Array 1 1765-1431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOFP010000105.1 Streptomyces buecherae strain AC563 contig_100_(1..2012)_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1764 29 100.0 32 ............................. GAATCCGGCGTGATCCCGACGTACCGCAAGCG 1703 29 100.0 32 ............................. GGGAAGACGACGCTCAGCGGCGGCATCGCGGT 1642 29 100.0 32 ............................. CGAGGAATCTGAACGGGTTAAAAAACTGGGTT 1581 29 100.0 32 ............................. GCCTACCTGCTCAACCCCGCTGACCTGGAGGC 1520 29 96.6 32 ..............C.............. CAAGCCGGACGGAAGAATGTCATCGGTGCGTG 1459 29 82.8 0 T.............A......T...C.T. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GTGCGGGGGTGCGGGGGTGGCCGTGGGTGACGCTGGCTGTGCCGTCTTGTGAACGGGGTGGCACAGTTGGCGAGTTGGCGGTCCAGCGTTCTTGTCCTTGAGCCTCAGGGTGCGAACGCAGATAGGCTGTGAAGCCTGGCCAGCAAGGGGGCGTTGTGGGCGATCTGCCGAGTTTGAGCGATAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTGTCGCGCGGTAAACCCGCAGGTCAATTGC # Right flank : TGGCGCTTGTCGGGGTCAGTGTGCCCGCCGCCCTGAACTCGGCGCGCTTCCCTGTCCGTCGCCATGACCAAGGCGGGCGCCCAACGCCGCCCCACAACCCTGCTTCGCGGCGAACCTTCCGAGCCGTCGCCGCACTTCAGAGGCGCACGGCGTCGTTCTGCCGGCGGTGAACACATGCCCGGTTGAGCTCGGCGGTCATTACCGTCCAGACGTATGACGACGATAACAACGCGCACGGTCGAGTATCCGGCCGATGGTCTGACGATGGTGGGGCGCCTTGCGATTCCGGCCGGCGTGGGTCGTCGGCCTGCGGTTCTGGTGGGGCCCGAGGGGACGGGGTTGAACGACTTTCAGCGCCGACGGGCGGACGCCTTGGCCGAACTGGGTTATGTGGCGCTGGCCTTCGACTTCAACGGCGGGCGTTGGTTCAGTGACCCCGAGGAGATGTTGGCCTATGTCATGCCTCTGCTTGCCGACCCCGACCGGATGCGGGGCATCGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17014-17713 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOFP010000017.1 Streptomyces buecherae strain AC563 contig_17_(1..36730)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17014 29 79.3 32 TGAT.G.....A................. GCGCGCGCCACCGTCCCCTCCGTCGAGTAGGT 17075 29 100.0 32 ............................. ATGATGAGCAGCGGCGCCAGCACGGCCACCGC 17136 29 100.0 32 ............................. GTGACAGCCGTCGCGTGCGACACCCCGTCAGC 17197 29 100.0 32 ............................. CCGTAGTACGCCTCGGCGAGGATGAGGACGAG 17258 29 100.0 32 ............................. ACGCCGGACATGCTGGAGACGCTGGAGTCCGG 17319 29 100.0 32 ............................. GTCTGCCGCGCGCCGCCGTCGAGGCCGCGCTC 17380 29 96.6 32 .....................A....... TACGCGCAGCTAGCGGAAGCGCTGGCACGCTG 17441 29 100.0 32 ............................. CGCGAGCGCCTCATGCTCCAGCTCGCTGGCCC 17502 29 96.6 32 .........................C... TTCCTGGACACGAACCGCCGACTGGCCGCGGG 17563 29 93.1 32 ...................G..A...... GCGTACGCCGCGTGCCGTGGCCGCCGCCTCCA 17624 29 93.1 32 ............T.....A.......... TTTGCGCGGTCGGTGACTTTGCCGCGGTGTGG 17685 29 89.7 0 ............T....C.........T. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.7 32 GTCCGCTCCGCGCGAGCGGAGGTGTTCCG # Left flank : CACCTGGACGACGGCACCACCCTGGAAGTCACCCGGACCGCCAGCGACGGCACATCCAACGCCAACTCCCTGCTCTACGGCGCCGCCTGGCGAGCAGCCAAGGCGCTCGGATACCGCCGGTTGATCACCTACACGCAGGCCGGTGAGAGCGGCGCATCGCTGCGCGGCGCTGGTTGGCGCGTCCTGGCCCACCGCCCTCCTCGGCCGGGCTGGGACCGTCCCTCCCGCCCGCGGACCGACCACGGCACCGCGCATGTCGCCCGCACGCTGTGGCAAGCCCCCTGACCCGCCCGCTGGCCCTGACCCGCCTCTGCGTCCTCACCGAACGGGAGACTCCGCCATTTCCGAACACCACATCGACCTACTGCAACAGATCGATCATCTCCGCTACCTGGGAGATGAGTTCGCCACCTTGCACACCACCGTCAATGCACTGGAGGCACGACCCGGCAGCGAGTTGCTGCAACGACTGGCCAAGCTGATCGGCACCACCCAGGTGT # Right flank : GACGCCCGAAGTTTCATCTGCACGCAGAGTGACAGCACAAGGCGAGCCTGTATCTCGCTACGACACTCCCCGCCCTAGACCCGGTGGGGAGAATCTGGGGTCATTAAGAGGCGAACCTACTGGTGAGCGGGGTGCGGTAGACGACTTCAAGAAAATCTCTTCGCCCTAACCGCGAGGCAAGTCAACTCGCGAGGCCGAGGTCGATGATCTTTGCCGCTTTCCCGATCGAGCCGGGCATGAGATGGCGGTAGACCTTGAAGGTGACGTCCACACTCTTGTGCCCCATCCACTCGGCGACGTCGGTGATAGGGATGCCGTGGGACAAACAGTTGGAAGCGAAGAAATGGCGGAAGCTGTAGAGCACCATCCCTTCAGGCATGTCAAACACTCTCCGCCTCTTGATCCGCTGCCACTGATTCGACAGGCAGTAGTATGGGAACGTTTGGCGTGGATCACGAGGATGGTGCAGCAGGTACCCCCCGACCGTGCCATGCTTGCCC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCGAGCGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCACGCGGAGATGTTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4181-4819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOFP010000249.1 Streptomyces buecherae strain AC563 contig_234_(1..8978)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4181 29 100.0 32 ............................. GTAGGCAATCCCGGGTGGCGGCGTGCCTCTCG 4242 29 100.0 32 ............................. CCCGAAACCCGCCCGTGGAGGCACTTCGTGAC 4303 29 93.1 32 ........T................C... TCGACCAGCGGGCCGAGGAGATCGAGAGGAAG 4364 29 100.0 32 ............................. CAGGCCGTCGAGCTCGACATCGACATCGCGGC 4425 29 96.6 32 .....................G....... TGCCACGGCTGCAAGGACGGCCCCAGCTACGC 4486 29 93.1 32 .....................G...C... CAGAACCGGTCGTCGTCGTACTCGACGTCCCA 4547 29 89.7 32 ........T............G...C... GAGAAGGAGGCCGCCCTCGCCGAGCGCGTCGA 4608 29 96.6 32 .....................G....... GTCGTACCCCTGTACACCCGGCTGGGCCCGCG 4669 29 96.6 32 .....................G....... GACGTGAAGCCGCTGTACCGGGTGGGCGGTGG 4730 29 93.1 32 ....................AG....... TGGGCGATCCGGTGCTGCCACACCGCGTTCTG 4791 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.3 32 CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : CCGCGACTGGCGCGCGGGCGCCATCCTGGGCGCCACGGCGGCCGGCCTGCTGCCCTGGTTCGCCTACCAGGACCGCACGATCTTCTCCTTCTACGCGGTCGTCTTCATCCCGTTCCTGTGCCTCGCGGTCGCCATGATGCTCGGCGCCATCGTCGGCCCCCACGCCGCCACCGAACGCCGCCGCACCGTCGGCGCGGTCGGCGCCGGCGCGCTGGTCCTGCTGATCGTGTGGAACTTCATCTACTTCTTCCCGATCTACACCGGCCAGGCCATCCCGCTGGAGGCGTGGCGGGATCGGATGTGGCTGGATACGTGGATCTAGCCGGGGTCGGCTGATGGGGGCCGCTGGCGGGGGCCGCCGCCGAGGCCCGCTGGCGCTGGGCGGGCGCGGGGGCGATGGGAGGACTATGCCGGCTTTTCTGGGATTGGCCGATAGGTCGCGATCGGCGAAAGTTGCAAGAAACCGGGCTGTCGCCGGATAAACCCGCAGGTCAATTGCT # Right flank : CATCGACGCTGGCCTCAACTATGGCGGAGCAGCAGCGACGACAGCCGTCGCCCCGACAGGGTGTCAGTGGGATGGTCTACCGTCCGACGCATGGCCACCGATGCGCTCCCGATCAAGCCCGGCGACGTCCGCACGCGCGAGGAGATCAAACCCGTGCTAGGCGGCAGCCTGTACGGCGGCATCGTCCCATCCGACGAGAAGGCCAATGTGCTGCTGTTCTCGGACGCCGAGGCCGGAGCCAAGTACGGCTACTACGACGGCTGGTTGCAGGAAGAAGACGAGCTCGGCCCCATCTTCGAGTACACCGGCGCCGGCGGCGGCGATCAGGTCTTCGAGGGTCAGCGGGGCCAAAAGAACGCCGCGATCCTCAACCACGCCGACAAGGGGCGCACGCTGCATCTCTTCGTCGCGGTGGGCACAGTGTCCGGCAGAAAGACCAAGCGACACCGCTACGTCGGGGCGTTCGAGCTCGACGCGGCCGAACCGTACGTGATGCGGCA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : CTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4473-4139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOFP010000031.1 Streptomyces buecherae strain AC563 contig_30_(1..11644)_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4472 29 100.0 32 ............................. ATGGCGCCGCGCTCCTCCGCTGAGGCCATGTC 4411 29 100.0 32 ............................. TCGATTCGGTTCGTCGGAGCATTCCGAGCGCG 4350 29 100.0 32 ............................. ATCAGCTCGGCGTACGGGAGCGGCACGGCCGT 4289 29 100.0 32 ............................. AGACCGGGCAGCCAGAACCCGGTGACGCAGAT 4228 29 96.6 32 .........................T... ATGCCGCACCAGGCCGGCCGCCTGTACCTCAT 4167 29 86.2 0 ....C.........C......C..A.... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 CTGGTCCCCGCGCGTGCGGGGATGGCCCC # Left flank : CCCGCCGCGTGTACGCGCGGCTACGTACGCTGAGCTCATGGTTGAGAACACCGTGCCCGTACGGGAAGCCCGCGCGCGTCTGGCGGACTACATCAACCGGGCCGAGGAGGGCGTTCCGACCGTCCTCACGCGCGACGGCGTATCGGTGGCGGCCCTAGTCCCGATCTCGGACCTCGAAGCGCTGGAGGAACTGGAGGAAGCGGCCGACGTGTTGTTGGTGCATGAGGCGGAGGCGGTCCTGGCCGAGGGCGGGCCGACGGCGACGATGGCCGAACTGCTGGCGGACCTGTTCAGCGAGCGCGGTGCGGGCGCGGCGTGAGGTACGCGTTCCGGTTCGCCGCGCCAGCTCCACGGCACGTCGGGCGTCGCCGTGGGCCGAATAGCCTCCCCGCCCGAAAGGACCTTGCGTGAGCGATTTGGCGAGATTGGGCGATAGGTCGCGATCAGTGGAAGTTGCAGAAAACTGGGGTTCCGCGCGATAAAGCCGCAGGTCAATTGCT # Right flank : CGCACCCGACAGCGCCCCCGACCTACCGTCACCCCCCGGCGCGCTCCGCCACCCCGAACGCGATCCCGTCCAGAATGTCGTGCTCGCTCACGACCACCTCGCGCGCGCCCGCGCGTTCCATCAGGGCCAGCAGGACGAGCGCGCCCGCGCCGATGACGTCCACACGGCCCGGGTGCATGACCGGGATGGCGGCGCGTTCGGCGTGGGTGGAGTGGAGGAGGCGGTCGGTGATCTCGCGGACGCGGTCGAGTGGGATGACCGCGTGGTGGATGGCGGCCGAGTCGTACGCGGGCAGGTCGAGTGCGATGGCGGCGATCGTGGTGACCGAGCCGGCCAGGCCGACCAGGGTGTAGCCGCCGGCGGCGGGGCGGAGCGGGACCGTCTGCTCGACCGTGTCGAGGGCGGCCTCCACGTCGGCCCGTATCGCGGCGATCTGGGCTTCGGTCGGCGTGCCGGGTTCGGGGACCTGGCCGGTGGCGTCGGCGAGGTGGCGTTCGGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 923-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOFP010000497.1 Streptomyces buecherae strain AC563 contig_459_(1..6010)_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 922 29 96.6 32 .C........................... GCGGTGACGCCCTCGCCATCGCCGTCGCGGGT 861 29 100.0 32 ............................. AACCCGCCCCCACCGGCAGCGCACTCTGAGCC 800 29 100.0 32 ............................. GCGCGACCCCACCAGGTGGTACCCCCTACCGG 739 29 100.0 32 ............................. GCATCGGCCGGTGCCCGCTCTGCGAAGGCCGC 678 29 100.0 32 ............................. CCGCGCTTGACCTGCGCGGTTGCGGGTGCGCG 617 29 100.0 32 ............................. TGCGCCGCGATCCCGCGTGGGCCTCTACGACC 556 29 100.0 32 ............................. GACCGGGGGCCCGGAGGGCGCCCCCAAGGGGT 495 29 100.0 32 ............................. GTCCGGGCGACAGCTACGGGAAAGACAACCGT 434 29 75.9 18 ..........T.GT.C.C..T......A. GGCCGGCGCCGGGTCGAA A,C [407,412] Deletion [388] 385 27 93.1 32 ................--........... GTCGCGCGGATCAGCACGTGGGGGTCGTGAGG 326 27 93.1 32 ................--........... GCCGTGCTCACGTCCCCGGCGGCGGTCCAGAC 267 29 96.6 33 ............................G CCACCGCGCCGTCCACCTCCACGCTGACGACGT 205 27 93.1 32 ................--........... GGCAAGTCGGTGTTCATCGACGTCGTCATGGG 146 29 96.6 32 ....C........................ ATCCGGATGTCGCTCAAGAGCGAGAACCCCGA 85 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 96.3 31 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GCCTGAACTGTCGGAGTCCATCACTGGTCAGCATCAGCGGGCTCAGCGTTGGTGTACGAGCCACGCGGCCCGCGACCATCCCGACGGCCGCCACTTGCGCTACACCGCTCACGTGACTTTGCGGTGGCTGGTCACCCCCGCTGAGGACATCGGGCCGAGTGCTGGGCCGTAGGCGGGGTGGAGAGACGGTCCGGGCTGTCACGTCGGGCGCTGTGGTGTTGGGTGCTGGCGCCTGCGGGTGGGGAGTGCGGTTGGCGGGTGGATGGGGGCCGTGGGTGACGCTGACTGTGCCGCCTTGCGAACGGGGGCGGCGTGGCTGGTGAGTTGGCGGTCCAGCATTCCTGTACGTCAGCGTCGCGTGTGCGAGCGCAGCTAGTCTGTGAAGCCTCGCCAGCAAGGGGGGCACTGTGGGCGATCTGCCGAGTTTGAGCGATAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTACCGCGCGATAAAGCCGCAGGTCAATTGCT # Right flank : CCGCGACAACCCGCCGGCGCGCGTACCGAGTTCCTGGTCCCCGCGCGCGGGGACCAG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9283-9616 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOFP010000484.1 Streptomyces buecherae strain AC563 contig_446_(1..18393)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 9283 30 93.3 31 .............A...............T TACCCACCGTCGTAGACGCCACCAGCACCAT 9344 30 96.7 30 .............................A CGACCGCGGCCGGTTACTCCCCAGCGTCGG 9404 30 100.0 31 .............................. GCACGCATCAGGCGCGTGGCGAGCGTGGTCG 9465 30 96.7 31 .............................C GCGCGAGATCCCCGACCGTGCTGACACTCCC 9526 30 90.0 31 .....................GC......T GGAGGGGTGCGTGCGCTGCACCCCGCGCGGC 9587 30 86.7 0 .....A.....A.............C...T | ========== ====== ====== ====== ============================== =============================== ================== 6 30 93.9 31 CTGGTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : CGCTATCACGAGTACGGCGGTGCCGAGACCCTCGTGGTCGAGCAGGCGCCGACCCCCACCCCGGCCCCGGCGAGATCCGCGTCCGGGTGGCGGTGGCCAGCGTCAACCCCGTCGACCGGAAGGTACGTTCCGGCGCGGTACGCGAGCTGCTCCCCGTGGACCTGCCCGCGAGCCCCGGGCGCGACGCCGTGGGCGTGGTGGACGAGATCGGCGCGGCCGTACGGGGCATGAGCGTCGGCGACCGCGTCTCCGGCCTCGGCGGCGTCACCGGCGCCACCACCGAACTGGCCGTCCTCTCCGCCTGGGCCCACGCCCCGGCCACCTCGAGGGCTGGGTGTCGTTGCGTGGCGGCTTCGCGCATGGGGGTGGGGATAGCCTGGGGAGTCTGGTGAGTGAGGGGGAGTGTTGTGGGTGTTCTGCGGAACTTGGGTGGTAGGTCGGAGTTCGTGGAAGTTGCAAAAAACCGGGGTGGCGCGCGGTAAAGGTGCAGGTCAGTTGCT # Right flank : TTCATCATTGGCAGGGCCAAGCTTGTCAGCGCCTGCTCCCCGTGCGGAGATAGTCATGCGAGGACCCGAGCCTGGCGTCTCGTATTCGCCCCCGTGCAGGCAGACCAGCGAACTACGAGCCCGAAACGAACGCCTTCGCCTCGGCGAGCGCCGCGTCCCACGGAAACGGACACTTCCGGCCCGGCTCGTTGGGAACGAACCCGCCGTCCCCGTACAACACGCTGACCCCTACCGCACGCAGCTCCGCGACGGAGCGTGCGAACTGGGGATGCTGGGCGTACGCCGAATTCACGCACGGCATCGTGATCAGCGGAATGCCCTTGCCGATGCCCTCGGCTACGACGCCCACCGGAAATGACGAGATCAACCCCAACGCCCAGGCGTTGATGCTGTTCATGGTGATCGGGGCGAACAGGATGGCATCGGCTCTGGGCCAGGCATCAGCCTCACCCGGGCGCTTGTACCGAGACCGTACGGGGTAGCCGGTCAGCTCTTCCAAC # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13047-14043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOFP010000484.1 Streptomyces buecherae strain AC563 contig_446_(1..18393)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 13047 30 100.0 31 .............................. GCCTCCACGCCCGTCGGCGCGCCGCCGTGGC 13108 30 100.0 31 .............................. GCGCCTCGTTGTCCTGGAGCAGGTCGATCGC 13169 30 96.7 31 .............................G CCCGGTGCACGCTCCGCGTCACCGTGTGGCA 13230 30 96.7 31 .............................T GGGCGGCGAGCGACGAGCGGTGCCCGTGTGG 13291 30 96.7 31 .............................G ATCACGGCATGGACGCGATGCGCTACATGGT 13352 30 93.3 31 ................G............G GCGCGACGGCCCCGCAGCAGGTTCCCGGCCA 13413 28 90.0 32 ................--...........T CGGGGAGAGGGTCGCGATCCTGATCCCACGCG 13473 30 93.3 31 ................G............G TCACGATCGGGGGCGGCGGCATCCTGCAAGT 13534 30 96.7 30 .............................A TCCACGTCGCCATTTCGGGCGCGCGGGCGG 13594 30 93.3 31 ......................C......G CCAAAGAGGGTCTGCGAATTCGGCGACAGCA 13655 28 90.0 31 ................--...........A GGAAGGGGCGGACGATCAACGACCGTCCGCC 13714 30 93.3 31 ................G............G CTGAACTGGCGCGCTGCCCCGACGTGCTGAT 13775 30 100.0 26 .............................. GCATCAACCAGACGATCTTCGATCTC 13831 30 86.7 31 ......T..C..........A........G TGATCCTGAGCAACACCGAGACGCTTGGCCG GGT [13838] 13895 28 80.0 31 ....GT..........--...T.......G TCGTCGCGACCACCTTGCCTTCGAGCCGCCC 13954 30 76.7 31 ..A.C.......TA.....C.....G...A ACTCCGCAGCATCATCCGAGACGGAGCCGAC 14015 29 83.3 0 ................-....TG..C.G.. | ========== ====== ====== ====== ============================== ================================ ================== 17 30 92.2 31 CTGGTCCCCGCGCGCGCGGGGATGGACCCC # Left flank : AGATGAACCTGGCCCCTGATCCGGCAGCCGAGCCGTACACCGTCCGCGCCACGTGCCTTACCTGCGCCGACCAGTCACCGCAACCCGAACCCTCGGAGTCCATCACCGGCCAATACCAGCGGGCTCAACGCTGGTGTACGAGCCACGCGGCCCGCGACCATCCCGACGGCCGCCATCTCCGCTATACCGCCCACGTCACCCTGCGGTGGCTGGTCACCCCCGCCGAGGACATCGGGCCCATCGCACCGTAGGCGAGTGGAGGCGGGGCGGGTGATGAGGCGTGCAGGCGCGCGACTTGGTGAACCGTCCATCGATGGCCACGCTCCAAGAGGCTGCTGTTGGCGTCCGGTTCACGTGCGGAGCGGCTTGCGGATACGCTGCGAACACCGTCTTGCCGGGAGGTTGAGGTGAGCATTATGTCGAACTTGGGTGATAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTGCCGCGCGATAAACCCGCAGGTCAATTGCT # Right flank : CCGCCGACGGTGGCGGCAGCAACAGGCACAGGAAGGCTGTCGATGGCCAGCCCGCGTGGGACGAGCCGACACACATGGCCGCTACCCTGCCCGCATGATTCGAGCGGTGGTCTTCGACGTCGGGGAATGCCTCGTCGATGAAACGCGGGAGTACGGCACCTGGGCCGACTGGATCGGCGTGCCTCGACACACCTTCGCGGCGACGTTCGGCGCGGTCATCGCCCAGGGCCGGGACTACCGGGAGACCTTCCAGGAGTTCCAGCCAGGCTTTGACCTCTACGCCGAGCGTGAGCGTCGCGCTCAGGCCGGCCAGCCGGAGCACTTCGGGGAAGAAGACCTCTACCCGGACGTACGGGCCACGCTGCGCCAACTCCGCGCCCACGGACTGTGGTTGGGCATCGCGGGAAATCAAACCGTGCGAGCGGGCAAGATCCTGCGCCAGCTTTTCACCGATGACGTGGATCTCATCGGCACTTCGGACGACTGGGGTGCTTCAAAGC # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 18135-18345 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOFP010000484.1 Streptomyces buecherae strain AC563 contig_446_(1..18393)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 18135 30 96.7 31 .............................G GGTTGGTCAGGGGCGGGTGGCGGCGAAGTAG 18196 30 100.0 31 .............................. GCACGTCATCTGGCGCCGCATCGGTACCCAC 18257 30 100.0 31 .............................. CAGCGGCGGACTTCGGCGCCGGCTTCCGCAT 18318 28 90.0 0 ........--...................A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 96.7 31 CTGGTCCCCGCGCGCGCGGGGATGGACCCC # Left flank : CCCACAGGTCGACGTCAACGAAATCATCGTCCGCCCGGCCGCGAGTGCACAGTGAGTCTCAGTGGTGGTGTTCGTGTCGCCCGTGGGCGATGTCGACCGCGCTGATGCTGGTCTGCACGGACTCGCCCCGGCCCGCCTCGTGACACGCGACTTTCTGAGGGACGGGAGCCTTGGCGCTACGTCGTGGCGGGTCCAGCCTCCTCGCCTCGGTCGCCGGTTCGTACGCCGTCCAGGTTTGCGTGCTGTGCCTGGCCTGACGCATGTCGCGTCAGCGGGCGGCCGAGTGAACCGGGCACCGCCAGCAGGCAGTTGTGTGCCTCTGAGGGCGCGATAGGTGTCGGCAGTCGGGCTGCTTGTGGGGGTGACCTGCGGATAGGCTGCGGGGGCTGGCGCGTCAGGAGGTTGAGGTGAGCAATATGCCGGGCTTGGGTGATGGGCCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTGCCGCGCGATAAACCCGCAGGTCAATTGCT # Right flank : TCTGCAACAGGGTCGACAGGAGTTCGGTCGGCTGGTCCCCGCGCGCGG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 671-992 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOFP010000542.1 Streptomyces buecherae strain AC563 contig_501_(1..1036)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ====================================== ================== 671 22 100.0 37 ...................... ACCAGGTCGAGGTCGTGCATGTTGGCGCCGAGGAGGA CA [684] 732 22 95.5 37 G..................... ACGAGCAAGGTGAGGTCTTTGGCCTAGCGGAGGACTC 791 22 90.9 38 G..................C.. GGACCAGACGCGCGGAGACGGCAGAGCCTCGGGCAAGC 851 22 100.0 36 ...................... ACCAGGAGCTGGGCGGCTCGGTCCAGGGCTCGCAGT A [855] 910 22 86.4 38 A..A...............C.. GGACCAGCGAGCGCGGCTACTCGGGCTCGGGGAAGAAC 970 22 100.0 0 ...................... | A [974] ========== ====== ====== ====== ====================== ====================================== ================== 6 22 95.5 37 CGGGCCATCCCCGCGCGCGGGG # Left flank : TCTACCGCTTCGGGAGCCACGAAGCGCAACTCTGTTGACTCGTCGGAGATGGTCAGTGTTCCGCCAAGCACGCGCGCGGTGAAACAGACATTGAATTGCCGCCGTACCTCGCCGTCCGTGTACGCGATGACGTGGCGTGGGTCGGTGTACGTGCCCACCAACCCGGTGATCTCCACGTCAAGGCCGGTTTCCTCCTTGACCTCGCGTACCGCGCACCCGGGCAGGGAGTCGCTCATGTCCATGCCCCCGCCGGGCAGTGCCCACAGCTCGTTATCCCGACGACGCTGGAGCAGGATGCGCCCCTCATCGTCGGTTACCACGGCGGAGGCCGCCACGACCATGCTGTTCGGTGCGGGGGCGGTCGGATCGTCGTAGTACTCGGTACGGGCCAAAGCTAACCCTCCTGACGGAGCGGAACGGCGGACTTCCAGATGGCCGCGAAGCTGTCGGCGTACGTGTCGAATATGCCTGCCTTGCCGGCGCCGGTCTGGCGCGAGCGC # Right flank : ACCAGGGGACAGCGTCTCCGACGAGATCGCCGCCACCGGGACCA # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:-0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGGCCATCCCCGCGCGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [1,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 4123-3850 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOFP010000498.1 Streptomyces buecherae strain AC563 contig_460_(1..4362)_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4122 29 100.0 32 ............................. CGCTACCAGGGCCAGTACGGCCCCACAGAGTC 4061 29 100.0 32 ............................. AGGTCCACCGAGGCGGGCTGGACCCGCTCCGG 4000 29 100.0 32 ............................. ACGTCGTCCCAGTTCAATGGTTCCGGCGGTTG 3939 29 100.0 32 ............................. CTCGACATCGACCACATGGTGCCCCTGGCCGA 3878 29 96.6 0 ..........................G.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 CTCTGGTCCCCGCGTGCGGGGATGGCCCC # Left flank : GGGCGGGGGCGGGGAGCGGGAGGCGGAGTGAACTTCCGTACGCGGCCGGGGTGATGATGGTTGGCTAGCGGGTGCCGGTTCCGTGCGGACCATGGGGTGTGCTGGACGGCCGATAGCCTGAGCGAGGACCGAAGAACGCGAGGTTGGCGCGCGATATGGTGTCGGATGTACGAGATGTCGGGATCGCAGGAAGTTGCAAAAAACGAGGTGGGGTCCCGGTAACGTCGCAGGTCAATTGC # Right flank : ACTTCCAGCTCGACGGCTTTCCCCAGCTCGTCTTCTGTCCCCGGAGGGTGGCTGCTCGCCAGTCCCCGCGCGCCACTGCGACTTCCATCGGGCGCCGCGCCTCACATGGTCCTATCCCGATGCGCTCGCTGTCTGTCATGCCAGCCGTCGATGGCGGTGACGCGAGCCAACGCTGCTTGGTGTTCGTCCTCCGACACGACACCGTGCTCCACTTCGAGGCGTGCGGCCAGCTCGCGCAGTCGGTTCATGTCGTCCTGGTGAGCAGCGGCGGCAGCGATGTAGTCGGTCACCCCGCGCGCGCCGGGGCGTAGTTCAATCGATGCCACCGACTCTTCCGGCACGGTGATGGTGATCTTTCGAGCAGCCATACGTTGAGGATGCCATGTGATGTCGAGCTTGCAATCGGCGTAAGACATACACGTACCGGCGACACAGAGAGAGCTGATGCATCACAGCACGTGGAGGATGCGTCGGGCTCGGAAGCTCGCGGGTGAGGCGGT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGGTCCCCGCGTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.30,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 255-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOFP010000543.1 Streptomyces buecherae strain AC563 contig_501_(1085..2551)_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 254 29 100.0 32 ............................. GTTGAGATCGTCGAGCATGTTCGCGGTGAGGG 193 29 96.6 32 ............................T GGGCCGTCGGCCGTGTTGGCGAGCTCGAACAG 132 29 100.0 32 ............................. AAGAAGATCCCCGGGTCCTGGTACGTCGACCT 71 29 96.6 0 ................G............ | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GCACGCGCTCGATACGTACGGACGACGCACTGAACACCGACAGCAACTTGCCGTCAACAGGCGCCGGAAGTCGGGCCAGCCGTTGGGCTGCTGCTTCAGCGGTCCGCATCATCTCGTCAGCCGTGTCGTAGTCGTCGCTCCGGGCGTACGAGGTGGCCGCTGACATCAGAAGGCCGCCCCAGACTCGGATGCCTTCGACGGTCTGTGCGTGGCTCCGCTCCACCTCGTCGCCGGCGTACACGGCCACATGGTTCACCGGGAACGGGCCTACCACGCCGGCGTCGCGCACTAGGTGCTGGGCCCAGCTCTCGACCCGCGTCGGCTCACATCACGATGGACATGGCACTACTCATCGAGGTCTGCATCACAGCGCTAGGCTGAACAGCCTTCCCGCTCGAGGGGCCGGCATGGGCAATTCATCGACTTTGGGCGTTAGGTCGCGATCAGTGGAAGTTGCAGAAAACCGGGCCCCCGCGAGATAAAGCCGCAGGTCGATTGCT # Right flank : CCAGGCCGTCAACGCAGACAAACTGGGCGGCTCCTGGTCCCCG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3132-2920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOFP010000583.1 Streptomyces buecherae strain AC563 contig_538_(1..8812)_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3131 29 96.6 32 ...........A................. CTGTCGCCGGCGCACCGGGGGATCATGGACGG 3070 29 100.0 32 ............................. GTGCAGCTCATCGATGATCCCGCCGTGGACGT 3009 29 100.0 32 ............................. CGTGGGCACCCCGGAGGAAGGTGGAGGAGCAG 2948 29 75.9 0 .......T............A.CTC..TT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 CTGGTCCCCGCGCGTGCGGGGATGGCCCC # Left flank : GATCCGGAGGCCACGCCGTACACCGTCCGGGCCAGGTGTCTCGCGTGCGACGACCTGTCTCCGGAGCCCGAGCCGTCGGAGTCCATCACGGCCCAACACGAGCGCGCGCAGCACTGGTGTACGCGCCACGCGGCCCGCGACCATGCGGACGGACGCCACGTCCGCTTCGCCGCGACGGTCACCTTGCGGTGGCGCGTGACGCCTGCTGAGGACATTGGGCCGGTGGCGTTGTGAGGGGTTGTGGGGGTGTAAGGGTGTGGGGGCGCCTGGTCGGCGAGTTGCGGGTGACCTGCTGTGGGTGGCTTGCGCTCGCTGGCCTTCGCTTCGCGATCGTCGGAACGCGTCGTATCGGCGGGGTTGGGCGATAGCCTGGTGGGCCTGCTTAGGGGCGGGGCGCCTTGGGTGAGATGTCGTGGCCATCGCTTTCGGGCGAAAGGTCGGAGTTCGCGGAAGTTGCAGAAATCCGGGGCTCGGCCTGACAAACCCGCAGGTCAATTGCT # Right flank : GCGAGGCCCGATGGCTGCGCGTGGCTGAGATCAATCCAGCCCGCACACAGACACCACTCCCTTGATAGCTCAGGCAGGCAGAGCACCCGGTGGCGACTTCACCGGAAGGTCCCGGTTCGAGTCCGGGTAAGGGAACTGCTCGCTCTGGCTCTGTGCACCAGCACGGTGCATGACCGGGGCCGGTCGCGAGTGCACGACGGGAAGCGACATCAAGGAGGAAACAAGTGACTGCGATTGTGCCCCCGGTTCCCTTCGGTCTTGAGCACCTGGTCTCTCCGCCCCCGAACACTTCGGAAGCCCCGGTCATCACCTACAGCGACGCGCTTCAACTGAACGTCTCGGCTGCGGGGAATCCGTGGCACGCCGAGGCCGCGAACAAGCCGGAGACGCAGACGGAGACGAGCAACGGCGACGGCTCGTCCCCGGGCTCCGACAGCGGCACGGACCTCTACTGACCCATGCGGACAATCCTCATCCTGACCGGCCGTGACGACCTGACG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 941-127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOFP010000623.1 Streptomyces buecherae strain AC563 contig_577_(1..4145)_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 940 29 100.0 31 ............................. TGGTCGAGACCACGGCGATGCCGGACAACCA 879 29 96.6 32 ..............C.............. ATCTTTCGTCCGGCGCCGGGTTCATCGCTCTT 818 29 93.1 32 ..............C.G............ GCCCGGTGCACGCTGCGCGTCACCGTGTGGCA 757 29 96.6 32 ..............C.............. AGCTCGCGGTAGAACTCCACGCGGCGGCCGCC 696 27 89.7 32 ........--....C.............. GAGTCGGCGTCGACCGCCGAATCGCCGTTGAT 637 29 96.6 32 ..............C.............. AGGAGGGCGGCGGCGGCGCCACCGCCGATCAG 576 27 89.7 32 ........--....C.............. AGGGTTCGGATGACGACCTGAATGCGGTAGTA 517 29 100.0 32 ............................. GGGATTCGGACTACGGCCTCGTGGTCGGGGAT 456 29 100.0 33 ............................. TCGGCGACACCGGTTTCTTGTCCGGCCGGCTTG 394 29 89.7 32 ...A.......A..C.............. GGTCCGCCCGCTGTCGCCCCGCTCCAGTTCGC 333 27 89.7 32 ........--....C.............. GCACCGCCTGCCGCGTGCCCGTCCCCACCACC 274 27 86.2 32 .............--........AA.... CAGGCGTCGCCCGCGAAGGTCGCCGAGCCGAA 215 29 86.2 31 .C......T..A............C.... GAGGCCGCCACGACGGCGGAAGCGGGCTCGC 155 29 65.5 0 ...A.......A..C.G..CTTACC.... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 91.4 32 CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GACGCCGTGGCCCCGCCCGAGAGCGGGAGCAGCTCATCGAGAGGGCCCGAGCACCAGGACCGCGCCGGCGGAGGAGGGCAGGAGACGGCTACTGGAGAGCGACGATGTGGGTTTGGGGGCTATCGCCACGGTGATGTCGCGATGGACGACGACCGTACGGGCCTCGGCCGTGTCGGCGTTGAGTACGCATCGGCGCGATGGGGCTCGCCGCGTTTCGGGCAGTCACCCACGCGCGCATGCTGTCGCGCGTCAACACGTTGAACGGTAGAGCGGCGTTGGTTCTCACCCACGAACCCGACTCTCGATCGGATCGACTCATCATCATGGTGAGCGTGGCACTGCTCATCGGGGAAGCTGCTGAAGCGCAACGCTAGGCTGAACATCCTTGCTCGCCGGAGGGATATGACATGGGCGATTCGTCGTGGTTGGGCGATAGGTCGCGATCGATGGAAGTTGCAGAAATCCGGGGTCTCGCGCGGTAAAGCCCCAGGTCAATTGCT # Right flank : CAGCACCGACAGCCCCAACCACCCACCCGCCGGCGCGGCGCGCCCCCACCGAAGGCCAGCGAGCCGCCAGCGACGCGCCGCACCCCCGGGCACCCCGAGCCGTGTACGCGGGGGGCCACCTCAGCCC # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //