Array 1 166036-164008 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCAE01000029.1 Neisseria meningitidis strain Nm288 Nm288_scaffold_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 166035 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 165969 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 165903 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 165837 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 165771 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 165705 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 165627 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 165561 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 165495 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 165429 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 165363 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 165297 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 165231 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 165165 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 165099 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 165033 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 164967 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 164901 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 164835 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 164769 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 164703 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 164637 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 164571 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 164505 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 164439 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 164373 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 164307 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 164241 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 164175 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 164109 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 164043 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 31 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //