Array 1 4585032-4591386 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064001.1 Xanthomonas translucens pv. translucens strain XtKm34 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4585032 31 100.0 34 ............................... CAATGCTTTGGTCAATGCGATCTTGATGGCTATC 4585097 31 100.0 35 ............................... ATCACGATGGATGACATTGTGACTGACTGGAATAT 4585163 31 100.0 36 ............................... ATGCCCAACTCGAGATTCGCGAACTTCGCGAGGAAG 4585230 31 100.0 37 ............................... TTCGACATCCACGACATGGACAGCAACGAGGTAGAAC 4585298 31 100.0 33 ............................... TCGCCCAGGATGGTGACCATGTTCTTGACGAAG 4585362 31 100.0 34 ............................... CTCCGATTGTGTCGCTCTCCGCGGCCAGTACCCG 4585427 31 100.0 34 ............................... TGATTCTGGCACCGACAATACGTATCGCCGACAA 4585492 31 100.0 35 ............................... GTGAGTGACGCCTCGTTCAAGGCGCTGTCCTCGCA 4585558 31 100.0 36 ............................... CACAAATCAGCACTGATCTTCGGCGGCGATGTAAAG 4585625 31 100.0 35 ............................... TTACCACCATCCCCGGACTTCACCGCCTCGTACTG 4585691 31 100.0 33 ............................... TGACATCCTGAATCTCCTATGCAGATAACGCGA 4585755 31 100.0 36 ............................... CCTCTGTCCGTCATCGGAATTCCTCGTTGTGTAGAT 4585822 31 100.0 35 ............................... CGTGGCCGCAATCTGCTGCTGCAGCGTGTTGACCT 4585888 31 100.0 34 ............................... GTCTACGGCGACACCGCTCCGGCTGCTGCCGGTG 4585953 31 100.0 35 ............................... TTCACCGACCACGAGGGTTCGTTGGTCTGCGCCCG 4586019 31 100.0 35 ............................... GGCGTATCCAGTTTTTCTTTGGTCGCCACCCACTG 4586085 31 100.0 35 ............................... CGGCCATGGCCTTGTCAAACGGCAGCAGCTGCGCG 4586151 31 100.0 36 ............................... ACCGCTTCGGAGTACGCGGGGCGAAGCGAGCTAACT 4586218 31 100.0 36 ............................... CGCTAGTTAGGGCTGGGTTCCTAAGCGACCCGGCGA 4586285 31 100.0 37 ............................... ATGCCCGTACCACGCTAATTAGCACACCATCTCTCAA 4586353 31 100.0 35 ............................... ATAACTTCAATGTTGCCCAACCGAAGAACGACATG 4586419 31 100.0 37 ............................... GGCGCGGTAGTGCGCGCCCAGGTAGGACACGGATTTG 4586487 31 100.0 35 ............................... GGGGTTCAGCGACATCAAGCTTACAGCGTTGAAAA 4586553 31 100.0 34 ............................... CGAAATAAATATCCCTACCTGTAACCCAACGCTG 4586618 31 100.0 34 ............................... GGCTTACTGGGGTCAGGCACCTTGAATTTCTTTG 4586683 31 100.0 35 ............................... CTGTAGCATAGTGTGTCGGGTCCAACTCTATGCCA 4586749 31 100.0 35 ............................... GTGTCCCGCCGTCGATGGTCGGCCACGACGGTAAA 4586815 31 100.0 35 ............................... TTCTGCCGACTTGCCCCGTGGAACCAGTGACAAGG 4586881 31 100.0 35 ............................... CGGTTACGTCGATCAACTCCCCGTCCTCCAACATG 4586947 31 100.0 34 ............................... GTAGTAGTCGTTTGCGGATATGCTCCGCGCGCGG 4587012 31 100.0 35 ............................... CAGCATGAACCGGGCGATGAGGGAGATCGCCTCGC 4587078 31 100.0 35 ............................... TTTTACAACCCGAGCGGATCTGTAGGCCATATGCG 4587144 31 100.0 33 ............................... TTGGACGAGATCGCCGAGTTTCCCAACGCAAAG 4587208 31 100.0 35 ............................... CCGTACGCGGCCGACGAAGAGGCATGGGAGCCGCG 4587274 31 100.0 34 ............................... CTCTCGCTTGCGATGTTCTGGCTGCTGCTGCCAA 4587339 31 100.0 35 ............................... ACGTCGTGCCAGACATCCGGATCGTGGCTGCCGGG 4587405 31 100.0 36 ............................... TTAATCCGCGCGCCAACCAGTGCCACCACACCAAAC 4587472 31 100.0 36 ............................... GTGTGGAAACAGCAGCCTACCGCAAGGAGGGCGACG 4587539 31 100.0 36 ............................... GAACTGGCGACCGCCGCGGACCTCAACGGCGAGCAG 4587606 31 100.0 34 ............................... CTCCTCCGTTCCCTTCGGGTTGTATCCTTCCAGG 4587671 31 100.0 34 ............................... TGGCCCACCGCAGCAGACACCGATTGGATGTTCT 4587736 31 100.0 34 ............................... AGATTGTCCTCCAACACGCTGAGGCATTCGCGGC 4587801 31 100.0 34 ............................... GGGTGCGGGCTTCGGCGGTTTGGCGGGCGGCGGC 4587866 31 100.0 35 ............................... AGTTTCCACCCTTGGCTAACCGAGACGATCCTCTC 4587932 31 100.0 34 ............................... AGCTACTGCCGCCTGCAGCTGCGCCATGCCCGAC 4587997 31 100.0 36 ............................... CTCCTCCTTCCCTGAGTGGTGTGAGCGTTTTCTACA 4588064 31 100.0 34 ............................... AAGTACCTCTGTGCGCTCGACAACCATTGCAAAC 4588129 31 100.0 34 ............................... CTGGAAGTGCTGGAAGCGCGCACCGACCGCCTGG 4588194 31 100.0 36 ............................... ATCATTGCTGTCTACGGTGGCGTACTCAACACGTTC 4588261 31 100.0 34 ............................... GAGGTAACCGGCCCGTACGATAAGGCGCGGATTT 4588326 31 100.0 35 ............................... CCAGCGTGCCGCGGGAGGGCCTAGAGGAGACCACG 4588392 31 100.0 34 ............................... CGCCGCAACAAGGCGCCCCCCTGCTTCTCTGTAC 4588457 31 100.0 35 ............................... AATTAGACTTTCGAAATCCGCGATCTGCGAATCCA 4588523 31 100.0 35 ............................... GCAGAACGGACGTAGCATGTGCGAAACAACCCACG 4588589 31 100.0 35 ............................... GCGAAACATTGCGCTGGTGTTAGCACGCTTGCCGG 4588655 31 100.0 34 ............................... CTCCAAGCGCTGGCGAGGCGTGCCGACATCCATA 4588720 31 100.0 34 ............................... CCTACCACGCTGCCCAACGACAGCGCAGAGCGCA 4588785 31 100.0 35 ............................... TGGTCCTTCATCCCGTCGATGACCTGGCCCAGGTT 4588851 31 100.0 33 ............................... TGCCGCGAGCGAGCCGATCGACGCCCTTATAGC 4588915 31 100.0 35 ............................... TGCCCGAAGGTGACGCGCGAATCGTATGCGCCGAT 4588981 31 100.0 36 ............................... ACCGCAGCGCCGGCATTGGTGACCGGTGATGCGGCC 4589048 31 100.0 36 ............................... GCGTAGTGGTCTCCGCCCGCAGGCGAAGGTCGCCGG 4589115 31 100.0 35 ............................... CAGCGCGTCCCTGCCCAGCGCTGAGGACTTTACGG 4589181 31 100.0 34 ............................... AGGGGTGCGAAGCTCCTGCACCTTGATCGGGGTG 4589246 31 96.8 34 ..............................A ATAAATATGTTGGGAGTGTCTCTTGACGCGGTTG 4589311 31 100.0 35 ............................... GCCAATGGCCTGCAGGTCGCCACCCGCATGTTTGG 4589377 31 100.0 35 ............................... ACCAAGGTGGAAACTGTTGATATGGACGCCTTCGT 4589443 31 100.0 37 ............................... TTGTCCTTAAGCAGCAGGTGCGCACGGCAGTAATCAC 4589511 31 100.0 35 ............................... CGTGAAAAAGCTCTACATTGCGCACGGTGACAATA 4589577 31 100.0 34 ............................... ACTAAGACGGTGAGCGTGATGGACCTGCGCACCA 4589642 31 100.0 36 ............................... GACTTAGCGAACTTCATGGCCTGGGTAGCCTTCGTC 4589709 31 100.0 35 ............................... TCGGTGTTCAACGGCCGTCGCAACCTCGCTGAGGA 4589775 31 100.0 35 ............................... ATCGCGTCCAACGGCACGCCGAACACTTCGACGCG 4589841 31 100.0 35 ............................... TGGTCCTGCCTGTTGGCGATCGTCATCTGCTGGGC 4589907 31 100.0 35 ............................... CATGAGGACCCGAGAAGTAGCGCCTACTGCCACCG 4589973 31 100.0 33 ............................... TTCATGGGTTTCCCTCTGTGGGTTTCGTGGGCG 4590037 31 100.0 34 ............................... CTGATTCGCCCGAAGCTTACCCTTACCACTCACG 4590102 31 100.0 33 ............................... TCGCTCGGCTTGGGTCCGCTGGCACTGGCCGTC 4590166 31 100.0 37 ............................... TTGAGCCCCACGATCGCCTCGGCGGTGCGTGTGAAAG 4590234 31 100.0 35 ............................... TCCGGCGAGGACGCCGACGGCCTCGGCGACCGGGG 4590300 31 96.8 35 ..............................A TTGAGCCCGACCGCCTGCGCGGGGATTCTGCGCCG 4590366 31 100.0 34 ............................... TCATCAAGCTGGCGGCAGAACTCGTTGTCGAAAT 4590431 31 96.8 35 ..........T.................... CGCTGCCCGGTCGCCCTTAGCGCCGCCGTGTGGAG 4590497 31 100.0 35 ............................... GTGGCCGCGCGGATGCCAGCCGCGAGCGGGTACAT 4590563 31 100.0 35 ............................... AAATCTAGTTCACGCCGATGTGCCGGCGCTGCTGC 4590629 31 100.0 34 ............................... AAAATCCCGCAGTTCGAACTGATTTACAGAAAGC 4590694 31 100.0 35 ............................... CTGCTTGCTGAGCAGCTGCTCCCGGCCACGGTACC 4590760 31 100.0 35 ............................... ATTGCTTTACGCTATCGGCGCGCACAGCACGCGAG 4590826 31 100.0 35 ............................... CCACCGGCCAAGGCTGGAAGTCCGTATTTGGCACG 4590892 31 100.0 36 ............................... TTGAGTTTCAGCTCTGCATCGACGGCCCGGATGCGG 4590959 31 93.5 36 ....................CA......... CGCACGTTCGACGGCCCCAGGTGGAGGAACGCCCCG 4591026 31 100.0 34 ............................... CAGTTCTCGTGCCCGGCACCGCCAGGCTTCTTGC 4591091 31 100.0 34 ............................... TGGAACAGCGAGAAGCACCACACTCGCATGAGGC 4591156 31 96.8 34 ............G.................. AACCGTAGGTTGACTGGTTGGCCTGCCAAATAAA 4591221 31 100.0 36 ............................... AGGAGGCGCTGTCGTCCACGATCCGCACCGCCAAGA 4591288 31 87.1 33 ..............AT....C..G....... ATGTATTTGTTCGAAGAACATGTTCTTGCCGGT 4591352 31 93.5 0 ...............C.........G..... | T,G,G,C [4591356,4591360,4591362,4591380] ========== ====== ====== ====== =============================== ===================================== ================== 97 31 99.6 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAACCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAAACAAGTCATTGATTTACAAGAAAAAAACCAACCTCTTCCGCTCACTACAGGTCCGCGGCAGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : CTGGCTTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACCGTTCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGTTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACAGCGGTGTTGGTGGAGGAACCCTCGGTCTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAACGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //