Array 1 5988-6975 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCNY010000024.1 Klebsiella oxytoca strain CVUAS 11572 NODE_24_length_77706_cov_4.55607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5988 28 100.0 32 ............................ CGTTGCAGGTGGTTTTATCCCGCTACGAGCTG 6048 28 100.0 32 ............................ ACCAGCGCCAGCACATCGTTATCACCGATATC 6108 28 100.0 32 ............................ TTAACGGCATCGATACACCGTACATTGACCAG 6168 28 100.0 32 ............................ TGTTTGACGGCTGCGTGCAACTGAAAACCAAC 6228 28 100.0 32 ............................ ATGCAGCGAAAGCGGAAATGCGGTTACGGAAT 6288 28 100.0 32 ............................ ATAAAATGCCGCTGAGAAATCTGTGACACCAG 6348 28 100.0 32 ............................ GGAAAATAATACTCCATCATCTGAAGAAGTGG 6408 28 100.0 32 ............................ ACGAAAAAGATTTCCGCCGAAAAAGTGGAAAG 6468 28 96.4 32 ......................C..... CTTAAGCCAGGCTGGCTGAACGTTTTTGCTGA 6528 28 100.0 32 ............................ TGGGCGAAATTGCAAACCTGGTTGGGTTATCA 6588 28 100.0 32 ............................ ACAATATTGCGTCCGGTCTCGAAAATCCTTTC 6648 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 6708 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 6768 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 6828 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 6888 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 6948 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGATAAAGAGAAAAATGCGCTGACCTACGCCTTCCAGAGCGCGCAAAAGCACAAACCGGAAGCGGCGCATTAAGTCGCTTACGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAATGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15405-15912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCNY010000024.1 Klebsiella oxytoca strain CVUAS 11572 NODE_24_length_77706_cov_4.55607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15405 28 100.0 32 ............................ TCCACAACGTCACGCGTCGGAATAACCCAGCC 15465 28 100.0 32 ............................ AGTGACCTGGGGCGCGGTGGTGATATTCAGCG 15525 28 100.0 32 ............................ TGAAGAATGTCAGTTCCTGGACGGATTCATCG 15585 28 100.0 32 ............................ AGCAGCGCAGGGCCAACGTCCTCAGCGAGAAA 15645 28 100.0 32 ............................ AGACTGGCCGTGGTATCACTCAGGGCGTTATT 15705 28 100.0 32 ............................ TAAATCCCCCGCAGAACGCAAAGCCGCGCAGG 15765 28 100.0 32 ............................ GATCGCATCGTAGCCGGGATTAAGGCTGATGG 15825 28 100.0 32 ............................ GTATTAAGGAGCAGGAATGAAAACGCCAGATA 15885 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTTGTCGAGTGCTAAAACAAACTATAACCGGCGCGGTTTTTCGCGCCGATTTTTCAAGCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTATATAGTGATTTTATAAAGGTCGGAAAAAGGGTTATGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGTTGGTTGTAGTGGTTAGGCAGCA # Right flank : ATCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAACGGCGGGAGAATAAAAGAAATGAAAAGACCGGGAGTTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7478-7270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCNY010000045.1 Klebsiella oxytoca strain CVUAS 11572 NODE_45_length_44097_cov_4.40894, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7477 28 100.0 32 ............................ ATCCCCACGGAGGCCAGCGCCTCCCGGCTGTT 7417 28 100.0 32 ............................ CATCATGGCATCCCAGGCGCCGCTGGCAGCAT 7357 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 7297 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTACTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGGATTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTTTGGGGAGGGTATTTTAAGATCTTGATTTTTTAATATTTTTATTGTTGTCACAAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACACTAAGGCAGGTGCGCCGGGCTAGT # Right flank : GAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACGAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAGC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //