Array 1 340871-341919 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033600.1 Pasteurella multocida strain CQ6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 340871 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 340931 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 340991 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 341052 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 341112 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 341172 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 341232 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 341292 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 341352 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 341412 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 341472 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 341532 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 341592 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 341652 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 341712 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 341772 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 341832 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 341892 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1619741-1616893 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033600.1 Pasteurella multocida strain CQ6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1619740 28 100.0 32 ............................ ACATGACGAAATTAATAAAATTGTTGTGCGAT 1619680 28 100.0 32 ............................ ATTTTTCTTTTGCTGTAAAGACAAGCTGATCA 1619620 28 100.0 32 ............................ TGTTTCAAGCGAACGTACAGCAACAGTGACTG 1619560 28 100.0 32 ............................ GGATGGATTGCTTCTAAGTAGCCTTTGCCTTC 1619500 28 100.0 32 ............................ TTGGACTTGTGTCAGTAACTGTAACCGCTCAA 1619440 28 100.0 32 ............................ GTTGCAATTCAACGTGGTGAGCAAGAAATCAA 1619380 28 100.0 32 ............................ GTTGGCCGCTACAAAATTGTCACTTTCAATAC 1619320 28 100.0 32 ............................ GCTGTATAAGCGGTTAAAAAAGTTATATTTTT 1619260 28 100.0 32 ............................ ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT 1619200 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 1619140 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 1619080 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 1619020 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 1618960 28 100.0 32 ............................ CAAAAGATTGAATTACATCATCGGCTACAGAT 1618900 28 100.0 32 ............................ GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT 1618840 28 100.0 32 ............................ GCTCCAGTCGCTTTTAGTTGCGCTTCGGTGCG 1618780 28 100.0 32 ............................ ACTTAGAACTCCACCGGCTCTCGATTCTTCAG 1618720 28 100.0 32 ............................ TCGCCAATATAAGCATTAACATTCACATCAAC 1618660 28 100.0 32 ............................ GTGCCGAAATTGCACAAAGCGGACTTTGCACA 1618600 28 100.0 32 ............................ TGTACCCGAAACAACTTGCAGATTAGCGCGAG 1618540 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 1618480 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 1618420 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 1618360 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 1618300 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 1618240 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 1618180 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 1618119 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 1618059 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 1617999 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 1617939 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 1617879 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 1617819 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 1617759 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 1617699 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 1617639 28 100.0 32 ............................ ATTGCCTTTCGTTGGGCAAAAAAGAATGTTTA 1617579 28 100.0 32 ............................ ACCAATAGTCGTCGCGCTCAAAATCAGGTAAA 1617519 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 1617459 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 1617399 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 1617339 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 1617279 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 1617219 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 1617159 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1617099 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1617039 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1616979 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1616919 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.3 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //