Array 1 192227-193658 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQI010000005.1 Cronobacter turicensis strain HA18060 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 192227 29 100.0 32 ............................. GCCTCCGCAATCCCCGCCGAGGCGTTACCACC 192288 29 100.0 32 ............................. TCAGGTCATGGCCCGGGCGGTGGACGTGGTTG 192349 29 100.0 32 ............................. ACCCTGGCCTGGTCAGGCACGTACTCGATAGA 192410 29 96.6 32 ............................T GATACACATTTGCTAAATATACACGTGTATAT 192471 29 100.0 32 ............................. CCTGGCTGCACAGCTGCGACCCGTATCACAAC 192532 29 100.0 32 ............................. CTACTGGCTTGCACCTTGTGCCATCCTTCCCG 192593 29 100.0 32 ............................. AGCGCTTCTTCCAGATAGTCGAAAATTTCCTG 192654 29 96.6 32 .....................T....... CGCCAGCGGTTTAACCGCCGCTTTGCGTTTGC 192715 29 100.0 32 ............................. GAATTTATTCTGTTATAACGGAGTGGTGGCCG 192776 29 96.6 32 ..........T.................. AACTGGACGACCAGCGAAAAGCCGGGGAATAA 192837 29 100.0 32 ............................. TGAATCGGGGTACACGAATGAACGCCGCGCCC 192898 29 100.0 32 ............................. TCGGACGCCGGTACGCTCATGCCGTTCTGCTC 192959 29 100.0 32 ............................. GGGCTTAAGGAAAAAGCGTTGATGGCCGGTGC 193020 29 96.6 32 .A........................... CCCTTACCCGGCACATACGGAAACACACTCAA 193081 29 100.0 32 ............................. CCCTCAAATACTGCCGCGTGCGGCGCTACGCC 193142 29 100.0 32 ............................. CGGCTACATTTACCAGTCCATTGACAACGCCA 193203 29 100.0 32 ............................. GGGCATTTGGCCGTTCTGCTATTTCTGAGAAT 193264 29 100.0 32 ............................. GCAACCATCATCTGGAAAGAAGCAAAAGGCAC 193325 29 100.0 32 ............................. GTCAGCCACTTTAAGCTCCACGGGCCTCGCAT 193386 29 100.0 32 ............................. ACCATTAAAATAAAATAACTCAGTTCGCTCAC 193447 29 100.0 32 ............................. CGTCCAGCACAGGCAGCAGAAACGGCAGCAGT 193508 29 100.0 32 ............................. GCCGGTGTTGGTGCGGTTGCGTTTTCTGTACT 193569 29 93.1 32 ......A..........A........... CATCTCCTTATCCTTCTGGCGCTGCTGCGCTG 193630 29 93.1 0 ..........................A.A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.9 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAATAACATCGCGTTTATCGTCGTTAACATCAATATCAATTACCGGCGGCCCGCCGTGCTCGGCGATCTGCTGACCGTCACAAGTCAGGTGAAACAGCTTAACGGTAAAAGCGGGATACTAAGCCAGGTCATCACGCTGGAGCCTGAAGGCGAGGTCGTCGCCGATGCGCTCATCACCTTTGTGTGTATCGATCTGAAAACTCAGAAAGCGCTGCCGATTGACGGCGAGCTGCGTGAAAAACTGGAAAAACTCACAGGGTAAATTCTGCAATAGCGGTGTCTGTGCCCGTCATCGTGGATTTATCGCCGCTGAAGATAAACAATCCGGTAGATGTTAACGGCCCACGAGCGTTGCTGAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTTTGTGGCGATGAAAGTCCATTAATTTCAGTAGGTTATATTTAGT # Right flank : AAACTTTGTTGGCTGTACGAACAGCGCGACGCTGTCAGCCCCATTTCCCGCCACATTCTTCAGCACCGTTTATACTTCAAAGCCATTGTTCAATTTTAAAGTCTGCGCAACAAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGCAAAGGGTTGCACGCGCATCTCATCTGCCACTGCCTGCTTATTGAAACTGAACATCACGGGCTGGTGTTGGTGGATACCGGTTTTGGTTGCGATGATATGCGCCACCCTGGACGCCGTTTGCCGCTCTTTTTCCGGGCGCTGAACAATATTCAGTACCGGGAATCATTAACGGCGCTGCATCATATTAAGGCACTCGGCTTTAAGTCGGAGGATGTCCAGCACATTGTGCTAACGCATCTGGATTTTGACCACGCGGGCGGCATCAGCGATTTTCCGCACGCGCAGGTGCATTTGATGCAACGGGAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 220355-221236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQI010000005.1 Cronobacter turicensis strain HA18060 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 220355 29 100.0 32 ............................. GGAGATCCTCGCAATCACAGTCAATGCCGCGG 220416 29 100.0 32 ............................. AGTGAATCTCTGTCTGACAGCAAACGTCGATA 220477 29 100.0 32 ............................. TGCACGCTTTTCGCGGGCGCGTTTGCGCCAAT 220538 29 100.0 32 ............................. TGTCCACGCGTTACCCCTGCGGCAGATCGTAG 220599 29 100.0 32 ............................. TACCCGGAGTTAACCAGGGCAATTAGAGAAGC 220660 29 100.0 32 ............................. TCAGAAATCGTACTCAATTTTCTGAACGTGCG 220721 29 100.0 32 ............................. TGTTTTTTGGTTTTTTTAGTTCCTTACTTTCG 220782 29 100.0 32 ............................. ACGAAACGGGAATAGTATTCGCTCATTGGTTG 220843 29 100.0 32 ............................. GGGTTAAATCGCCACCTCTGGGAAACGGCTCA 220904 29 100.0 32 ............................. AGATTCGCTTAACGCGCATCCGGCTTTTACGG 220965 29 100.0 32 ............................. CGCTGCGAGTAATCAAACTGGCCTAACTGGAT 221026 29 100.0 32 ............................. ACGAGTCATCTCGACCTGTGCCTGTTACTGCA 221087 29 100.0 32 ............................. CGGTCAATCTCGGCGATGTACGCCTCTTTAAA 221148 29 96.6 32 .............G............... GACTCAGACTATCTGATCATCTATCGCGGCGT 221209 28 75.9 0 ........T...TG.......-G..CT.. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCGGGAGAAATTGAACCGCCGCAGCCCGCGGCAGATATGCTGCCGCCCGCGATACCACAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCAAGCTTCGCGGGCGGCTCGCCATCTGGCTGCTGGAGTTGCGCGCCGGGGTTTACGTGGGGGACGTGTCGCGCCGGGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTGGACGGCCTGCGGCTAGTTTCGTTTTTACCCTTGGAAAATCAGTAGGTTAATAGTTCTTTAATAATATGAAATTGTAAACCAAACGTTGGTAGGATGTTGACTGCCAAAAAAGAGTAATAAATACAGTAGGGTAGTTTTAGA # Right flank : GGTATATCAATAATGTGGCTTATTGAATATGTGCAGGAGCATTATTTTATATGGCAATATATAAACATTAATTCTGAGTTGGCGCATAAAGATAACGGCAATGGTTAAAGAATTAAAATGTATTGCATTGCTTCTATTTCTGTTGATTATAATCAAATGATTTTTATTGGTGGTTTTTATGTTTGTTAACTTAGTTTCAATGTTAATTACAGTGTTTATTAAGTTCTACATGTAGAATTTATACGTTCTTCAGTTAATAGGAATGTATAAATGATATGGGATAAGTATGCAGCAATACGTCATGCACAGGATCGCGCCTACAGTAATAGCCATCATAAGTGCGAGTTATTTGTTAAAGAAGCTATTATTGCTGGTGGGGTTAATATACATCCAACACCTTCTGCAAAAAATATGGGTAAAACATTGATTCAAGCCGGTTTCTATGAGGTTTATGGTGAGCCCGTAACTGGTGATGTTGCTGTTATTAGCTCGATCCCCGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //