Array 1 568841-571339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPJ010000001.1 Tissierella pigra strain MSJ-22 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 568841 30 100.0 38 .............................. CCAAACACAATTCGGATTAAATCTAAGCTATCTCCTAG 568909 30 100.0 37 .............................. CCTCCTTAGCTTTTTCTATAGCTTCATTTGCTGTACA 568976 30 100.0 36 .............................. GCTTTTATAACTGTTTCATGTTTTCCTTCTATCTCA 569042 30 100.0 37 .............................. CTAAGTCTAAATAAACAATACATTTTCTTGTATTCGT 569109 30 100.0 37 .............................. GCATTAATTAAAAGTGCAATAAGTCCAGCCGAATTTA 569176 30 100.0 37 .............................. GAATATTAGAGGGTGAAGTAAATGGCTTATAATACTA 569243 30 100.0 37 .............................. ATATCTTGGAGGAAGGATTGTTTTTAACTCCTCTTTC 569310 30 100.0 39 .............................. ACACCTTTAGAAGTGGATTATCTTCTTTTTTAACTTCTT 569379 30 100.0 37 .............................. TATGGATAAAACTACTAACTATGGCCGGGAAATGTAA 569446 30 100.0 37 .............................. ATACTCTAGATTGTTTACATCATGATGATAAGCTAAC 569513 30 100.0 39 .............................. TTTGAAGCCAACTTCCTCACCTCCCATGAATGTGTTCTG 569582 30 100.0 36 .............................. CTATTCATATCTTTGTCCTCCTTCATATCAATAAAA 569648 30 100.0 38 .............................. TTTCTTCATCTTCCGAATCTATAAATGTATAGAATCTT 569716 30 100.0 35 .............................. CTTGGATTGGAATGATTTCCTCTTGTGCTAATTGA 569781 30 100.0 37 .............................. ATGGATGAGGAAAAGATAGGCAAATTAATAAGTGAAC 569848 30 100.0 35 .............................. CAAAAAGTAGTAATGATGATTTGAATATCTATATA 569913 30 100.0 36 .............................. ACATGACACAAGCAACCTTAGCAGAATATGCAAGGC 569979 30 100.0 37 .............................. CTGATTCAGCTAATGAATCTCTAAACTTATCAACTGG 570046 30 100.0 36 .............................. TATAACGTTAAAGGGTGATAATATGGCAAGACCGAG 570112 30 100.0 36 .............................. GAGTGTACCTTTGAACCCTTAGGTAAATCTATTAAC 570178 30 100.0 37 .............................. GGCAATCTATCACCTTCTTTACATCAAGGGGGATTTC 570245 30 100.0 37 .............................. TTGAAAATCATACTTTTGATTTAGCTCAAGAATATCT 570312 30 100.0 34 .............................. TCTAGTATTTCATTATTAATTTTTAATTTCACTT 570376 30 100.0 37 .............................. TTTCTAATATCTCCTAATAAAATAAGATTTCTATTGT 570443 30 100.0 36 .............................. GACATAACAGAGGCTAGGAAATATTACGTAGGTAAC 570509 30 100.0 35 .............................. TCTTTTTGAATGTAAACACCAATACCTACTACTTC 570574 30 100.0 39 .............................. GTGGTAAATATCTTCACTCCAATATCCTCCTCACTAAAC 570643 30 100.0 38 .............................. TAATGAGTACCTTTATCTACTTCTATAGATATTATATT 570711 30 100.0 37 .............................. TTGCATAGTACAATATAAATACAAAGATTGCATAACG 570778 30 100.0 37 .............................. CTGAAAATGTTGATTTGCATTTGCCTTTTCCCATATC 570845 30 100.0 38 .............................. ATACAATATTTTGATGTGGCTAGTGAGAATATGAATCC 570913 30 100.0 36 .............................. CTAGATATGTGGGAAAATAAAGGGGTGTAATATTAT 570979 30 100.0 36 .............................. TAGTAGGGCTGTTTCATGATATAGGAAAGGCAGCAT 571045 30 100.0 36 .............................. AAAATAGAATTTAAGACGTTGGTCGCATTTTGCACC 571111 30 100.0 35 .............................. TCTAAACAAACACCTATTCCATTTAACGGACAAAA 571176 30 100.0 38 .............................. CTGAACCGAATCCAATTTTCCCATCTTCGAGTTCCTTC 571244 30 100.0 37 .............................. CAATAAGATACGCTACATTTTGAGGTTTTCTTCTTTT 571311 29 86.7 0 .....................-..G..T.G | ========== ====== ====== ====== ============================== ======================================= ================== 38 30 99.6 37 GTACATAGATTACCTATAAGGAATTGAAAC # Left flank : AGCTATAAACGGCTTACAAGACTAGAATTATATAAAATTCAAAAACATATTACTGAAAACAAGCCATACGAAGGACTTGTAGCGAGATGGTAGAATGTTTATGATATTATTTTATGATTTTGGAGAAAAAAGAGTAGGTGAGGCTTTAAAGGCTTGTAGGAAATATTTAACATGGGTTCAAAATTCTGTGTTTGAAGGTGAAATTACAGAAGGTAATTTAAGGAAGTTAAAGTATGAGCTTGCATCTAAAATGAATAAGGAAGAAGATTCATTGATAATATACACCTTTACAAATATGAAATACTCTAATAGAGAAGTAATAGGTATAGAAAAAATCCCCAATCAATATTTCTTTAAAAATTCGTCGAACCTTAATGGTGTAGAAAACTATAGGGGTCGACGAAAATAAGAATGACTTAATAAGTTAATTTCACGAAAAGATATAAAAGAGCAATAGAATATGATAAAATATAAATGTAGCAGTAGTGCTATGTGTACGG # Right flank : GGTTACACTAGATAGGACAGTTTTTCTCCGAACATGATATAATAAAACTAGGAGGAGAAAATCATGTCAAGAAAATATTATGAGGAAAATTTCAAGAAGCAATTAGTTAACATATATAACCAAGGTAACCATACCTATAGGGATCTACATGAGCAATATGGGGTCTCTCCATCTACTCTAAGACAATGGGTAGTGAGGTACAATAAAACTGAATCCTTCAATGCTAAAGATAATATGACGGACCAGGAGAAGGAATTAATTGAACTAAGAAAAAGAAATAAACAACTTGAGATGGAGAATGATATTTTAAAGCAGGCAGCACTACTACTAGGCAAAAAGTAGACCTGATTATTTCTAATAGAGGGAAATATAGTATTAGTGCTATGTGTAAGCTTTTAAAGGTCTCAAGAAGCCTAGTATATTATCATCTAAATAATAGGGAAGCTAGTTCTTCTAACAAAGATTCGGAGATAGAGAAACATATAATGAAAATTTTCCAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACATAGATTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 572646-573536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPJ010000001.1 Tissierella pigra strain MSJ-22 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 572646 30 100.0 36 .............................. TAAAACTGCTTAAAATCCAAGGCTATTCACCTCCTA 572712 30 100.0 37 .............................. AAAAATGATGCCGAAACTTTATCATCTTTTATAACTA 572779 30 100.0 38 .............................. AGGATGTCTATATACTTAGTAATTCTTTTTTCTTTTCA 572847 30 100.0 35 .............................. CCCAAAGTGTTGATAGTAAGAACCAATAGGAATAA 572912 30 100.0 36 .............................. CCTAGTAACTGAAGCAGAAGCTACTTTCGGTGATGG 572978 30 100.0 35 .............................. TCAGATTAGTGAAGTAGATATAATTGCTATATATA 573043 30 100.0 36 .............................. GAAATAGTTTATGATGATATTCCTCCTGAACCACCA 573109 30 100.0 37 .............................. TCTTCTTCTAAAGACCAATTCTTTCCTCTAGCCATCT 573176 30 100.0 38 .............................. CTATTTTATTGTCTTTTTTGGCAACTATATAGGCATTA 573244 30 100.0 36 .............................. GATGTATATCTATTCATTCCTAATATTGTAAGTACC 573310 30 100.0 34 .............................. ATAACCTACGACAATTAGGTCAAATCCTAAATCT 573374 30 100.0 36 .............................. GCTTTTCTCTGCTCTTCAAATTTTTCTTCTAGTCCT 573440 30 100.0 37 .............................. ATTTATTATTAAAATTAGAAGAATTAAGAGAAAGAAC 573507 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 100.0 36 GTACATAGATTACCTATAAGGAATTGAAAC # Left flank : GCTATTCAGCTGGTCCCAATAAAGATGCTTCTCTTATAGAAAAAGCACTTTTAAGCTGCCGTTATCCTTTAAAAGATATAAAGATATTTCATTCAGACCGTGGTAAGGAATATGATAATATAAAAATAGATAATATCCTAGAAGCCTTTAACATAGAACGTTCTCTAAGTAGGAAGGGGAATCCCTATGACAATGCTGTAAGTGAAGCTACCAATAAAATCCTAAAAGTAGAGTTTATATATCAAAATAGATTTGAAAGTCTGGAAGTGCTTAAATTAGAGCTTGCAGAATATATTTACTGGTATAATCACATAAGAATTCATGGATCTTTAGGATACATATCACCAATTGAATATAGAAATAGAGCTAGCTTTGATTTAGCAGCTTAGGCAGTATTTAGAAAGTATATTCTTGTTCGGAATAAATTTGTCTAAAAAAGGGTTGCCTTTCCAGGAATTGAAACTTGTACTTCCTGTATTTTGGTTCAATCCCCAGCATTT # Right flank : CGGGTGGAAAGGCAACCCTTTTTTAGACAAATTTATTCCGAACAAGAATATACTTTCTAAATACTGCCTAAGCTGCTAAATCAAAGCTAGCTCTATTTCTATATTCAATTGGTGATATGTATCCTAAAGATCCATGAATTCTTATGTGATTATACCAGTAAATATATTCTGCAAGCTCTAATTTAAGCACTTCCAGACTTTCAAATCTATTTTGATATATAAACTCTACTTTTAGGATTTTATTGGTAGCTTCACTTACAGCATTGTCATAGGGATTCCCCTTCCTACTTAGAGAACGTTCTATGTTAAAGGCTTCTAGGATATTATCTATTTTTATATTATCATATTCCTTACCACGGTCTGAATGAAATATCTTTATATCTTTTAAAGGATAACGGCAGCTTAAAAGTGCTTTTTCTATAAGAGAAGCATCTTTATTGGGACCAGCTGAATAGCCTATTATTTCCCTATTAGATAGATCTACCAAGGTACATAAATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACATAGATTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 3 574842-575142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPJ010000001.1 Tissierella pigra strain MSJ-22 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 574842 30 100.0 38 .............................. CTCCAAGTCCCTATATCTACATTGTCCCTATTCCAAAA 574910 30 100.0 37 .............................. AACGTAGAAGCATATAGGGAATTTGCAAAATTAAGGA 574977 30 100.0 38 .............................. TTTCTTCATCTTCCACGATATTGACCATCGTTTCATAT 575045 30 96.7 38 .....................G........ ATCTGTTCTCTTGTTTCTTTTGCTCCACATACAGTTTC 575113 30 90.0 0 ....C...................C.T... | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 97.3 38 GTACATAGATTACCTATAAGGAATTGAAAC # Left flank : TTAGAAGAACTAGCTTCCCTATTATTTAGATGATAATATACTAGGCTTCTTGAGACCTTTAAAAGCTTACACATAGCACTAATACTATATTTCCCTCTATTAGAAATAATCAGGTCTACTTTTTGCCTAGTAGTAGTGCTGCCTGCTTTAAAATATCATTCTCCATCTCAAGTTGTTTATTTCTTTTTCTTAGTTCAATTAATTCCTTCTCCTGGTCCGTCATATTATCTTTAGCATTGAAGGATTCAGTTTTATTGTACCTCACTACCCATTGTCTTAGAGTAGATGGAGAGACCCCATATTGCTCATGTAGATCCCTATAGGTATGGTTACCTTGGTTATATATGTTAACTAATTGCTTCTTGAAATTTTCCTCATAATATTTTCTTGACATGATTTTCTCCTCCTAGTTTTATTATATCATGTTCGGAGAAAAACTGTCCTATCTAGTGTAACCTATCCAGGGTATTCTGTCTTTATTAGAGAGCTTATATCCTCAT # Right flank : CACATATCATCATAATCTATATAATTATTCTTACTTTGATATGTAACACTGAGATGTTTATAAAGTTTATTTTTTATATAAGATCAGAGGTAAAAGGCAATAGAATTAATCAACATAATAAGATTATAAAATATTTGAGAGAAAAAATGAAATGAATATTTCTGAAGGAACTGAATTATTGAAACTATCAGAAACTTGGATAAATGAGGTATTAAAGAAAATGATGTAAGACAGTATTATTTTAAAAGAGAGCAACAGTAGGTTGACTAAGTATATAATAAATATAAATAATTCAGTTATACTATATTTTGCATAAACACTATAGTGTAAAATTTTATTTCCATAAATAATTTAGACTACAATTATAAAAAGAATAATATATAGTTGATATGATTTTAAAACCCTTAGTCGATGAATATTATATAATTCATAGCAAAAACCTTCCTAAAGATATTGACAAAAAAGAAGGAAATTTTAGATTGAATGTCGAATAATATTAA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACATAGATTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 4 583891-587774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPJ010000001.1 Tissierella pigra strain MSJ-22 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 583891 30 100.0 35 .............................. CATCTATAGTATCAGCTGTAATTTCAATTCCTCCG 583956 30 100.0 35 .............................. TACGTATGTCGACTTGGAAGGACCTATTGGTCCAA 584021 30 100.0 36 .............................. CTTAATATCAACTCTTTTAATAGCTTTGTCGGCATA 584087 30 100.0 40 .............................. ATCTTACATTCTCTAACCTTAGTGATTTCAATGTATCCTT 584157 30 100.0 37 .............................. AAAATAGAAATGATATTCTTCATGCCAATACCAAAAT 584224 30 100.0 37 .............................. TAAATATACTTTCTAAAATACCTAACTATCCTCTAGA 584291 30 100.0 37 .............................. GCGAGACAAGTTATCAAGAGTATCAATGAACTTCATA 584358 30 100.0 36 .............................. TATACAACTATAGATACTTATGCAAGTGTAATATCA 584424 30 100.0 36 .............................. TACCTATAGAAGTATCAAATCCATTAACAGTATTTG 584490 30 100.0 37 .............................. ATCTTTTCGTCCTTACCAACAAGCTCATCTCTAATCA 584557 30 100.0 37 .............................. TTTTTTTTCATACAAACACCTACTTAGAAATTCTATC 584624 30 100.0 37 .............................. CACTAATTTTAGGCTGTAAAAGCCTCGCACATAGAAA 584691 30 100.0 37 .............................. AAGAAATTCTATAAAGAAAAAGATACTATAATTCTTC 584758 30 100.0 36 .............................. CACTATCTTTTAGAATATACCTACTATCATAATATT 584824 30 100.0 37 .............................. AAATAAATGTTCAAAACGTTCATTTAGCAGAAATAAC 584891 30 100.0 37 .............................. ATTTACAAAAGACAGAGGAATGGTCAAAAACTCTAAC 584958 30 100.0 37 .............................. TTTTTTCATAAGGTACTGGTGGTGTTTTATCTCCTTC 585025 30 100.0 36 .............................. TGATTCCAACAGCAGAAGAATTTGTTCAAGAAACAG 585091 30 100.0 37 .............................. ACGCCTAATGTAGCTACAGGTGATTTATATGGAGAAG 585158 30 96.7 37 .............................T AACACCCATCTCTTCCAGGTATTGATATTAGTTCTAT 585225 30 100.0 35 .............................. CAAATGTAGCTACAGATGCTGAATCAACAGCATAT 585290 30 100.0 37 .............................. AACCAATTGGCTTGGAGTGGAATGGCTGTAACAGAAG 585357 30 100.0 38 .............................. TTGGTAAAAGTATTAGAATTATTTTCAAAATTATAAAC 585425 30 100.0 37 .............................. CTATCTAAATGACGAACAAATAGCTGAAATAAGCAAA 585492 30 100.0 38 .............................. CCCATAATAGCAATCCAACCAGCTTTTTCCCAATCAGT 585560 30 100.0 37 .............................. CAATATCACTATCTGTCCATACATATTCAACCAAGCC 585627 30 100.0 34 .............................. ATATTCACTAAAAACTATACAAGCTTAAATCTAC 585691 30 100.0 35 .............................. TAGAACTCTAGAAATATCTCTTGCTGATAGATATA 585756 30 100.0 37 .............................. TTAATAAAATTCAAGAAGCTATGAATTATCATATAGC 585823 30 100.0 37 .............................. ATTGAAAACGTAAAAATAAGGAGACAAAAAGATTATT 585890 30 100.0 36 .............................. TTCCTTTATCTTCTATTATGTGTCTATTTGGAGATA 585956 30 100.0 37 .............................. TAGCCCTCTCATATGCTTCTAAATCAGTGAAACCATA 586023 30 100.0 36 .............................. TCATGATGCCTTTGTATATGAAAACAAAGCTAAAGG 586089 30 100.0 37 .............................. GTGGTATCTGATTTTACTTCATTCATTTTATTGACAC 586156 30 100.0 36 .............................. TGTCCACATGGTCTAGTTCTTGCTTTTCATTTAAAA 586222 30 100.0 37 .............................. AGGAATTAGCAGAGAATCCAGAAAAGAAATTTGTAAG 586289 30 100.0 37 .............................. TAAACTTTTCTAAGTTATGCAATCCATTTATTTCTAG 586356 30 100.0 35 .............................. ATAGTACATCATCTATATTGGGTGTTACTTCTGTT 586421 30 100.0 36 .............................. ATGTTGTATTGACTAATTTAGAATAAGTCATATATA 586487 30 100.0 36 .............................. CCGAGTAGACGCCATGGCTTCGGAGATTTATTGAAA 586553 30 100.0 36 .............................. CTAGAAAGATAAGAGATTATATTAAGGATTTTGAAG 586619 30 100.0 36 .............................. GTTGAAAGGTTTGGAGCAATCCCCGAAAAAAACAAA 586685 30 100.0 37 .............................. TCTTTGAGTCCTGTATATTGTCCCACTGTTTCCCTAG 586752 30 100.0 37 .............................. CCATATAAGGGGACAAACTTAAAGGAGGAATGAGAAA 586819 30 100.0 37 .............................. ATATTAGAAAGTGAGAGAGAATAGAGGTGTAGATATG 586886 30 100.0 35 .............................. TATACATATTCTTTAGTATTCCCTATGACCTCAGC 586951 30 100.0 37 .............................. GACAGTTTGAGAATAGGGACTGTATTTCTTGGTCGGC 587018 30 100.0 34 .............................. ATGCTTGTCCTATGTAATTACCTATGATGATATT 587082 30 100.0 38 .............................. TCTATTGTCTGAAAGAGGATACTCAAAATTATTAAAAA 587150 30 100.0 35 .............................. TCAGCCAGTCAAAGTTAGCTTTCCAATTTCTTTTA 587215 30 100.0 37 .............................. ATGATTTTCTTGATTCATATGCTTCATATAATGCTTT 587282 30 100.0 38 .............................. CCTGAAATAATACAAGCAGCAAGAATGATGGATACCTT 587350 30 100.0 36 .............................. CAGTAATTAATATAATCATGAACAATTAAAAAATAA 587416 30 100.0 36 .............................. TTCGTAAAGCCTAGTTTATTCCACAGTATACTTATC 587482 30 100.0 37 .............................. TGGTATCAAAGATTAAGTCAAAAAGTGGTACTGTTGC 587549 30 100.0 34 .............................. ATAACTGATTGTATTTCCCTTTTAGCTTGTTCAA 587613 30 100.0 37 .............................. ATCTTCTTCAGTATCTTCATCTTCCCAAACCTCACTT 587680 30 100.0 35 .............................. TTGCACCACTATCTCTTATAGATTGAGCGGTGATA 587745 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 59 30 99.9 36 GTACCTAGATTACCTATAAGGAATTGAAAC # Left flank : GTTATAAGCGACTTATAAGATTAGAATTATACAAAATACAAAAGCATATTACAGAGAACAAGCCATACGAAGGATTTATAGCGAGGTGGTAAAATGTTTGTGATATTATTTTATGATTTTGGAGAAAAAAGAGTAGGTAAGGCTTTAAAGACTTGTAGGAAATATTTAACATGGGTTCAAAATTCTGTGTTTGAAGGCGAAATTACAGAAGGTAACTTAAAGAAATTAAAATATGAGCTTGCATCTAAAATGAATAAGGAAGAAGATTCATTGATAATATATACCTTTGCAAATATGAGATACTCTAATAGAGAAGTATTAGGAATAGAAAAAAATCCCCAATCAATCTTTCTTTAAAATTTTGTCGACCCTTAATGATGTGAAAATTCCCAGGGATCGACAAAAGTAAAAACGACTTAATGAGCTGATGTTATAAAAAGATACCCCAAAATAATAAAATGTGATAATATATAAATATGGTAATAGTGCTATGTGTACGG # Right flank : CGTGATATTTGCAGGGAATTTGCAATCAATGAAGATTGGTGTTTATGTTAATCTAAAAGTAGACCACCATAATAATTGAAAACTGGTCCACCTTAAAATATAATACCCCTTGAAGATATCTTTTGAGGGGGGACAAGAGGTGATAAAGCTGGATCAGAAAGCAGAAATACTAATGAAATATTTTAGAGAAAATATGTCTCAAAGAGCAATAGCTAGAGAGATGAAGGTTTCTAGAACTACAGTAAGAAAATATATTAATAATTATGAATCTAAGTGTGAAGAAATAGAAGAACTAGCTAAGGATAATAATATTACTAATAGTGATACTTTAAATCTTGTTTCAGAAATGGTATCAGCACCTAAATATGATACTAGTAAAAGGACTAGAATTAAATTAACAGATGAAATAATAGAAAAGATAAATGAATTAATAAAAGAAAATGAGAGAAACCGGTTACTCGGTAGACATAAGCAATTAATGAAGAAAATTGACATACATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACCTAGATTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 5 590323-591358 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPJ010000001.1 Tissierella pigra strain MSJ-22 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 590323 30 100.0 37 .............................. TTGTTCGGCAGAGAAGAAAACTATATAGGTAATCTAA 590390 30 100.0 37 .............................. GTTATAGCACTGTAAGGTTTCTTAGTAGCTTTATTAA 590457 30 100.0 37 .............................. AATAATACCCCCATGGAAGATATAACATTCTCTGATA 590524 30 100.0 37 .............................. CAAAGAAAATATTTCCTTTTTGTGTTTTAGTAGGTAA 590591 30 100.0 36 .............................. TAATTTGCTCTATGGCCGTGATATAATTAGTGCCTT 590657 30 100.0 36 .............................. ATTTTTCTTCCTTTTCATCTTTTATTTCTTCTTTCT 590723 30 100.0 37 .............................. ATATATAAGAAAGATAAAGATATAATATTAAAAACAA 590790 30 100.0 37 .............................. TAGTCCTCATACCATATATACATTTAAATTCCTCCTA 590857 30 100.0 37 .............................. TAATGATATAATAAGAAAAAGAGCCATAAGAGGCTCA 590924 30 100.0 37 .............................. ATGTTAGTTGCAATTCTAGTTATGGCAATGACTCCAA 590991 30 100.0 37 .............................. TGTCAAATAACAAGGATTTTATGTAGTAATATTAATT 591058 30 100.0 38 .............................. CTACATAACTATTGCTACCTACTCTAGAATTATGGTTA 591126 30 100.0 39 .............................. ATATTAACAATGATTTTAGGTAATTTAAATATTGTTGAA 591195 30 100.0 36 .............................. AATATTTTTCTGCTCTTTCAAAATTCTCTTTGTAAT 591261 30 100.0 38 .............................. GCACCTAGCAAACTAGATACACACTATACCGACTTACC 591329 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 100.0 37 GTACCTAGATTACCTATAAGGAATTGAAAC # Left flank : CCAGGAACGGGTAAGACCCATCTTTCAATAGGACTGGGCATAGAAGCCTGCAATACGGGCTATAAAGTGTACTTTACAACAGTAGCATCCCTAATAAATGAATTGAAAGAATCCAGAAGTGACAAGAAATTATATACTTTTGAAAAAAGATTTGAAAAGTATGATTTAATCGTGGCAGATGAATTAGGATATATTTCTTTTGACAAAGAAGGAAGTGAATTACTTTTTACATTTCTCTCCCTCCGGGCAGAGAGAAAGTCTACAATAATAACTACTAATTTATCATTTGATAGATGGAATGAGATATTCAATGACCCAGTTTTGACAGCTGCATTAATTGATAGATTAACCCATAAATCTTATGTAATAAATATGAATGGTGATTCTTATAGGATTAAAGAAACTAGGGAATGGTTAGAAGAAACCAATTAGTTTACATTACCAAGTGGTACAGTTTTCGATTATTATATGGTACACTTTTCAGTTGACAAATACAATTG # Right flank : CTTATTAATTCATTGAGTAAATTTAGCTTTTCCAATTGTGTACCCATAGGCATCCAACTTCAAAGTTTAACTATTTATAAAAACTTTCTGCATGTACAATAGTGTCAACGACAATCTAATTCTACATAAAAAAGTCATTTAAAAAGTGCAGAGAATTTATTTATTTAAAAGAGTATTTGTGATTTCTTTTCTAGAAGACATATACTCTTTTCTATCTTTTAATCTGTATGATTCTCCTTTAATATTAACTACCGTTGCGTGATGAAGTATTCTATCTAAAATAGCAGCCGCTATTGTATTATCTGAAAATACTTCACCCCACTGTGAAAATGACTTATTTGAAGTAAATATAGTTGAACACTTTTCATATCTTTTAGCTATTAGTTGGAAGAATAGGTTAGCCCCTTGAATATCCATAGGAAGATACCCTATTTCATCTATTATCAATAGCTTGTACTTAGCGTAATGTTTGAGTTTCTTTTGAAGTTGGTTTTCAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACCTAGATTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 6 594776-595139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPJ010000001.1 Tissierella pigra strain MSJ-22 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 594776 30 93.3 37 A.C........................... TATCAATCTCTTGTAACTGCCCTGTAAAGACTCTAAC TA [594780] 594845 30 100.0 35 .............................. TACCTTTTGTGGAAGACAAGGACACCAAACAATTT 594910 30 100.0 39 .............................. ATATACTCCACATAAACTCCACATTCACTTCCTTGAAGT 594979 30 100.0 35 .............................. TATCTATGGACAAGTGATAATAAAGGTGGAACATC 595044 30 100.0 36 .............................. ATGGTAGAATGTGAAATAATCGGAGAAGTGCATTTA 595110 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 98.9 37 GTACCTAGATTACCTATAAGGAATTGAAAC # Left flank : CGTCTTATCCACTCTCCAGAGTACTGAATGTCATATTTGTTTTTAATATAATCTGCTAATAGATTGCAAGTCCATGAATATGAATTAAAGCCATGGTCTATAGGCTTAGTCTCTACTAAAGTTCTTAATAAATCATCTTTCATTTCATCAGTAAATGTCCCTATAGATCCTCCTCTATGGTCTTCAGTAGCCTCAAGGCCATACTCATTCCATTTATGAATATATTTAAGGATTGTAGGTCTAGACTTACCTAATATATTTTCTATTGTTTCGGACTTAATACCTTGATAACGCATCATAATTGCAAGTATAATTTCTTTTTTAAAATTATCATCAGTTTTTTCTCTAATATCTTTTAATTGCTCTATTGTGTATCCATGTAAAGTTTTAACTTCTACGGCTTTTCTTCCCATGCTAATTCTCCTTTGTTAATTACTATAGAATTAGTTTGTGGAAAGAAATTTACTTTATTCACTGATTATTTTAATGTATTGAGTTGG # Right flank : CTCTATAGAAAATAACTATTTTGTACTGGAAGTGATACTGGTACCTAGTGGAGAGGTTACACTTAGTTAGGCAGTAGAAACTCGGACATGATATAATAAATAAAATTATCTTGGAGGTTAATCATGTCTAATAGATCCAAAAGGTATACAGAAGAATTTAAAAATCAGATAGTTGAATTAGTTAAGGATGGTAAAAGCCCATCTGAAGTAGTAAAGGAATATAATATTGCCAGATCAACTGTTAATAAGTGGATCAATGACTATACTACATCAGGTTCTTTTAAAGCTAAGAAAAGAAAACCAGAGACTAAAAATGGAGAATGATATTTTAAAGTAGGCGAAGCTGATAATAGGACGAAAATAGCTATTATTAAGGCTAATAAGCATAAGTACAGTATCAGAGCCATGTGTAAAGCTTTAAAAATAAATAGGAGAGTTGTACTATAATTCTACAGAAAAATCTTGTTATAGTAAGCTAGAAAATGAAATAATAGCTATCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACCTAGATTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 7 2432583-2433077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPJ010000001.1 Tissierella pigra strain MSJ-22 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================= ================== 2432583 29 100.0 34 ............................. TTAATTTTTTTTTGATTCCTTCATCTAGCATTTC 2432646 29 100.0 36 ............................. AGGAATTTCTGATAGATCTGTAGGCTATTATGAAAA 2432711 29 100.0 36 ............................. TAAATAATGACGGAACTACAGAAGTAGTAGATGTAA 2432776 29 100.0 36 ............................. TGTGTCAATATCTTTATTCTTTTTTGCTTCTTCTTT 2432841 29 100.0 177 ............................. ACGAATCTTTTGGTTGCTTGGTTTTACTGGGCTGTATGGGTAATTTTTGTCGACCTAGCAATTTATTTGTAATATCATCTTATTTTACTACTTGTTATTATATCTAAACATATCATACACATCTATTTATAATGATTTGTCAATCTACTATAATATTTACACTATTATAGATAGACA 2433047 29 75.9 0 ..A..........A.A.A..A....TT.. | AG [2433067] ========== ====== ====== ====== ============================= ================================================================================================================================================================================= ================== 6 29 96.0 64 ATTTACATTCTAATATAGTTCTATTAAAT # Left flank : ATAGTTCCCCTATGTAATAACCTTAATACCTTATACCATTCTGGTCTATTAGGTATGTAATTAAATTCTAGTTGTTTTCTTATAATTTCTTTATTATCTATGATAAAGTTTGTATCATCTTTCAAAAGAACTATACTGTTTTGCAAATCTTGTTGTGAAATTGTTTCCCTTATGTCCAAATCGACAGAAATGTTATCCTGATAGACCAAGATTAATATACCTTTAGGGTTTTCAGTAAAATTTATCATTACGGGATTACCATAGAGTGAAATAATTTCATCAACTCTATGACTATCAATGTTGCCTAAAATTATTAAGTCTATGTCAGAAAATTTTGTTGCTGCGCCTCTTGCTAAAGAACCCTTTAAAATCATTGAAAATCCATTATTTTTACAAAATTCATAAACAGATTCAATATAACTTTTATAATTTGATGAAGGATAATCTATTTCAAAATTAAGCATAATAGCCTCCTTTCTAATCAAAGACAATACTAGCTC # Right flank : TCATGAACTATTCCTAAAAAATCTTTTTCTACTTATCTTTCATTTTCACTTGGAAATATTAGTTAAGAATATCATATACAAGTATTATATATCAAATAAGGTTAAAAATAAATTAATTTGATATTATTTTATATTAAATTAATTTAAACGGTAATTTATAAGAAGTTTATATTTTTCATCATAGTATTATTTCAACTTATCCATATCCTCTAAAGTATATTTGTTTTTATAAAATTTCTAATTTAAGTAAATATTTTATTGTAACACTAAAAGTTATAATAACCCCTAGTGTAAATTCTATTACTTCCACTAAAAGCAGTATAGACACATTTTTCTAGTTAATTCTCTACCGCCTATATAGTTACCCCCTAGAAATATATTCTATATTTATTTAAAAATTTTTTTAAAAATAAAAAAGAACCTAGATTTTGATATGATACTTCTAAAGTAGACAGTTTAATTAATTAAAATTAGATTATCTACTTGGAGGTATTTTTTAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTAATATAGTTCTATTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 8 2482573-2481562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPJ010000001.1 Tissierella pigra strain MSJ-22 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2482572 29 89.7 36 ......GG....G................ ACTAAAAAAAATCACAAAGAATACACAGATAGATTA CT,CTG,A [2482556,2482560,2482570] 2482501 29 100.0 36 ............................. ATAGTTAATTGTACATAATTTAAAGCAAGTTCTCCT 2482436 29 100.0 36 ............................. CTGCTACTCCTGTAGCAACTGCATTTCCACCACTTA 2482371 29 100.0 36 ............................. TTATATCTTCTACCTTTTTATCTAATTCTTCTTCTG 2482306 29 100.0 36 ............................. CCTAATAGGAAGTATTCTATATTGAGGAATAAATAT 2482241 29 100.0 36 ............................. TCCATAAATTCCAAAGGTTTCATCTAAAATTCTCAT 2482176 29 100.0 36 ............................. ACATCTTTAAAAGAAAATAAGGCTATAGGAGCAATA 2482111 29 100.0 36 ............................. TAATAAAACTGATTTTTCAAAAGTAAAGGGATTTAA 2482046 29 100.0 36 ............................. AAAGTAGGTGATTAGATGGGGTTCAAAATAGAGCAT 2481981 29 100.0 36 ............................. TTCTTTCCAGCTCCTCTACCCATGTACCAAAAGTGG 2481916 29 100.0 36 ............................. AAACACCGAAAGAGGTTGAGTTTATTTCCTCATACC 2481851 29 100.0 36 ............................. CCATCTTTTTTTCGATAAGTAATATTGTATTCCAAC 2481786 29 100.0 36 ............................. TGATTGTTCATCGAACCAATTATAAACAATATCCTC 2481721 29 100.0 36 ............................. TCACGTAGTATCTATCACCTATCTGCACTATCTCGT 2481656 29 100.0 37 ............................. TAGAAAGTCTCTCATAGAGTTCACATATACTGTTTGA 2481590 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 16 29 99.4 36 ATTTAATAGAACTATATTAGAATGTAAAT # Left flank : TAATAAGGTCAGACAATGGTCCACAATTCATTAGCAATAAATTTGAAGATGCTTGTAAGGAGTTAAAACTAGAGCATGAAAGGATACCATTTAAAACTCCAAACAAAAACGCTCATATAGAATCTTTCCATAGATTACTAGAGGATGAATGTTTATCAAGGTACGAATTTAAAACCTATGCTGAAGCCTATGAGGCAGTATCTGAGTATATGAAATCTTACAATAAGTTTAGAATTCATAGTTCTTTGGGTTATATCTCTCCAATGGAATTCTATCAAAAAACCTTAGAGGGAACAGTAAAACCTTTAGTAGTAAGACTTTAATGTTTTTTCGCTTAGTAGCAAATCACATAAATATTTAGCTGAAATCAAGGGCTTGCGATAGCAAGGGCGTAGCCTTTACCCTTGATGAGGATAAATATTTATGTATAATAAAAAAAGCGATAAACATTAAAATATAGATAAACTAACAAAAAGAAAGTATTCGTGAGTTTTTGTCCA # Right flank : ACTGGATAGGTTACACTAGTTAGGACAGGTTTTCTCCGAACATGATATAATAATATTAGGAGGAGAAAATCATGTCAAGAAAATATTATGAGGAAAATTTCAAGAAGCAATTAGTCAACATATACAACCAAGGTAACCATACCTATAGAGATCTACATGAGCAATATGGAGTCTCTCCATCTACTCTGAGGCAGTGGGTAATAAGATATAATAATACTAAATCATTTAATGCTGAAGATAATAGAACTGATGAAGAAAACAGGGTAATAGAACTAGAAAAAAGAGTTAAGCAGCTTGAGATGGAAAATGATATTTTAAAGCAGGCAGCACTACTACTAGGCAAAAAGTAGACTTGATTATTTCCAATAGGGAGAAATACAGTATTAGTGCTATGTGTAAGTTTTTAAAGGTCTCAAGAAGCTTGGTATATTATCACCTAAATAATAGGAAATCTAGTTCTGTCAATAAAGATTCAGAGATAGAGAAACATATAATAAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAATAGAACTATATTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 9 2484128-2487348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPJ010000001.1 Tissierella pigra strain MSJ-22 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2484128 29 100.0 38 ............................. CTTGCTAGAAGTACAGCAATAACAATGGCTGGTGACTT 2484195 29 100.0 36 ............................. AAATAGTCTAGAGTATATCTTATCAGAATTATCAGC 2484260 29 100.0 36 ............................. AAGTTCTTGTTTTTCTTCGGGAGCTTCATTTTCCAC 2484325 29 100.0 36 ............................. GTAATCTATGTTTTCAAATTGAGGTCCATCAAACTC 2484390 29 100.0 37 ............................. GCAATTATAATAATGATCCTTGCTCCCATCTTCTTTC 2484456 29 100.0 35 ............................. TCTACTACGGATGAACATGCACTATTGATTATATA 2484520 29 100.0 35 ............................. CTAATTTTTTCCATTCTTCATTTAACCTAGGAATT 2484584 29 100.0 36 ............................. GATAATATTAAAATATCTGAAATGGCAGTAAAAAGA 2484649 29 100.0 36 ............................. AATCATAGCAAATGAAGATATTGAAATAAAAGGCAC 2484714 29 100.0 36 ............................. GAACGTGAAAAGATTTATCTTGTCTTCAATCCCTTT 2484779 29 100.0 36 ............................. GCCTTGCTCTGTTAGGTTGAAATGTTCTTTACTAAA 2484844 29 100.0 36 ............................. ACCTATTTTAGCAGCAGCAGTTCCTATTCCTAATAT 2484909 29 100.0 36 ............................. CATTTGTGAGCATCTGAACCAGGACCTTTCTTTGAA 2484974 29 100.0 36 ............................. TAGTATCAAATCAATCCATGCTTGCCCTTTAGAAAA 2485039 29 100.0 36 ............................. TTTAGGAGTTTATGATGATGTAGTAGTTGAAGGTCT 2485104 29 100.0 36 ............................. AGAAATAAATATATTTGATTATGAAAATGAAACAAA 2485169 29 100.0 36 ............................. AATGTAATATAAAGAGAGAAATAAGAGAGGTTAAAA 2485234 29 100.0 36 ............................. TATGTAATATTATCAATAAAACGATGAGCGTTGATG 2485299 29 100.0 36 ............................. GTTTTTTTCTTGTAGTGTAGGCTCTGTAGGTAAAAT 2485364 29 100.0 36 ............................. TGGAAATCCATGTGAGTATACTATTTCTCTTGCTTT 2485429 29 100.0 36 ............................. TTTTTCTTCAAATCCTTTCATCTTACTAGGTTGTGA 2485494 29 100.0 37 ............................. TCTTCACTACCTGCTAAATAGGTAGTATCTTCTGTAC 2485560 29 100.0 36 ............................. ATTCCCGCTAGAAACAAAGTATCTATAGATATTTTT 2485625 29 100.0 35 ............................. CTTTAAATAAGGTTTCAACTCCACCTAGAGATTGT 2485689 29 100.0 36 ............................. AAAAAGATTACTTTCTAAATATATAGATGAAATGGA 2485754 29 100.0 38 ............................. AGTATTAGACTCTCTTTCAAAGTTATATAATGTAGATA 2485821 29 100.0 36 ............................. GCTTAATAGCATGTCACGAAATGGGATTTGAATTTA 2485886 29 100.0 36 ............................. CTATTTTAACTAAATCATGCACATCTTCAATTAAAT 2485951 29 100.0 36 ............................. AATATGATGTGTGTATGATTGACTTGTTTGAGAAAT 2486016 29 100.0 36 ............................. GATTTATCAATGTATTAGCTGTAACTGGAGATTTGT 2486081 29 100.0 37 ............................. GAGCAAGTATTAGGAGCACCAGTTAAATTCTGTGACA 2486147 29 100.0 36 ............................. AAATTTTTCTTCTGCTAGTAGTAAATCCATTGCCTT 2486212 29 100.0 36 ............................. CCAATCTAAAGGTATTAAACCTTCTATGCCTTGTAG 2486277 29 100.0 36 ............................. GGACAGTAGCCTTTACATACTAGCATAGCTCAATGG 2486342 29 100.0 36 ............................. AAGGACAGTTTTAATCGAAAGCAAACCATATTTTGT 2486407 29 100.0 36 ............................. AAATAGACTTGTTTTCAGTACCTAACAAATTTGTTG 2486472 29 100.0 37 ............................. AAGAGAATAAATAGGGGCGAATCAGCCCCTTGGAGGT 2486538 29 100.0 36 ............................. TAGGGGGTCGGTGAAACACCCAGTCCCTACAAAGAG 2486603 29 100.0 36 ............................. ATATTAAAAATAAATACATTGAAACGAGTTGGGAAA 2486668 29 100.0 36 ............................. TATCAGTTTCTTTATTGATAAAAGTTACATGCTTAC 2486733 29 100.0 36 ............................. GCATTAATTAGCAATCCTTCTGATTTTGTAAGATTA 2486798 29 100.0 36 ............................. ATAGAGGAAATAGACTTGTTTTCTGTAGCAAACAAA 2486863 29 100.0 36 ............................. TATATTTATGATTTCATCACCTACAAGGACATTAAA 2486928 29 100.0 36 ............................. ATGTTCACAAAATAGTGCATCCATATAGCTGTGGTG 2486993 29 100.0 37 ............................. CAATCCATTCAGTACCATTCCATTTAGGTCTATAAAA 2487059 29 100.0 36 ............................. AGTAACACTATACTCCCCTCCATAAACTGTTATAAT 2487124 29 100.0 36 ............................. CTCCGTTCATGACATTATGAATCATCATCATAGTAT 2487189 29 100.0 37 ............................. TATTGGTGTATAATTTACTTTCAAGCATGATTTCCAA 2487255 29 100.0 36 ............................. GGACATAAAAAGAATATAAATATCCCTTGTGGTTTT 2487320 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 50 29 100.0 36 ATTTACATTCTAATATAGTTCTATTAAAT # Left flank : TTAATCCAAGTATTTTAAGTACCTTAGTTACTGGATAACCATACCCTAGCCATTTATTAGCTATATTTACTTTATCTTCTATCTTTGGGTCGTTTTTTTTAGTAGGTCTTTAAGAATAGCTATTTCAAGGTCCTTTTCACCTAATAGCTTCTTTAATTGCTCATTCTCCTTATCTAAGGAGGAATTAGTGCTATAATCTATATTAAGAGGATTATTGGTTTTATTAGCTGATTTTGACTCCCTAACCCATCTTGTTACTGTACCTGGAACAATATCATGTTTTCTTGCTACTAAAGTTGCATTACCAGTTTCCTCTACTTCTTTAACTATTTGTCTTTTAAATTCTTCTGAATATCTTGTGTTTTTACTTCTCACTTTGGCAACCTCCTATTGATTATATTTTACTATAATCGTGTGCGATTGTCCAAAGTGGTTAGGGGGCTAAATAGATATAGTTCTATTAAATTGAATGTGGAAATATATTTGTATCTGATGGAGAT # Right flank : TGCGAATCTTTTGGTTGCTTGGTTTTACTGGGCTGTATGGGTAGTTTTTGTCGACCTAGCCATTTATTTCTAATATCATTTTATTTTCCTACTTATTTATTATAGCTAAACCTATCATACACATCTATTTATAATGATTTGTCGATCTACTATAATATTTACACTATTATAGGTAGACAATATATATTCTAAAAAAAATTAGACATTTTATCATGAATTATTCCTAAAAATCTTTTTCTACCTATCTTTCATTTCCACTTTAAAATCTTAGTTAATAATATGATATACAAGTATTGTATATCATATTAGGTTAAAAACAAATTAATTTTATAATAAATTAATTTAAATGTTCATTTATAAGAAGTTTATATTTTTCATCATGGTATTATTTCAACTAACATATATCCTCTAAAGTAGATTTCTTTTTTATAAAATTTCTCATTAAGTAAATATTTTATTGCAGAATTAAAAGTCATAATAACACCACTAATCAAAAAACT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTAATATAGTTCTATTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 10 2557857-2558340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPJ010000001.1 Tissierella pigra strain MSJ-22 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 2557857 29 100.0 36 ............................. TAGAAACGCTATTATGATGATTCATGATCCAATGCT 2557922 29 100.0 36 ............................. AGGGGCAAAAGTAAAAGATACTCAATCGCTATATTA 2557987 29 100.0 36 ............................. TCAAGTGCTGTAGTTCCCGTTATTCCTATTTCTTGT 2558052 29 100.0 36 ............................. CCTAAAAGATAAAGCAGATAATGCCTTGAATAGTCT 2558117 29 100.0 36 ............................. AGAATATTTACTTGGAAAAGAATTATTATTGTGTAC 2558182 29 100.0 36 ............................. GATAATAAATGTATCAGCAAATATTACATTAGCAAA 2558247 29 100.0 36 ............................. TACACTCTTTTTTATTTCTACAACTCCACAATCTAC 2558312 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 8 29 100.0 36 ATTTACATTCTAATATAGTTCTATTAAAT # Left flank : TAGGTCCTTTTTTATCAAAAACTACACATATATAATCCGGATTAATTTCCTCTTCCACTTTATATAACATTGTTAAAAATCCATAAACTCCATTTGTATATACATTATTTTTATTGGACAATAAGGGCAGAGCATAAAATGCTCTATGTATTAAAGCACTTCCATCTATAATCATCAATTTTTTCTTATCCATTAGATCACTCCATTCTTTACTACTTTATAGTATACCTCAAAACATAATTTCAGTAAACAAAAGGTAAAATAAAATATTGATTATTTTAGTATTTTATGCTATTATATTTGAGTAATGTATTTGCCGGTGTGATGGAATTGGCAGACGTAGTGGACTCAAAATCCACCGGTGGCAACACCGTGCCGGTTCGAATCCGGCCACCGGCATTAGTTCTTCTCGCACAAACAGTAGAATATAAAAGAAAAGATAGGAATTAAATCCTATCTTTTTTTGTTTTTATAAACTTCTAACAATCAAAACACTTGCA # Right flank : TTGGACCTATGTCAATATAGTAGACACATTTTCTCGAATAAACTTTATGCAACCCTCTTAGAATTATCTTCCCATTCTTGGGGAGTGATATAGCCTAAGGAGCTATGTATTCTTTCTCTGTTATACCATGATTCAATATACTCAAATATTGCAAGCCTGGCAACATCAAAATCGAAATACTTAACTAGATTAACTTCTTCTTTCTTCAATACTGAGTGAAAGGATTCTATACAAGCATTATCATAGGGGTTTCCTTTACCGCTAAAGGAGTGAATTAGTTTGTGCTCTTTAACATATTTCTCAAATTCATAACTTGTATATTGACTTCCTAGATCACTATGAAGAATTAGACCTTCAGCAGGTTTCTGAAGCTTATAGGCATTATCTAAAGCCTTTATAGCCAATTTAGTATCTATACTTTTAGACATAGAGTATCCAACTATCTTCCTACTATTAAGATCCATAACGGAAGCAAGATAGCACCAGCCGTCTTTAATTGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTAATATAGTTCTATTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //