Array 1 4295-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYHU01000005.1 Alteromonas sp. KS69 KS69_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4294 29 100.0 32 ............................. CATGTACTCTTTAATAGCGTTAAAATAGCTAT 4233 29 100.0 32 ............................. TCGCCACCCACTACGGCGGTGTAGTCATCGTA 4172 29 100.0 32 ............................. TAATGGTTCGTTTTTACTAGCGTGTGATTGAT 4111 29 100.0 32 ............................. GTGACTTGGTTAAATCTGGCTTACTTCACCCT 4050 29 100.0 32 ............................. CGCTGGCAACGCGTTTGAAAGGTATTGTTTAA 3989 29 100.0 32 ............................. CTTCTATGTGAACAACCCACCCACCCAAAACC 3928 29 100.0 32 ............................. GACTCTGTACTAGGTGACTTATCCGAATGGCA 3867 29 100.0 34 ............................. CGGTTTAATCACATCTTGTCTAACTAACCCCTTC 3804 29 100.0 32 ............................. CCAGTGTGAAATGATTCGTTCATGCGTTCTCT 3743 29 100.0 32 ............................. ATTGTGTTATCACTATCGAATCTACTGCCGAA 3682 29 100.0 32 ............................. GGTAATTCATAATGGCTACTCAAAACATTGTT 3621 29 100.0 32 ............................. AAACCGTCCCAGTTTAACCTTACCTAATGAGG 3560 29 100.0 32 ............................. CCTTGAGCCACACTATCAAGCGCGCTTATACC 3499 29 100.0 33 ............................. TCCGTTAGCTATTCTCGGAACACCCCTACACCC 3437 29 96.6 32 ............................T ACAGCAAATTCCGCTCTGAAACCTCTGTTAGC 3376 29 100.0 32 ............................. TTAGTGCGGGTGATGAGCTACTGCTATTATCA 3315 29 100.0 32 ............................. CCTTTGATTGTGCCGTACCGCCTTAACTTGAC 3254 29 100.0 32 ............................. CACCGCTACCATTGCCCGAACCTTGTGCCATG 3193 29 100.0 33 ............................. GGGGTGAGTGATGAAACGTTATGCCTTTACACC 3131 29 100.0 32 ............................. GTGGAATTGAGTGCGGGATTGTAATTGGCTAC 3070 29 100.0 32 ............................. CCTTTAGTTACCATAACCTCATTGCCGTATGC 3009 29 100.0 32 ............................. ATAACAGCGGGTGGCTTAAGTTAACGCAAGAG 2948 29 100.0 32 ............................. TCCCATCAGGCAAATGGGCAGGTTTACGTTAC 2887 29 100.0 32 ............................. GCATTAAACCATGACAGAGACAGTGACGCTAC 2826 29 100.0 32 ............................. TTTACTTGCTGCTCAATATCGTAACGCTCTAT 2765 29 100.0 32 ............................. CCGATTAAACGAAAAGACCACTATGCACAGAT 2704 29 100.0 32 ............................. GCATAGAAAAGCTAGCGTTGCTGTTGCTGTGG 2643 29 100.0 32 ............................. GCATTCAGAATAAAAAATAAACTTAGCACCTA 2582 29 100.0 32 ............................. ACGCTGCAATGTAGCCTGCCAATGGGCGCATA 2521 29 100.0 32 ............................. CGCCAAAACCACGTCTTTAGCACCAAAAAACA 2460 29 100.0 32 ............................. TTATGAATTTCGTCTTCAGTATCGAAAAGCTT 2399 29 100.0 32 ............................. CCAATGCCCATTCGCTACGTTTGACGCTGAAA 2338 29 100.0 32 ............................. CCTAGCGATTGAAGCGTATCAACGACTCCAAC 2277 29 100.0 32 ............................. AGGCCCCGCCGCCGCCAGGGGCGTAAAGATAA 2216 29 100.0 32 ............................. CTTATTTTCATCCTCGAACATACGTTCAAGCA 2155 29 96.6 32 ............................A GAGGAGAGCGTTTTTAACGTAATCCGAACCAC 2094 29 100.0 32 ............................. CTTTCTTCTGCTGTTGGCGCGCTTTCTGAAAA 2033 29 100.0 32 ............................. CCCACGGTTACTAATGATTACGCTGATTCAAT 1972 29 100.0 32 ............................. CTGGCGTTATGTGTATGATGCTGGAAAAGGAA 1911 29 100.0 32 ............................. TTGTCAGACCCAGAATTTATAAAAAAATTCTT 1850 29 100.0 32 ............................. GGCACCGGCTTTCATGACGTTCGCACAACTGG 1789 29 100.0 32 ............................. GGCAAGAAGACGCGTTAACTGAGGTTCGTTGG 1728 29 96.6 32 ............................T GCCGAGCGTTAATTCAGCGACAGCGGGTAGAC 1667 29 100.0 32 ............................. CCAGCTGGGGCTTAATTAATGGCCTGTGTTGA 1606 29 100.0 32 ............................. ACATTGGAATTAGAACAAAAAATTTCAGAAGT 1545 29 100.0 32 ............................. CTAGGGTCTTGGCTGCGCTGTTGAGCTTCACG 1484 29 100.0 32 ............................. AAACTGAAACCATGGCGAATATTGCCGGGTTA 1423 29 100.0 32 ............................. ACCCCGAAACATACGATCCTACAGATGATTTA 1362 29 100.0 32 ............................. TTTGAGAAATCAGCCGAAGTCTGATACCCAAG 1301 29 100.0 32 ............................. CGCTGACCTCTGGTAATAAATTCAGCGATTAC 1240 29 100.0 32 ............................. CAGGTTTTAAGAAAATAAGTCGTTCATAGAAC 1179 29 100.0 32 ............................. AAATAAAGCTAGAAGAACAACTTTTAGCTGAA 1118 29 100.0 32 ............................. CCATTGCATTTCACTTTGGCTTTGTAGGTTTT 1057 29 100.0 32 ............................. CTCACGCCACCACCCTAAAAGAAAAGCTAACA 996 29 100.0 32 ............................. TTTCAGCGGGGCTCGTAAAAGTCTGGTGGGCA 935 29 100.0 32 ............................. GCGTTTGTTAACCGCCGAGAATTGTTCTTGAT 874 29 100.0 32 ............................. TCCCTGTAGCGTGACCATCACCGCGAGGTTTT 813 29 100.0 32 ............................. ACGTATTTTGGGGTGTATAAGATACGTGAAAC 752 29 100.0 33 ............................. TTTTCAGGAAGCAAGACAATCGGCAAAACCCGC 690 29 100.0 32 ............................. GTTTTTATAACTGCGTTCACTGTTCTCAATGA 629 29 100.0 32 ............................. GCCAAGCTCACGACCCATTTCAATGGCTTCGA 568 29 100.0 32 ............................. GATTAATGGCGCTCACTGCGGGATGCGCGTAG 507 29 100.0 32 ............................. GTAAAACGCTGCAGTGTGTCCGTAATTAAACG 446 29 100.0 32 ............................. TCAATGCGACGAATATTGATTTTTGCATGGGG 385 29 100.0 32 ............................. GCGCCGTTAAAACATCGGCATCGGATCTGGTA 324 29 100.0 32 ............................. CAATCAGACTTAGCTAGGTTGTTATCAATCAA 263 29 100.0 32 ............................. CATGTACAGCGGTATGTAACAATTCCCACTTG 202 29 100.0 32 ............................. CATGTACAGCGGTATGTAACAATTCCCACTTG 141 29 100.0 32 ............................. CTGGAGTGGTTAACCTCAGTGCGTTTCTTTGT 80 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 70 29 99.9 32 GTGTTCCCCGTACCCACGGGGCTGAACCG # Left flank : TTCCGTTGATTGAAGAAGTATTAGCTGCTGGCGAAATCCTACCGCCAGCGCCCGCAAAAGATGCACAACCGCCCGCAATACCAGAGCCAGACTCTATCGGTGATAAAGGCCATAGGAGTAAATAGATTGAGTATGTTAATGGTCGTAACAGAAACAGTTCCGGCTAGACTTAGGGGGCGTTTGGCGGTGTGGTTGCTCGAGGTCAGAGCAGGAGTATACGTAGGTGATGTATCTCGGAAAGTACGCGAGATGATATGGTTACAGATCACAGAATTGGCGGAAGATGGCAATGTTGTTATGGCCTGGGCAACTAATACGGAGTCAGGATATGACTTTCAAACGTATGGTGAAAATCGGAGATCTCCAGTAGATTTTGATGGCTTAAGGTTAGTTAAATTCGCTCCAATAGAATCTGAGACTTGACCTAGTTTGCTCTTTAAAAGTTTGGTAGAATTTTAAAGCTCTTACATTGTTATATAAAACAAGTGTATACGTTTAGA # Right flank : GCGGTGGCACGCTGAACGCAAAATGCCAAAGGAGTGTTCCCCGTACCCACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACCCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 216158-215762 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYHU01000048.1 Alteromonas sp. KS69 KS69_contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216157 29 89.7 32 ...........G...........T.T... GCGTAGAGAGGCAAGTGTTGCGCTTGCTGGGG 216096 29 96.6 32 ...............G............. TGCTAAAAACTTACCCCACGCTAGACGACTTA 216035 29 100.0 33 ............................. CTATCCGCTTTGGGGTAGTAGCCATCGGCTCCC 215973 29 100.0 32 ............................. GCAATAAAACCGTGGGCGCTGAAGAAATAAAG 215912 29 100.0 32 ............................. AGTTCTGGACAACGTGACCAGATTATGCTTAC 215851 29 100.0 32 ............................. GCTGCTAAGAGTGAGCCTGAGTGGACGCATGT 215790 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 97.6 32 GTGTTCCCCGTACCCACGGGGCTGAACCG # Left flank : TTGCCAGTAACCAACGGGGGGGAGCCGACGATGACACGAAAAGCCCACTAGTAGCATA # Right flank : CCCTTAAACGTGGTTTTACGTCGTATAACTTGCAAAGTGAAACGTAAACTTCTAATCATCGGTGTGAATTTCTTTGACGGTTATGATAGTAAAAGGTTACCGACCAAAACCATCAAAACATAACAATTGACTCTGTCACATTACTCTGTCACATTGAATGCATACTTACTCACAGACCACGAGTTCTGTAGGCTTCAGTTTTGTGGAGGAGAATCCCTCTCTCTCCGCCAAATAGAAAAAGCCCCGTTTCTTTGCGAAGAACGGGGCTTTTTTGTGTTTAATGCAAAATGTGTAAAAGCATAAACCATGCATGCATAAAAATTTTAAAACTCAGCTTATTGAAGTACCAAAATTTAAAGCCTCTTCAATGAGCAGATGACACAACCACTACATGAATAAATTTCATGATCTTAATTATCAAAGCGCGGCACCAAGTAGTACAATCGCGTTTTTTATTTCATCATTCGTTAGTAGAGCCGTAAAATGAAATTCTTTATAAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACCCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //