Array 1 48-198 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGIS01000177.1 Escherichia coli strain SI-P044 sequence177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 109 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 170 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCGGGGATAAACCGATTGTTATAATTATTTATTGAAATATCATTCCG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26906-25535 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGIS01000053.1 Escherichia coli strain SI-P044 sequence053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26905 29 100.0 32 ............................. CTTCTTATGGTGCAGCTCGTGCAAATGAAAAC 26844 29 100.0 32 ............................. CACCAGTATCACTTACTTTACGCTTAACTGTA 26783 29 100.0 32 ............................. GCATCTGAGTCAATGTTCGCTGGCGTCAACCC 26722 29 100.0 32 ............................. GATATAAAACTCCGGGGCTTTATTACAACAAC 26661 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 26600 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 26539 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 26478 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 26417 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 26356 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 26295 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 26234 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 26173 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 26112 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 26051 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 25990 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 25929 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 25868 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 25807 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 25746 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 25685 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 25624 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 25563 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //