Array 1 40-1577 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEV01000021.1 Salmonella enterica subsp. enterica serovar Typhimurium strain N32044 NODE_21_length_81895_cov_2.70011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 40 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 102 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 224 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 285 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 346 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 407 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 468 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 529 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 590 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 651 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 712 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 773 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 834 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 896 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 999 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1060 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1121 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1182 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1243 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1304 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1365 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1426 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1487 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1548 29 96.6 0 A............................ | A [1574] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAACCGAAAATGCAGGTGGGGTAACGAATGCGAGATTGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 254-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEV01000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain N32044 NODE_30_length_62744_cov_2.05776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 253 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 192 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 131 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 70 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GAAAATGCAGGTGGGGTAACGAATGCGAGATTGAGATCGGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17879-16386 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEV01000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain N32044 NODE_30_length_62744_cov_2.05776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17878 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 17817 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 17756 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 17695 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 17634 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 17573 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 17512 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 17451 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 17390 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 17329 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17268 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 17207 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 17146 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 17085 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 17024 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 16963 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 16901 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 16840 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 16779 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 16718 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 16657 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 16596 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16535 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16474 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16413 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //