30 .........................A.......... ATAGGTATTATATGTCCACTTCTCGTTTTA 6321 36 83.3 0 ............AC...............T..CTC. | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.3 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GAATTTTAGTATTCGTCAATAGCTTGTCATATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGACGGATTGGGAGGTTTCAACAATTTGTTTTAGATAAAGATTACATTTTGATGCCCTATAATAACTAGTAATTTGGTAATGAGTATAGATAGTCTTGAGTTATTTCAAGACTATTTTTTTAGTGTTTAGTGTTTCGGTATAAAGTTGAGTAGAAGAATCATTTTGTTAGAGAGTAGATTATAAGGTTTTGATAGAGGAGGAGTTAAATTGGTTGCCATAAGATTCCTAAGAAATACTCCAATATGGTGACAGTGACATTTTGTCTAAAACGTTGATATATATAGCTTTTTAAGGTATAATAAACATAAAAACGGGATCATTTTGAAGCTGAAGTCATGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAAAAAAAGACAGTCTACGAG # Right flank : CTCTTTATAACGATTTTCGGTTGACTTCTCTTCAAACGAATCTTATCATAGAGGAGTATAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGATTTTGGTCGTGGCATTAGGGCAGATTCTTTACCTCTTGCCATGACAAAAGCGTCTGTGTTCTTATCACATATTATTAAGGGGTATGGAGATAAGGCTTTACCTGAGCCGACTGCGGTAAGCAGCATTCCTAATGAGGAAGAACTCGTCGTGTTAATCCAAACAGAGCTTGATTAAGACTAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAAGACGACTAAAATTCCTGCAAAAATTTGTAAATACGAGAAGGGTTCTCCTAAGACGACGACAGCCGCTAGAATTGAGATAATTGTCGAAATCCCAATAAAGGATGCTGTTCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 362651-363543 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMYG01000002.1 Streptococcus salivarius strain BIOML-A13 scaffold2_size544494, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 362651 36 100.0 30 .................................... TGTTGAATACGGAACTGAGCAATGCGTTGG 362717 36 100.0 30 .................................... AATACCAAATGCTTCAAATACTTCAGAAAG 362783 36 100.0 30 .................................... TTTCGCTCGTATGCTTAACCGCTTCGCTCT 362849 36 100.0 30 .................................... TAGCTTGTGGTGCTGTATCTGTTTTCGGTC 362915 36 100.0 30 .................................... TTCTACTAAATTCTGCATTTTAATCCTTTC 362981 36 100.0 30 .................................... TAATCTCTTTGATGTCAGTCCCAACCGCTG 363047 36 100.0 30 .................................... TGTTATTCAGAACTTTGTAAGTAAAGGTGT 363113 36 100.0 30 .................................... GATTGGTCTTTTTCTTGCCGAACAATGACA 363179 36 100.0 30 .................................... CAAATGCTGAAACAGCAACGTCGTTGGTAG 363245 36 100.0 30 .................................... TACTGGTATGACTAACCTTGGTAATGGTAT 363311 36 100.0 29 .................................... AAAACCACCAACCCAACATAAAGGAGCTA 363376 36 100.0 30 .................................... CTCCGGGCTTGCCGTAACTATAATCGTCAA 363442 36 100.0 30 .................................... TATCGCGAATGGTAATAGCATCTTCATCTA 363508 36 88.9 0 .............T...............A....GG | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTATTTCAGAGGAATCTTATGATAGTTTTTATAAGCAAATCAGTCAGATGGTCAAAAAGTATCCAAACTTAACCTTTATCTTATTTCCTAGTGACCAAGGCTATTTAAAGATTGATGAAGAAAATAGCAAGTTCGTGAATATTTTATCTGACCAGGTAGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCAACGAGAGAGGATTTTAGGATGTCCTTAGAGACCGTAACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGCCTCACACTTGTTGATTCTGTAATTTTGAATATTCTAAATCAGCTGTTTCAATTTAATTACCGTATAAGATATTCACAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATGAAAACGTCAAAATTTCATTTGAG # Right flank : GTTGATTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGATTGTCAGGCTGACCAACCTCTTTGACCTCAGTCAAATTAAGGATAGGAAGGCTCTGTTTAAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTCACCCAGGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAATCCGTAAACACCTGAATCGGCGATACAGTGGATAATTCCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCTGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //