Array 1 1398227-1397587 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084740.1 Dickeya zeae strain A586-S18-A17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1398226 29 100.0 33 ............................. TAGATCATTCGCGTCGGCATCAACGAGAATCGG 1398164 29 100.0 32 ............................. AATCAGCGTCCCGCAATGGGCTGATGATTTTC 1398103 29 100.0 32 ............................. GGAATGCTTCCTGATTAGGAGAATAAAAAATA 1398042 29 100.0 32 ............................. GGCCTGAGGATTTTTACCCCGTTCAAACTGTC 1397981 29 100.0 32 ............................. GGCGTGTAGACGCTGCAATGACAACATTGGCG 1397920 29 100.0 32 ............................. ATACGGGTCTATAAATTGCTAGAGATGCTAGC 1397859 29 100.0 32 ............................. CAGGCTGTAGACTTAACCTCCGCCGAGGGGGA 1397798 29 100.0 32 ............................. TCAGCATATGCAGATAAAGATGGTAAACCGGT 1397737 29 100.0 32 ............................. ATTTTAGCTATTGCTGCGTTAGGGTTTTTACC 1397676 29 100.0 32 ............................. AGTCTGATTTCCATTTTTCGACGATTTGGATA 1397615 29 86.2 0 ............T............G.GT | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAACGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTATTGCACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCATTTCAGCGCCGTCGAGCGATCGCCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACATCGGTGGTAATGCCGGTATAAAGCCACCCGCTGCCGGTGCGCAGCAGATACACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGACTGTTTGACGGCATTCATCGGTGGACGTGGGTGAGGAAAATTGCGACCTTTATTTATCAATAAGTTAGCGCTCTTTAACAACGTGAAAAAGTCGGTGGAATTTTTCAGGCTTTAAAAGTTATTAGAAAACAAGTATATACTTTTAGA # Right flank : TGCCGTGATAGCACGGCACAATCCGTCGCGATACCCTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTGTAATTTCTTTTTTATGTAAATAAAACCACAAAAAGGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGATGACGACACCGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCTGCTATCTGTATCTACCCGCGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGCACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACATGGCAACGATGACATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTACGGTGCCGACGATGTCGACGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1687624-1687229 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084740.1 Dickeya zeae strain A586-S18-A17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1687623 29 100.0 32 ............................. ATAGAAGGGAACCCGTGGGGGCCAGCAATAAC 1687562 29 100.0 32 ............................. GAAGAGGATAATCGAATTGTTATCTATTATCT 1687501 29 100.0 32 ............................. CGGGTCACGCTGACGCGGTTGCCATCACCAGA 1687440 29 100.0 32 ............................. GCGATTGACGACGAAAGGGCGCGACTGGCATC 1687379 29 100.0 32 ............................. TTTGGGATAACGGAGAATTTACGTGCATGAGA 1687318 29 100.0 32 ............................. TCAGCTATAAAATAATTTTTAGTGCACCTTAT 1687257 29 89.7 0 ................T.........T.A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTACTGGCCGCCGGTGAGATTGAGCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGGCACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTTTGGCTGCTGGAGGTACGCGCTGGCGTCTATGTGGGTGATACCTCGCGCCGGGTACGGGAGATGCTCTGGCAGCAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGCGAAAACCGCCGGATGCCGGTGGATCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCTGTTGAAAATCAGTAAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTGGAATTTTACGGCCTTAAAAATACCTTATAAAACAGGTATATACTTTTAGA # Right flank : GAAACAAATCGGGCACGCGGTGTGATTACGCGTGCCCGATGTGGGTGGCCGTCAGACAGGGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGATGTTTTAGCGGCGGCGGGTTTTTTGAGCGCTAGCGTCTTCGCTGCCGGTGCCGATGAAGGCGAAATCATCGGTCGGTTACCCGCCAGGTTGTAAGACCCACCCCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCGGCCTGCTGTTGCAGGGATTGCGTGGCATTGTAACCCTCTCTGACCAGCGAGGCATTTTGCAGCGTGGTTTGTTCCATTTTATTAATCGCCTGGTTGACCTGCTCGATACCCAGTGACTGTTCCTGACTGGCGACGCTGATCTCACCAACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGTCGGTTCCCGGCATCCACCGTTTCGACTGAATGGCCGATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2997880-2997379 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084740.1 Dickeya zeae strain A586-S18-A17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2997879 28 89.3 32 T..........GA............... TGCTGCGAAACGCTGGTGGCTGGTTCCTGGCC GA,T [2997872,2997875] 2997816 28 92.9 32 ...........GA............... AGCAGCGAACACCTTGGTTTCGGTGTAAGTCG 2997756 28 100.0 32 ............................ TCGCCGTGGCGATGGGGCTGTAATCATGAACT 2997696 28 92.9 32 ...........TA............... GGCACAAATTAGATTTGGAACGCTCTCCACCT 2997636 28 92.9 32 ...........GA............... TACATCATGCACATCGCGCAGTCATATGACGG 2997576 28 100.0 32 ............................ TATCAATAACACGTGCGACACGTGCGCTAAAA 2997516 28 100.0 22 ............................ AGACTGATAACATCTGTGGCCG Deletion [2997467] 2997466 28 100.0 32 ............................ GCTACGAAAACTGGTCCTGATCAAACTCGCAG 2997406 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.0 31 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ACAGCGCGTCGCTGCTGCTTTCGCTGCTGTACAATAAGTTCTTGCTTTCACTTTTTTACGCCCTTTCCCCCAGCCGGTAACGGTTGGGGGATTTTTTTCCTTGCAGGAAACGGCTATGCCCGCCGGGGATGGGGTGCTGGTAACAGCCGGGGGATTGCGGCCTGATTTATGCTGGGGCGGTGGGTGGTTTCGTGCGGGATAAACCGAGTCGCTTCTTTGCCACATCATCGCACGCACGACAAGGAGAGGTGCAAGCGCCACCTCTCCTTGACCTCTGGCTTGATGGCTAAACTACGCCGCTGACGCGGTGCCTTCGGCGTTCGCCTTCGCTGTTCGGACCGCCTGTGACGTGCTCCATGCACGGCACAGGCTTTCGCGGCGTCCTGCCGCTCATCCGGCGAAGTCGCCCACCTCAGCGTAGTTTTCACGCCAGCAACCCCGTCAACCTCTGCCTGTACGGCAGTGAACTCGGCCTGAACAGCCGGTACCTGCTGCGCCAT # Right flank : ACAGTTCTGGCGATTAAGGGGATTAAATTAGATTTTCACTGCCGTACAAGCGGTGGTTGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACATCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGCACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTTCACCACACTCCCCTATACACTACGCCCTTAATCCAACAGCGCTTTCCCCGCTTCGGGGATATCCTGTCAGAACGACGTCCAATCACTATTGCTACCCGCTGCCGCCGCGGCCCGTTTTTCC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3003559-3002990 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084740.1 Dickeya zeae strain A586-S18-A17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3003558 28 92.9 32 ...........CA............... TGGGAATCTCCGCTCAGCTCCGAATTCGACAG 3003498 28 92.9 32 ...........CA............... AGAGAATGCCGCCCGGAGCACGGTCAGTCAGG 3003438 28 100.0 32 ............................ TGGATTTGATTTGATAAACTCAGCAACGCGCT 3003378 28 100.0 32 ............................ TTATCAAACTCACGGTTATTACTCACTCAACA 3003318 28 92.9 32 ..TC........................ CACCAGCCTTTGCGCTGCAAAACAGGCTCCAG 3003258 28 100.0 32 ............................ TACCTCTCTCCTCGCCATGCAGCGGTGTTTTC 3003198 28 92.9 32 ...........CA............... TGACTGTTGTCGATGCCGAGCCTAAAGCGGCC 3003138 28 96.4 32 ...........C................ GCTCAAGCACTGGCCGCGTGTATTGCCCCGTC 3003078 28 96.4 32 ...........C................ AAATGAGTGGCCCCACAGTTCGTTAATCCAAT 3003018 27 75.0 0 ...........CAC......A..-..CG | GG [3002995] ========== ====== ====== ====== ============================ ================================ ================== 10 28 93.9 32 GTGAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GGAAATCCCGCCCATGGCGATATCGCACTGGTCGGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCATTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCACGCAGCGAGGTATACGGCTTATAGTCCCCGGTAGTACAGACCTTCAGCACCCCACGTTCCTGAACCTGATCAAGATGAGAAGCAGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATGAGAACCGTTTTTTCATGAAATATCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACGAATATCGCTTTTGACCCTTTTTTTTCGCCCCGTGATAACTCGTTGATTTTTAATGATGATAAAGGTGGGTTTTAAAAAAGGGTTTCACGACCAAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACTCAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACCGTTTATCCCGCACGAAACCACCCACCAACCTGACATACATTCGCCAGTCAATAACAAAGCACCCAAGCTGTTTACCAACAGCCCAAAAACGCTATTCCACCGTCAACACCGCCACCGCCTTTTTACGCTGTTTGATGGCATAACCTGCCCCCAGCGCCAACAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAAAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCAGCGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //