Array 1 182691-183318 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTBA01000010.1 Pseudomonas aeruginosa strain PA-W8 IPC4_10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 182691 28 100.0 32 ............................ GCAGTCCAGCCGCCGAACTGGACCCCGCCCGA 182751 28 100.0 32 ............................ ACTGGAAGAACTTCACAATACCGGAGACAAGC 182811 28 100.0 32 ............................ GAGAAGACGCAACAGATCAGGGCGTCGATCCG 182871 28 100.0 32 ............................ GAGCAGGTTCAGCCGGCTGTTGCGCCTGGTGC 182931 28 100.0 32 ............................ AGTACCACCGCCCTCCCCTGAGCCGTCACCAC 182991 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 183051 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 183111 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 183171 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 183231 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 183291 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 193051-192184 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTBA01000010.1 Pseudomonas aeruginosa strain PA-W8 IPC4_10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 193050 28 100.0 32 ............................ ACCCAGGACGCCATCCGGCGCATGAGCGAACG 192990 28 100.0 32 ............................ TATCCGATGAACGTCCGCATCCCCGCGGCTGT 192930 28 100.0 32 ............................ GGTAGACGCTGCCAGGTTAGCGGCCCGGCAGT 192870 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 192810 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 192750 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 192690 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 192630 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 192570 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 192510 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 192450 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 192389 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 192329 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 192270 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 192211 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 305013-302333 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTBA01000004.1 Pseudomonas aeruginosa strain PA-W8 IPC4_4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 305012 30 100.0 36 .............................. CACTCGGTGAGGCGCAGCGGCGCCGGAACGCCGGGT 304946 30 100.0 35 .............................. AGCGGAACCACGCCGATGCGCATCAGGTGCGCGGT 304881 30 100.0 39 .............................. ACCAAGATCCAGCAGGCGCTGGACAAGAGCGCCCAGCGT 304812 30 100.0 37 .............................. TTCGCTGCTAATATCCTGACCATCGAGCAAATCATGT 304745 30 100.0 36 .............................. AGCATGGCGCCGGCCAGTTGTCGCATGGCATCGGGT 304679 30 100.0 36 .............................. TCCTGTGCTGCCATTCTGTCGTCCACCAACTTCGGT 304613 30 100.0 36 .............................. TTCACGTTGCGGTTCCAGGCGCCGACGTGGGCGGGT 304547 30 100.0 39 .............................. ACCGCGTGCATCAACGAGCGCGACGCCGCCAACGCCCGT 304478 30 100.0 36 .............................. CGCGAAATGCTAACCCTGATGCCGGACATTGAATGT 304412 30 100.0 35 .............................. TGGTTCGCCCCGGCCCCGGTGAAGATGTAAGTGGT 304347 30 100.0 37 .............................. GTTCCAGTGGATGTCCCAGACGGTCAGTGTTGGAGGT 304280 30 100.0 36 .............................. CTTGCCGTCCAGATAGACGCGATCCGGCGAAACCGT 304214 30 100.0 36 .............................. CCCAAGACCTACAAGATCGACGTAGGGCACGACGGT 304148 30 100.0 35 .............................. CCTTTCTACCTGGAGATCAAGATGGATCAGTCAGT 304083 30 100.0 35 .............................. TCCATAGAGACGAGCCAGGCGCCCCACCCAGTTGT 304018 30 100.0 35 .............................. AGTTCTTCAGCCATTGCCGTTCTCCTTGTCCTGGT 303953 30 100.0 36 .............................. CAAGCTTTGAGCAGTGCAAGCGCCGCCCCGTCGCGT 303887 30 100.0 37 .............................. CATAAGGAAACATTAACGGTTTCCGCCAGCACCGCGT 303820 30 100.0 37 .............................. TTTTCTCTGTAATGATCGGCTATCTGCTGATGTCGGT 303753 30 100.0 35 .............................. CTTGGTCACGTCGAATATAGAGTCAGCGAGATCGT 303688 30 100.0 36 .............................. ACCATGATTGTACCAAGGAGGTACATTTATGGCCGT 303622 30 100.0 37 .............................. TGGAGCAGCCAGGTGCCGGTTTCCGGAACAGAATCGT 303555 30 100.0 35 .............................. ATGTTCTGCCGAGCGCGATAGCCGCCGCTGTGTGT 303490 30 100.0 36 .............................. AACCGCTCCACGGCTGGGGTGCGCCTGGAAATGCGT 303424 30 100.0 35 .............................. TGCGAGTTCGGGGAGCAGTCGACTAGTTGCCGCGT 303359 30 100.0 37 .............................. ACGGCGCCGCCCCTGGCGCGGACACACTCTCCGCAGT 303292 30 100.0 36 .............................. CGTGCGCGCCGTCCCGCTGCGCTGGCAGCGCCTGGT 303226 30 100.0 37 .............................. AACGCCAGTATCAGCTCGTTGAGCATATGCCCGTAGT 303159 30 100.0 39 .............................. CGACAAGCGTCAGGTCGTCGGCGTGGGTCGGCACCCAGT 303090 30 100.0 36 .............................. AGCACGTCGATGGTCGGAATGTAGGTGTAGCGCTGT 303024 30 100.0 37 .............................. ACCGTGTTCCTGAAGCTCAAGGATATCGGTGGCAAGT 302957 30 100.0 35 .............................. GGCTCCGGTCAGAAGATGTAGGTTTGTTGGCTTGT 302892 30 100.0 36 .............................. AATGGCTGATGTACGACCGACGAAGCTGCAGAACGT 302826 30 100.0 37 .............................. CTCGATGCGGCCGACCGGGTTTTCGATGGCCCATAGT 302759 30 100.0 35 .............................. TTCTCGATCGTGTAGAAACCGCGCTCCTGCAGCGT 302694 30 100.0 37 .............................. ACGCCGAATCGCTCGGATGGGTCACCGACCGCGCCGT 302627 30 100.0 36 .............................. GCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGT 302561 30 96.7 35 ............C................. AGCTCGCTGACGTCGAGGATGCGGCGGTGGAAGGT 302496 30 96.7 37 .................T............ CCCAGCGGGCGGTGGGAGGCATGAAGAAAACACCCGT 302429 30 100.0 37 .............................. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 302362 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ======================================= ================== 41 30 99.4 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTTATTGATTTATATACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : ATAGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGTCGAAAGAAAGACTAGGTTGCGCTGCTCGTCGCACATGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGGGCGGTGAAGCCCCTCGGGGTGTGGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTCAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCTTGCTCCAAGGTCAGCGACAGTTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //