Array 1 7282-6585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVMU01000073.1 Streptococcus pseudopneumoniae strain 289_SPSE 515_7281_153662_340+,...,80+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7281 36 100.0 30 .................................... AACTATTGCGACTTTTCTAAAATCAAGGTA 7215 36 100.0 30 .................................... TATTTCGTGAAATGATATAATGGTTATAGT 7149 36 100.0 30 .................................... AACGACTTGTCAGGAGGTATCTAATGCCTT 7083 36 100.0 31 .................................... TCTGAAACGTTTGAGTTTGGGGACACGTTAC 7016 36 100.0 30 .................................... CTAACAAGCTAGTAGCAAGTAATATCTTCA 6950 36 100.0 30 .................................... CAAACACTATCTGGGTATACACTAACAATC 6884 36 100.0 30 .................................... AAAACTTTGGTACAGGTGTGCCCCCTTGGA 6818 36 100.0 30 .................................... TGGATGGTCACCGGGAACACTTTCAATCAA 6752 36 100.0 30 .................................... TTATAATTTACCTGTAATTACAAAGAAATA 6686 36 100.0 30 .................................... CGGCGACTGCAGAGAAAGGGCTACCGAGAA 6620 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : ACATTAAAAGCTACTCATTTTTCAAGTAGCTTTTTTTCTTATTCAAGTTTACATATTAGTCGTCACAATCCCATTCCCTTGTAGAAAAGCAACACTGCGAGTCCTACGAATAACACTACCGCTCCTAACCTCTGGCTAGTACTATACATCCGTCTTTCTCCTCGGACTGGAAAGATAATTGCTAGAAATGCTCCACCAACTGCTCCCCCGATATGGCCTGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATAATGTTAACCACAAAAAGTGTCAGATAAGATTGCCCTAGCTGTTGGATATAAGGATTACGCGTTGCATAGCGAAGAACAATAATCGCGGCAAATAGCCCATAAAGAGAGGTAGAGGCTCCTGCTGCTAAGGATTTGGGACTAAATACAAAAACAAAGAGATTGCCCATCATTCCTGATAAAAGATAGAGAAAGAAAAACTTCTTGGATCCGAAAATTTCCTCTACTTGCCTACCAAGATAATAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 22713-23342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVMU01000074.1 Streptococcus pseudopneumoniae strain 289_SPSE 516_23365_821811_340_,...,199+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22713 36 100.0 30 .................................... GGGGTAGATGTCTGGACGGCTGTTCAAGCC 22779 36 100.0 30 .................................... ATGAAGAAATGGAAAGAATACGTGAAGAAT 22845 36 100.0 30 .................................... ATGTGGCTTCTATTCCATTCGCTACCGCCT 22911 36 100.0 30 .................................... AATAGTATAGGTTAGTAGTGACATAATCAC 22977 36 100.0 30 .................................... TAAGCAATTATCTGATTATATCCAAGTATT 23043 36 100.0 30 .................................... CCAGTTTATCTTTGTTAATGATAGACTTAG 23109 36 100.0 30 .................................... ACCTTGTCCAGGACGTCCCACAATGACTAT 23175 36 100.0 30 .................................... ACATCAAGAGCGAACATACTCACAAAGAGA 23241 36 100.0 30 .................................... AAGTCATACAACGAACGGTCGAATATCCCT 23307 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCTCTAGGGGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGTCCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGGGTCTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAGCCTGACGAGCTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : AACTATTGCGACTTTTCTAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //