Array 1 88231-89600 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYX01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NP999 NODE_7_length_213296_cov_84.909736, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88231 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 88292 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 88353 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 88414 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 88475 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 88536 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 88597 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 88658 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 88719 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 88780 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 88841 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 88902 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 88963 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89024 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89085 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 89146 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 89207 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89268 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89329 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89390 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 89451 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 89512 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 89573 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105733-106904 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYX01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NP999 NODE_7_length_213296_cov_84.909736, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105733 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 105794 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 105856 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 105917 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 105978 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106039 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106100 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106161 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106223 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 106284 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [106326] 106326 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106387 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106448 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106509 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106570 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106631 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106692 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106753 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106814 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106875 29 96.6 0 A............................ | A [106901] ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //