Array 1 1571-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGI01000001.1 Moraxella catarrhalis strain COPD_M139 NODE_1_length_286068_cov_27.1484, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1570 28 100.0 32 ............................ ATCAAGGGGTTTTGGGCGGTGTATGATTTGAT 1510 28 100.0 32 ............................ TTTCCACGCTCAACGACATAAGTCGAATAAAC 1450 28 100.0 32 ............................ TAGCCCTTGCGATACAAAGAAAAAGAGAATAA 1390 28 100.0 32 ............................ ATCAATGAGCCAAAGAAAATCAACATCGCTGA 1330 28 100.0 32 ............................ ATCTCCGCCCATGGTGATGACCTCACTTTTTT 1270 28 100.0 32 ............................ ATTGGGCAGTAAGATACCACAGATAACATAAG 1210 28 100.0 33 ............................ ATGCGAATAAGCGGCGATAAGTCAGCTTCGCAC 1149 28 100.0 32 ............................ TAAACCCAATACGAAAAGATGCCAAATTTTAT 1089 28 100.0 32 ............................ GCCTGCATAGCTTAGGCGAGCTAGTGTACGGT 1029 28 100.0 32 ............................ TAATTGCTCCCCTAAGATTACCGAACAACGAA 969 28 100.0 33 ............................ AGTCCATTGTTGAATTTTTGGTACATACTCGCG 908 28 100.0 32 ............................ GTAAAAAGTCGGTAGGTAGGGCGAGTGGTGAC 848 28 100.0 32 ............................ AGTTAAAAAAATAAGCAGTTTTAAGACTTGCT 788 28 100.0 32 ............................ TATATAGCGATACAGCAGATTTTATTGCGATT 728 28 100.0 32 ............................ AAAACCTTGACACGGTCAGGATTTAGCACATA 668 28 100.0 32 ............................ AAGTTTTCAGCGATTGAGCCGAATGTCCGCCG 608 28 100.0 32 ............................ TTTAGATGATGATGACTTTGTCAAAGAAGTGC 548 28 100.0 32 ............................ AAGATGGTAAGATTATTAGTCTAACCAATCAA 488 28 100.0 32 ............................ GCCCTCAAAACTGGTTTGCAGTAGCTGATGTG 428 28 100.0 32 ............................ AAAAGGCGGCCAATACTTTGATGCAGGAAACA 368 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 308 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 248 28 100.0 32 ............................ AAGCAAGACAAAACATTTGCTTTAGGTGAGTT 188 28 100.0 33 ............................ GGCTTTTTAAAGAATTAAACCGTTGGACGATCA 127 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 67 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : AATATGGATATAAAGATAAGTATTCTGATAAGTCTTCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 61557-61409 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGI01000011.1 Moraxella catarrhalis strain COPD_M139 NODE_11_length_61595_cov_26.7283, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61556 28 100.0 32 ............................ GCCCTCAAAACTGGTTTGCAGTAGCTGATGTG 61496 28 100.0 32 ............................ CCGGTTTGGGATTGCGAAAATGGATAGATGTT 61436 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TTAGAAAACTTGATTTAGTAGCTAAGCTTGATGTGTCA # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 40-844 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGI01000033.1 Moraxella catarrhalis strain COPD_M139 NODE_33_length_844_cov_49.2273, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 40 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 100 28 100.0 27 ............................ GAAGATCAGATCTATTATTGAGCGAGC 155 28 100.0 32 ............................ AAACTTCGGTCGATTTTGACACGGTTGAACGC 215 28 100.0 32 ............................ GTGATGATGTTGAAAAATATGGCAAGTTATTT 275 28 100.0 32 ............................ TTATGACACGCTTGGCACTGATTTTAGTGATA 335 28 100.0 34 ............................ CTGCGAAACTCGGTCATTCGCAAGTTTTGCAAAC 397 28 100.0 32 ............................ AAACTGCCAGAGGTGTGCACTGGCAAGCCTTT 457 28 100.0 32 ............................ ATGACGATGCTAACAGAAGAACAAGCAGATTT 517 28 100.0 32 ............................ TCCAAAAACTCACACAGATAAAACGTGATTAA 577 28 100.0 32 ............................ TTAGCAAGTCTTAAAACTGCTTATTTTTTTAA 637 28 100.0 32 ............................ AACTGCTTATGGCTGGATTATACCAGTACCAC 697 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 757 28 100.0 32 ............................ GCCCTCAAAACTGGTTTGCAGTAGCTGATGTG 817 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 14 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TTAGAAAAGGTGGGAAACAAAACAGGGCTTTGTGCAGTAC # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 40-187 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGI01000049.1 Moraxella catarrhalis strain COPD_M139 NODE_49_length_226_cov_23.2727, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 100 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 160 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TTAGAAAAGGTGGGAAACAAAACAGGGCTTTGTGCAGTAC # Right flank : ATATGGATATAAAGATAAGTATTCTGATAAGTCTTCACG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //