Array 1 388624-384883 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029287.2 Metallosphaera hakonensis JCM 8857 = DSM 7519 strain HO1-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 388623 30 100.0 38 .............................. AGGCACTGGCAACTAAAGACAGGATGCTCGCACGGGAG 388555 30 100.0 39 .............................. CGGTAGATTTTTGCTTCACAACTAAAAAGCGTGGATTCT 388486 30 100.0 39 .............................. CGTTCAGGAAAGAAACTATAAAAATAGTTTACGAACGAT 388417 30 100.0 40 .............................. TGTGGGGAACTTCCCGCTCATAATAGAGTCTCGGGTTCCC 388347 30 100.0 43 .............................. CCCACTCCGTCTATTCCATCTACTACAAGGATTTTCATAAAAA 388274 30 100.0 37 .............................. CCACCGGCACCCCACGTGCCGAGATTTCCTTGGACGT 388207 30 100.0 38 .............................. AAGGATCTTAAAACGTGCTATGGTGCTCAGGGGTTTAA 388139 30 100.0 36 .............................. AAGCAGTCACGAATGTCAGCGAGAAACTCTCTGGTA 388073 30 100.0 39 .............................. CGTGCTGATCGTAGGTCTCATATGTGATTGTGGCGTTCA 388004 30 100.0 39 .............................. ATGGTGCTGGCACCACCACCTTTACCACCATATCCTATG 387935 30 100.0 38 .............................. GAGAAGTTGAAGCAGTCAGGTGAGAAAGTAGATAAGGC 387867 30 100.0 37 .............................. ACAAATGCAATCAAATCATCAGGCATTTCGATATATT 387800 30 100.0 38 .............................. TCGCGAGAGAGTCTCCTATGTCTCTCGCGACATAGAAG 387732 30 100.0 37 .............................. CCGTACTATGATACGGTAAGGGAGGTGGTAGAGGAAG 387665 30 100.0 39 .............................. TAGCTATCACTGTACTATCCATTACCTTATTGTCACCTT 387596 30 100.0 35 .............................. CGGATATACGGCACGGAGGAGCGATGTAATATTCG 387531 30 100.0 36 .............................. TGTATTCTGAGCATGATAAACGGTTATTGGTGAAGA 387465 30 100.0 38 .............................. ATGTTTTCGATTGCTTCTTTTCAGGCGGGAGAGATTCA 387397 30 100.0 36 .............................. AAAAATTTCCTTGTTGAGCCGTAATATTTTGTGGAA 387331 30 100.0 36 .............................. TAAAATTTGAGAAACTGTATTACCACCTGTTAAATA 387265 30 100.0 38 .............................. ATCCCACCATTTGATGAATTTACATCATGGCAATGGAA 387197 30 100.0 39 .............................. AGAGAAATAGAAAGAAAAGAGAAGAAATAGAAAAAGGAG 387128 30 100.0 38 .............................. TTCTTTACAAAGACGTAGTTCTTCATCTGCTTTTGAAG 387060 30 100.0 36 .............................. AATAGTCCAGCATCTATAAGCGGTTTCAGACGTTGA 386994 30 100.0 38 .............................. GCGTGGGAATTCACACGGAGTAATTTAGGAAATACATA 386926 30 100.0 35 .............................. GTGAGCACAGATAGGGCAGCCAGGAGGATCCTCAG 386861 30 100.0 39 .............................. GGAATATTAAATTCTCGTATAAGATATTCTACTTGATTG 386792 30 100.0 36 .............................. CGAGTATAGCGTTCAACAGTAAACCCATGCTTACTT 386726 30 100.0 35 .............................. TCATTGCCTCTTCCAACGCTTTTCTATGTGGATCC 386661 30 100.0 41 .............................. ATGGGGAAGTGGATATATACCACTTTGAACCCCATGGAACT 386590 30 100.0 36 .............................. ATGAACTCCAGAACGATGATAGGTCTACAGGGTTAT 386524 30 100.0 37 .............................. GGAATAAGACCGATAACCGTCTTATTGAAATCTCTTA 386457 30 100.0 38 .............................. TCGCAGAACGGGAATGGGGGCAAGAGACGACACAGTGT 386389 30 100.0 37 .............................. CTCTCTCCACCTGACCCACGTATTTTCCTCTGTTTTC 386322 30 100.0 37 .............................. AGTTTGTCACGCAAGACTTACCGCTAGGAAAGAAAAT 386255 30 100.0 37 .............................. ATCCAGGTGAGGGACTTCCCTGTGTACAGCTGTTCCA 386188 30 100.0 38 .............................. GGGGAGAGGAGAAAGGGGTAGAAAGATTTAAATATCTC 386120 30 100.0 37 .............................. CCCACTCCGTCTACACCATCGACAACTAAGATTTTCA 386053 30 100.0 39 .............................. TACAAAGGATCTTAAAAGCTGAAAACCCTGAGGAATAGC 385984 30 100.0 37 .............................. TTCAAAGTATGAGGAAGTTGTTGATGCCGAGTTATCA 385917 30 100.0 38 .............................. GGAGAAACTAGCAATTTAGCTAATCCGGCAGAAAGAGA 385849 30 100.0 36 .............................. TAGTCCTTCAGCACCGATTTCCCGGCACTTATCAGA 385783 30 100.0 37 .............................. GAGATCCTCCCCTTCCCGAGGTCATTAGCATGCTTAA 385716 30 100.0 36 .............................. GGGAAGTAATAGCAGAAGTAGAAACGCCCAATATCG 385650 30 100.0 37 .............................. CGAAACAAAAGAAAATTGATTTTCTCAAGAGAGTGAG 385583 30 100.0 38 .............................. CCGCATAAGTTGTCTTCCCTGCTCCCTGAAACCCTGAG 385515 30 100.0 38 .............................. CATGCTCTCCTGTAAGCTTGTCTACAACAAGGTGTCCG 385447 30 96.7 36 ........A..................... TAGCTATCTACTACTCAAGGAAGGTCTCACAACTGA 385381 30 96.7 37 ........A..................... GCAGTTCAAAGGCCTGCTTCCTGGTGATGACCTTCAG 385314 30 100.0 36 .............................. GTCTAGAAACGTAGTGGTTCCGTTCTGGTCCACGAA 385248 30 100.0 39 .............................. AATCTGCCTAGCCCTCACAATAGAAACAGGCGACAACGA 385179 30 96.7 37 ............................G. CTCATACGGTTACCGACACGGTTTCGGTTCCTCCTGG 385112 30 100.0 37 .............................. TCGCCTGAGAAAGTAGAATACTCTCTACAGAGACAGG 385045 30 100.0 36 .............................. ACGATGACGTAGAGCTCGTAGTAGACATCCTGAAGA 384979 30 100.0 37 .............................. CTTGACTCATAATCTCCTCCTCTCCTTCTTCTCGGGT 384912 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 56 30 99.8 37 GTTTGTAGGGTTCCTTAGAGGGTTTGAAAC # Left flank : GGACGTGAAGATATACGAGGAGTTCGACGGGGAGTACGCGACCAATAGCAAGAGACGTAAGAAGGAAGAGCAGGTCAACTTCAGACTTCTGGTGTATGGTAAGGAAATCGTTAAGAAGAAGAGGAAGACCGTGGTGTACTTCGCGAGGGCGACCAACCTCAACCTAACCAAGAGGGAAGTGCTGAAGCTGTACAACAAGGTTAGGGGTCCCATTGAGACGTCTTACAGGAACATCAAGGCCTTCCTTCCCTTCACGAGCTCCACCAAGTTCGTCTTCCGCGAGTTGATCTTCGTGCTGGCCATGGTCTTCTACTCGCTTTACACCGTGTTCAAGGACGTCATGAGAAGGGAGGAGTTCAGGTTGCTGCTCATCCTCTGCTTTCTAGACGATCTATCGGATCTCAAGGATTTTATATTTACTCTTGAGAAAACACTTAATAACAAGATAGATTTATTTTTACGGAGGTGATTTTGGGGTCTACCGGTGAGGGCGGGGTAGT # Right flank : ATGAGGTGATTATAAATTGTAAAGACCTTTTGAGGGTCCAAGTTAGACTTTATGATAACATTCCCCATATCGTTTTTATTGTGGGGATTGTGAATGAATCAGTCTCTCGGTCAGTTATAACTAACCGCAGTGCCAGCCATTCATCATTCGGCCCGTCTCCATCTTACATTCTGCTAATGCAGACATCCCATAGGTCTCCTTTAAAGGTTTGAAATAGCTTATCCTAAACGGCGCCGACTTAATCCGTGCGTCGGTGAACCGAGACCCTCTCAATTAAGTTCTTATTACCCTGATGTAATCAAATATTTATGTATGCCATTTTAGTTTATGACATAGATGAGAGCAGAGTTTCCAAGGTCCTAAAGACCTGCAGAAAGTATCTAACGTGGATTCAGAGATCCGTCTTCGAAGGTGAGATTACTGAGGGGAACTTAGAACTACTCTCAGAAGAATTGAAAAGAATTATCAAGGATCAGGACAACGTCTTGATCTATCTAACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGGTTCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.00,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 389890-392543 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029287.2 Metallosphaera hakonensis JCM 8857 = DSM 7519 strain HO1-1 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 389890 30 100.0 38 .............................. TTTTCGAACGGGTAAGATAATCAATTCACGACTTCATA 389958 30 100.0 37 .............................. CATTATGAGCCTCTTCCTTTTTATGTATTTCTTTTTC 390025 30 100.0 37 .............................. ATACAATTACTAAACAGAAATAAACCGAAAACAGAAA 390092 30 100.0 35 .............................. ATGATGATAGGTTCAAAACTCAACATCATCATCAA 390157 30 100.0 37 .............................. CTAGGAATCGAAGTCACGGTCTTTATCACCGGACTAG 390224 30 100.0 38 .............................. ATGAGCCTCTTCCTTTTTTACGTATTCTTTGCGTCTTT 390292 30 100.0 37 .............................. TTCTCTACACAGTTGATGATGTGTGTACCGACCACCA 390359 30 100.0 37 .............................. AGAACGAAAACATTATCGATTTTACAATCAAGGGAAT 390426 30 100.0 37 .............................. TTCAAATAGATGAAAATGGACAACTTCAAGAGGTGCA 390493 30 100.0 38 .............................. TATCTCCTTGAATGCATTGAGCGTCAACATATTCAGTG 390561 30 100.0 33 .............................. CAATTTTGTCCGTCGGAAAGTTTTTCCATTCAA 390624 30 100.0 38 .............................. CGTAGCCGTCGCCCACTGGGGACACGGCCCACGTCACC 390692 30 100.0 39 .............................. TAACCAGGGAGAGGCGATAATTCCTATACCTAGTGCCAT 390761 30 100.0 38 .............................. TGAAGAGGATGATGAAGAATGAAGACTTCAACTTGGTG 390829 30 100.0 38 .............................. CAAATGAAGTACCGACACAAACTTTCCAGACGAGAGTT 390897 30 100.0 37 .............................. CAAAGTGGTGAGAGCGAAATGACGTATGAGGAATGGG 390964 30 100.0 38 .............................. CGTGGCAACTGGTTGCTTATTCCCCCCCACCCCGTTCA 391032 30 100.0 37 .............................. CCTGGCCCCGGTGGTCTGTTCCAGGCCACCGTGATAG 391099 30 100.0 35 .............................. TCTGTCGACGTTGGTTCATTGCCTAGGGAGGCGGT 391164 30 100.0 37 .............................. TGAAGAGCGAGGATCCTAGTGAGGCCCTTCCCCTCGT 391231 30 100.0 38 .............................. CGGATTGTAGAAAAAGACTCATATGTTATGAAGAAGAA 391299 30 100.0 37 .............................. TGTTGGCACTTGCAGAAACGCTTATCGCTTGAGAGAG 391366 30 100.0 36 .............................. TTTCCAACATCTTTTCAAATCCTTTCATGCATCGTT 391432 30 100.0 40 .............................. TTCTTCTGACATATTATTGAAATATTTATCGACTATCACG 391502 30 100.0 36 .............................. ATTACATAAACTACAAATATCAACATCTCTTTTTAT 391568 30 100.0 37 .............................. TACTCGGAGACAGTAGCGGAACGATTGAATTCTAGAT 391635 30 100.0 37 .............................. ACATAGAAGAGGAAGTTAAAAAACACGAACACTACGT 391702 30 100.0 36 .............................. TCAACATTCTACCTATATAGACTCCCACTATGACGG 391768 30 100.0 39 .............................. ACAAGGTAAAGGCACAACAATTCGATAATAACGAGAAGG 391837 30 100.0 38 .............................. GAGAAGAAATTGCAGATTTGCCCCTGATTTATGAAAAA 391905 30 100.0 37 .............................. TGTTGGAGACATTTTTTATGAGAATCGTCACTTTACG 391972 30 100.0 38 .............................. AGATGGTATCGTCTTTCCCACCATAACCAGTTCGCCTA 392040 30 100.0 35 .............................. TGTACAACTTGATGAGAACGAAAACATCATAGATT 392105 30 100.0 41 .............................. AAGTACCCATCACGGAGGTATTGAATCCCCCAAGTTCCCAG 392176 30 100.0 39 .............................. AGGCATAAGCAGAAACGTAACGAACAACAGACACAGGGA 392245 30 100.0 37 .............................. CTATTTCTGTCTACTTTCTATCGAGGTGAGAACATTA 392312 30 100.0 37 .............................. GGTATATTACCTTTTCGGTGTCAGCAAGGTTTATATA 392379 30 100.0 37 .............................. AGAACGACATGAGGGCCTTCGCCCTGAAGAGGCACCA 392446 30 100.0 38 .............................. CACAGAGCTGAAGTCCGACCAGGACAAACTGAACGCTA 392514 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 40 30 100.0 37 GTTTCAAACCCTCTAAGGAACCCTACAAAC # Left flank : CTTACCGTACCACGTCTTCGTGGTCCAATCTATGGAGACGTCGACCTCCTTCACTCCCTTGAGCATCTCCATGGAAATCCTCCTCATGGACTCCAGGAGCTTCTCCACAACCTCGTTTCCCTGCTCCTCCACGTAGTTCCTCACGGTCTGAGGTGACACGTTGTACCCGTTGGACCTGCCCTCCACGGAGTCCTTCCATAAGCACGCGGAGACCAGAACTCTCGCTACCTCCTCCGCCCTTCTCCCCTTGAAGGTTAACAGGGAAAGTAATTTATATCCTATTTGTTGTAGATTATTTTGGTGAGGAAGACCCGGTGTTACCACCTTAGGTTCACCACGTGATAATACCGGGTTCCTCGCCTTAAACCTTTCTTCAATTTGTTGCGCTCTTCACAAAGCAATAAATTCTATTACTTTTTACGAATCTGATACTACCCAACCAGAATTATTTTTCGTAAAATGATTTTGGGTCTACCGTCACGGACGGGGTCTCAGGTGAG # Right flank : CCCTGCTTATTTTCATGTATTTTCTCCCTAAAAAACCTTTCTCCGAATTCGGCAGTGAGACTCCACCATGAACTTCCCTTTCACTGCCGAGGCAAAATCAAGGGAAAGAAATATGGTTTTTTCTGGATATTTCCTTTCTCCCTATCACTGCCGAATTTTTGACTTCCTACAACAAGGTGAAAAAATTTATACTTAAAAAATAACAATATATCCCATGTCAATTAAGTTAAGAGAGGACGTAGTGGTAACTGGTACCTTGATCTGGTACCTTAAGATTTGCCCCAGGGAAGTTTGGTACATGGCGAGGCAGATCACACCCTATGAGGGTCATCCGAAACTGGAGAAGGGACGAGCGATTCATCAAATATACTCAGATCGAATTCAGATCTCTCTGGAGGGAATGAAGATTGACGGGTTTAGGAGAGAGGAAAGAACCGTGATTGAGATAAAATCGTCTTCAAGACATCTTGAATCTGCAAGGGCGCAGACAAACTACTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCCTCTAAGGAACCCTACAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.00,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 501011-512637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029287.2 Metallosphaera hakonensis JCM 8857 = DSM 7519 strain HO1-1 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 501011 30 100.0 37 .............................. TATTCGACCAGTATATACCCAACCTAGGGCAAGGATA 501078 30 100.0 38 .............................. ACCGAGTACCACATCTTGGCCTCGGAGATCTCCCTGAA 501146 30 100.0 38 .............................. TAAAACGAAAAGGAGTCGATTAACGTAAGGTTTCCGTA 501214 30 100.0 40 .............................. AGGACTAAGGAGAGGAGCGTGGAGGAAGTGGCCAAAGAGC 501284 30 100.0 36 .............................. CGTACATCTCTCAAAGGGTGAACGACTTGGCCTCCT 501350 30 100.0 39 .............................. TTGTGAAAAAAGAAATGGGAGACGAACGAATATATAGAG 501419 30 100.0 40 .............................. AAAACAGACTCGGAAGGTATGATGAGAAGACCATCAAAGT 501489 30 100.0 39 .............................. GGTCGAGAACAAAGAAATTAAGATGTTTCAATTGCTTCA 501558 30 100.0 37 .............................. AAGAGAGGATAATACGGGTGAATAAGGAGACGCAAAC 501625 30 100.0 37 .............................. GGCATAGAATAGTAGAAATTCACAGACGTGAAAACTG 501692 30 100.0 35 .............................. CAAAACGACGACGTCATAAAACTAAAGTAATACTC 501757 30 100.0 36 .............................. ATGCCAGGGTGGGCTAAATCAAGGCTTAGGGACGAG 501823 30 100.0 38 .............................. AAGATTTCGAAGTATGGTACATTAGGAGCTATAGGAGT 501891 30 100.0 36 .............................. TCTCACTGGTTTAGCCGTTTATCCGGAGTGGAAAGA 501957 30 100.0 36 .............................. CGTCGTGTGTAATCGTGATGAAATCACTTGCCCCGT 502023 30 100.0 37 .............................. GGAGTTTGTTGATTCTCTGCCATCGCACTCACCCCAA 502090 30 100.0 37 .............................. TTTCCACCACCATTGTTATTATTGTTTCCACCACCAT 502157 30 100.0 35 .............................. CCGTCATACAAAGGCGGAAGAGTTGAGGCGTTCAT 502222 30 100.0 36 .............................. AGAATTGAGTAGATTCGATTAGTTCGTCTATCTTCT 502288 30 100.0 38 .............................. TGGCTTACCAATTTCAATTATTCACCCATTTTTTTACT 502356 30 100.0 36 .............................. CTCTTCCATAAAAACAATTGGATAAGCAACCCTAAA 502422 30 100.0 36 .............................. CAGGACAACCCGTGCTGACAGAAGAAGACCCAATCT 502488 30 100.0 36 .............................. TTAAAAAGAGTAAAAGTGAGCAGTATGAAAGTACTG 502554 30 100.0 38 .............................. GATAAATCACTTCTTCAGTAAGAGAACGGTAAAAGAGC 502622 30 100.0 37 .............................. TTACATCTAATTTTCCATATGCTGAGTCGAATTCATA 502689 30 100.0 39 .............................. TGAACTCCCGTCCTATGCCTTTTCCTTGGTAATTCTTAT 502758 30 100.0 38 .............................. TTGTATCAACAATCACAGGGAGAGGAGCGAAGTTATCA 502826 30 100.0 38 .............................. TTTCCGGTCACGTTCAGATAGACCGAACTGTTGTAGAT 502894 30 100.0 36 .............................. GCCTTCTTCGCCTCCATTCTCAACTTCTTGCTCTGT 502960 30 100.0 36 .............................. TGTAAGCGGATATTCAGCAAATATTGGTTGGGTTTA 503026 30 100.0 36 .............................. CTGAGAGCAATAGAGATAGCACTGAAGATTCATAAT 503092 30 100.0 37 .............................. AAGACGAAAAGCAGAGAGATCAGGTACTTTCGGACTT 503159 30 100.0 36 .............................. CTACACCCACTGCCACGATAATGAGGAACAGGACGA 503225 30 100.0 39 .............................. GGGAGAAATGGGAACAGATAGCGAAACAACATGAAGAAG 503294 30 100.0 37 .............................. GGGAGAAAGTAAAGGAGATAAAATTAGGGAGTTCCTC 503361 30 100.0 36 .............................. CGGTTTCAACTGTCTGAACAATCCTGTGCCTTTGGA 503427 30 100.0 36 .............................. CAGTACCGCTGATGTTGGTTGGTGCTGGGGCAAGAA 503493 30 100.0 37 .............................. ATGTAAAAACCGTCAATAAACAATCTTCCTAAACTCT 503560 30 100.0 37 .............................. ATGGCGAGGTTGAAGGTATAGTAATAGGAACGGGGTT 503627 30 100.0 37 .............................. CGTCGTGAAATAGTCTTCTATTCCTTTTCCCACGTAC 503694 30 100.0 36 .............................. TCAACGCACTGGGTCAAGGCTTCAATGACGTCAAGG 503760 30 100.0 37 .............................. TTCGTATACATCAAAGTGACGGGAGACCACGAAGAAC 503827 30 100.0 38 .............................. AAACAGTTTTGTATACTTTCATGAAGATTTTTTGAAAT 503895 30 100.0 38 .............................. CACTGAATATGTTGACGCTCAATGCGTTCAGGGAGATA 503963 30 100.0 38 .............................. TCCTCCAGATAAAGTAGTATTTGATGAGCAAAGAGCGG 504031 30 100.0 36 .............................. GACAAGGAGCCTCGAAAGACTCTTCGCTGGTATGGG 504097 30 100.0 37 .............................. AAGAGGTTGATCAAGTAATGTCAATCTTTAGCAGTCC 504164 30 100.0 36 .............................. TATTTGAAAGCACATGCTCCAAAACTCCCGCTTCCT 504230 30 100.0 38 .............................. TCGCACCGAAACTTCCCATAAGACCTCTCGCAGCTCCG 504298 30 100.0 35 .............................. AAAGTTTCCTATATGTCTTAGACAGACTCGGTTGC 504363 30 100.0 40 .............................. ACAAAATGTAGTATTTAGGATCATTATCGCGAGAGCAAGG 504433 30 100.0 39 .............................. CTTTCTGAATCCATCTAGCCATGTACCCACCTCATTAGC 504502 30 100.0 34 .............................. AAATACGGCGTAATCAAGACCTTCACTGTGACCA 504566 30 100.0 38 .............................. ACTCTGACTTTGAACTCATCTGGAGTTCAAGGTAAAGT 504634 30 100.0 35 .............................. TGAGTTCAATGGCTCTGTAGGCTACAGGATAAGTA 504699 30 100.0 39 .............................. TTGACCCAATGAGCAATTACAACAGGTTTTTCGAAAAGG 504768 30 100.0 37 .............................. CTAAGCCCAGAAGACAGAGATATGAAAATGAAGGAAT 504835 30 100.0 38 .............................. CAAACTAGAATAAAGAATTGGGAAACAATTTATGAGTT 504903 30 100.0 36 .............................. CTAAACTCCATGCCTCTGATAACGCGTTTTTCAATT 504969 30 100.0 36 .............................. CGGTCTATTTATCTAGAATGTCGAAAGAAGGGATAA 505035 30 100.0 38 .............................. AGGAACTCCGCCTTCACCATGTCCTCCACCGCCTTCCG 505103 30 100.0 36 .............................. TAGCCCTGGATAACGATCACATATTCGGTGCTATTC 505169 30 100.0 38 .............................. ATGGAGGTGGACACGCTGGACGACCCGTCGGTCCTAAA 505237 30 100.0 36 .............................. TACTCACCTAACACTTTCATGGTCAAATCTCGGTGA 505303 30 100.0 36 .............................. ACAATCGAAGTAATTGGTTCTCAGTTGCCTATAATT 505369 30 100.0 37 .............................. ATCTTCACCGTATAGCCGTTCTCGTAATGTATTTCAA 505436 30 100.0 37 .............................. GAAGTCATTGGAGACGGTCTAAGAAAGGAATTAATGG 505503 30 100.0 37 .............................. TGTCCCTTCCCTAGCCATAGTCGTTAAGTGTAATTCA 505570 30 100.0 37 .............................. CGTGGGCCAGGGGTACAACTTCTTCGTGGGCCTTATA 505637 30 100.0 35 .............................. TAGACCAGTCTCAGCCAATTTGGAAAGGTATACTT 505702 30 100.0 37 .............................. TAGATAGGGCAGGGTATCTTCCCCCATGGAAGGACAA 505769 30 100.0 35 .............................. GATGGATTTTTGTAAGAGTTTATTATTGCTGCAAG 505834 30 100.0 38 .............................. GTAATTTAGGAGGACCTGCGTGGTCACAGTGAAGGTCT 505902 30 100.0 36 .............................. AGGAGCTTCAGACAAATGACTAGAAAATCTGATAAT 505968 30 100.0 38 .............................. CGGTAAACGGTAGACAAAATCCACACTGGGCCATAACA 506036 30 100.0 37 .............................. CTTTCAACACCGTTTAAAATACTATTGAAAATATATA 506103 30 100.0 37 .............................. GAGGGCTGGAGTAAGGTTTACGACGGGTCTGAGGACC 506170 30 100.0 37 .............................. AGGAAGAACTTTTGACGAAGCTGGACCTCTACTGTAT 506237 30 100.0 38 .............................. AGCTCGAAGAATTGCTCAAACAACAAAGCGAAGAAGTA 506305 30 100.0 39 .............................. TTCTAATTTCATTCTTTGCTTTTATTTCATTATTTTCTT 506374 30 100.0 38 .............................. TTCGCATTGGAAGAGCTGGAAGAGAAACGAACCGTGGC 506442 30 100.0 38 .............................. TTCTCTAACCTTAGAACAGATAGACCTGGATAACGGAA 506510 30 100.0 36 .............................. TAGCACTCGCATTCCCTGGAGCCACTGGTGTTATTG 506576 30 100.0 37 .............................. TCCCACTGTGCGTATTGTATAGCGTTGTAAATATCAG 506643 30 100.0 35 .............................. ATGGTGCAGCATCCTCGCTTTGCTATGTAGATCTT 506708 30 100.0 38 .............................. GTATCAGAAGGTGGATCAGAATTCATTTGATTAATTAA 506776 30 100.0 37 .............................. ATCTCCTGCACTGACAATACTTTGCCCTCCTCGAGTC 506843 30 100.0 37 .............................. TTGACAGTAGCGTTGGATTTGGAAAACAGAGGAGATG 506910 30 100.0 37 .............................. AAAATGTAAACAGTACTAGGAATTTTAGGGAATAGAA 506977 30 100.0 37 .............................. TGTTAATAGGGTCTGGAAAGAATGGCAAATCAACATT 507044 30 100.0 39 .............................. AATACGTAAGGAAGTTCGTCGCCTCTAAAATGGCAGAGT 507113 30 100.0 37 .............................. CTCTGATGTTAATCCACAGTCACCCTCTCCTGGACCA 507180 30 100.0 35 .............................. CACTCCTCCTCGCTCATCCACTGACACGGCATCTT 507245 30 100.0 38 .............................. GACTTCGTGATGAGTAACTTCCAATTGGACGTACTGTA 507313 30 100.0 37 .............................. GACTTTTCCCCGGTTCCCCCGGTTAGCGAGTAAAATT 507380 30 100.0 37 .............................. AAGACTAGCGAAGCTTCACTGGTGTCACGGGTGGGCG 507447 30 100.0 36 .............................. AAGAACCGGAACGTGATGTATGCGACCTGGGGGACA 507513 30 100.0 36 .............................. AGGGCCTGAGAAGTCTGGAAGGGGACGTGACATATG 507579 30 100.0 40 .............................. TCCTTAGATATATTGAAACTGATTTTAGTCATCTTCGATT 507649 30 100.0 40 .............................. TCCCCCTCACGGAAGAAGCTACCATAGTGAGGTTCGGCGA 507719 30 100.0 38 .............................. TATCAAGGAGCTAGCACGTACTGGAACGTCTCTGTGAC 507787 30 100.0 35 .............................. CCTTTACGCCTTCCGTTATTTTTTCCACTTTTCTA 507852 30 100.0 37 .............................. AGGGAGACTCAGGCGAAAGTGATGAGTATCCTTTCGT 507919 30 100.0 36 .............................. TGGATTCCGCAATACGGAATATGGAAAACTAATTTA 507985 30 100.0 37 .............................. CCTAGATTAGACCTCGTTACCTGCCACAGTAGATACT 508052 30 100.0 37 .............................. GTCTTCTCCGTGTGTGTGGACGCCCTCGGGCTGAAAC 508119 30 100.0 35 .............................. TAAAAGAGGACTTCTGGTTAAGTGGATATGCAAAA 508184 30 100.0 35 .............................. CTGGATCAATCTTTCTGCCAATTAACTGATATGTC 508249 30 100.0 37 .............................. GAATAGAAGTCCCTCTCTGTGGCTAACCTCACCTCGG 508316 30 100.0 38 .............................. TCGAGAACTGGCGTATAGATTGGGTCAGACTTTCAATG 508384 30 100.0 36 .............................. GCTGAAAGTACCTTCGTTTCAGTTCCTCGAAATTGT 508450 30 100.0 36 .............................. CATCGCTTGGTTCCTCTTCAACGTCCTCCACATTAG 508516 30 100.0 37 .............................. GAGGAGATTCGCCTTGGCCCACTTCCGCTACGACGAT 508583 30 100.0 37 .............................. TTCTCAATACTCTCAAACGGTCTGATACTAATACCGT 508650 30 100.0 37 .............................. TAGCACTCGCATTCCCTGGAGCCACTGGTGTTATTGT 508717 30 100.0 38 .............................. AGATAAACTAACTATCTTTAATTTCGCACTAAAAAAGA 508785 30 100.0 38 .............................. AGAATCAGTGATAATCCTTGTAGATGGTTTAGGAAAAT 508853 30 100.0 39 .............................. AAGAACCGGAACGTGATGTATGCGACCTGGAGGACACAC 508922 30 100.0 36 .............................. TCAATAAGGGCAGGTATCTCTACTTGGTCATCCCAT 508988 30 100.0 37 .............................. AGGAACTGGAACAGAGATGGATGTCGGAGGTAGCGTA 509055 30 100.0 38 .............................. CGACAATGAGATAAAATATAATGTGCTAGATGGGACGT 509123 30 100.0 35 .............................. CCTCCAGGTACTTTCGGGTCTGTAACTGCTTACTT 509188 30 100.0 38 .............................. GCAACGCTAGGTATAGGGTGGTGGTTAGGAAGTACATT 509256 30 100.0 37 .............................. ATCTTGTAAAATTAACACTTAGAAATATCGAAGAAAA 509323 30 100.0 38 .............................. ATATATATTCATGAGGATTATAGCCAAATTGTGAAACA 509391 30 100.0 37 .............................. AGTCCATAGGCTCTAAGCACACGTCTTCGTTGTAAAT 509458 30 100.0 38 .............................. CCTCTTTTACAGTTATTTCAGCCTTACCACTTTTCGGG 509526 30 100.0 37 .............................. CCATACTGGAGCACTTTCTTTCCTTTAGTTTTCTCTA 509593 30 100.0 36 .............................. AATATAAGGTATTATATCCAAACGTGACGATAGCTT 509659 30 100.0 36 .............................. TCCATAATGCTTGCATTCCTCCGATTAATTTTGATG 509725 30 100.0 39 .............................. CTTTATGCGGAAGACGCATATCAGTCTATATACAGCCAG 509794 30 100.0 36 .............................. AATAAGTGAATAGAAGTAATTATCAGTTTGTGGCAC 509860 30 100.0 36 .............................. CTGTCGGTAGTAGTGCTCCTCTGCCGGGCGCGGCGG 509926 30 100.0 36 .............................. TACACTTCAAGCAATTGGTGTGAATACATATCCTTA 509992 30 100.0 38 .............................. TTTCAAATTAAATTCCATAGATGAAATCTATAGGTGTG 510060 30 100.0 38 .............................. AGTTTTCCCAACTCGCTTTCATCGGTCAGTCCCACTTT 510128 30 100.0 38 .............................. ATGGAGATGAAAGTAGATGAAAAGAAAGTACAAAACTC 510196 30 100.0 38 .............................. TCATTCAAAATCAACATATTCAACAAATCCTGGACCCT 510264 30 100.0 36 .............................. AATCAAGAGTTTGAGCGTTTTGATTACCGATAAGGA 510330 30 100.0 38 .............................. ATGCTGGGACGGAGATGAACGCGAGCATCCGCTCTAGT 510398 30 100.0 38 .............................. TCCGCCTCCTCCACCTGTTGCTACTGATTCCTCGACGG 510466 30 100.0 36 .............................. GAAAAAGTTAAGTCTCATAGACTGCTAGAGTGGAGA 510532 30 100.0 37 .............................. CGGACAAGTATATCCTTAATATAAATGTTACATATTA 510599 30 100.0 38 .............................. ACACATATCACCGACCACATTTCGTAGGATTGCTAATT 510667 30 100.0 38 .............................. ACCTTCGCACCCTCAGATACTATGGCGTGGAAAATAGC 510735 30 100.0 38 .............................. TCAAAAAGATGATAATTCATTTGCAAAAATATGGGAAG 510803 30 100.0 36 .............................. CTGACTCTCTGAGAAGGCACAAACTAGCACTAGGGC 510869 30 100.0 37 .............................. ACTGGAAAACTAAAACTGGAAGAGGATGTGAATAAAA 510936 30 100.0 37 .............................. GACGGTATATCAGCAAGTGTCCTTATTTGAGACTTCC 511003 30 100.0 37 .............................. TAACTCCCACATTATATATCTTCCGGGGAACAGGAGA 511070 30 100.0 39 .............................. TACATCTAGCTTTTCGGTCATCGTACGAAATACCTCCCT 511139 30 100.0 38 .............................. TACCGTGCTTAGCCTTACCCTTCTTCCTTTATCTCCAA 511207 30 100.0 37 .............................. GCAATCAATGGGTTCGAGAAACTGTAAGAGTATGCCG 511274 30 100.0 37 .............................. GACGTAAATGATGAGATATTCGAAAAGGAAGTCGAAG 511341 30 100.0 37 .............................. TAGCCCAATAGTGTCCGTCCACATTCCGGACAGGTGT 511408 30 100.0 35 .............................. ATGTAATGTGGGAATTCGATCTTGCTAGATTCCCC 511473 30 100.0 36 .............................. GACATGGGGGATGAAGAATGATAGAGAAGAAAAAGG 511539 30 100.0 36 .............................. ATAGAAAGAACTCCTTTCTATGAATATGCAATACAA 511605 30 100.0 37 .............................. ATCCCAATCTTCAACTCTACTACTAATGATACGATAA 511672 30 100.0 36 .............................. AAGAAAGATTTCGACGAGTTCGGTGCTGAGCCGTTG 511738 30 100.0 38 .............................. CTGCAGAAATACATACTCATAGTAAGGAGATCTACCCC 511806 30 100.0 37 .............................. GTGAGACTGACTTACAATATCGACGTGTCGAAGATAG 511873 30 100.0 37 .............................. TTTTACAATAAACTTCCCGGTTTGCTCGGAAGAAATT 511940 30 100.0 36 .............................. ATTTCCTGCAAACACTAGGGCTAAACAACAGTGAAG 512006 30 100.0 36 .............................. ACATGATCGAATTCAGGTCTCCGAGGGTCATAAACG 512072 30 100.0 38 .............................. CCACCGATTGTGAGAGTATAACCAGAGGCTATCTCCAG 512140 30 100.0 39 .............................. CCGACGTATCCAGAGTGGAAAGAGAAAATCACGAAGTGG 512209 30 100.0 39 .............................. TCGGGTAACTCATCTAAACTCCGCACCTGTGCCTTTCCA 512278 30 100.0 37 .............................. TACTGCAGCTTCAACTTATTCCCTACCTTTTCCGTAG 512345 30 100.0 39 .............................. CCGACGTATCCAGAGTGGAAAGAGAAAATCACGAAGTGG 512414 30 100.0 35 .............................. CTTTCGACGATACTTCTACCGAGGCATTCTGGGGA 512479 30 100.0 35 .............................. ACGAGATCGTTGCAGTTGATTATTTCGGAAGAGAG 512544 30 100.0 34 .............................. TACTTCTCATACACCTCATTCCTAACCCTGATAG 512608 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 174 30 100.0 37 GTTTGTAGGGTTCCTTAGAGGGTTTGAAAC # Left flank : CGGTTTGTTTAATAAGGCGTCATCGGGTAATATCTTGGGGACGAGTGTGAGGGATATCTTCCCAGGTCCCTCTACGAGCTCCATAATCCGGACCCCGTAGAGGGTTACCTGGTTCACAGTTGACAGTTCCATGATATTACCTCATGCTCGTCCCCTATTAGTGTTACTCAAAATGTAGAATCAATTTCTACTATCTAATTCTATAGAAATAAATTGAAATCGCAATGGACTCCTGAGCCGCCCCATTTTTCAGATGAAATAAGAGACTTAAATAGTCCAAGATTTTAAATGATATGTGTTATTTTTTAAGTATAAATTTTTTCACCTTGTTGTAGGAAGTCAAAAATTCGGCAGTGATAGGGAGAAAGGAAATATCCAGAAAAAACCATATTTCTTTCCCTTGATTTTGCCTCGGCAGTGAAAGGGAAGTTCATGGTGGAGTCTCACTGCCGAATTCGGAGAAAGGTTTTTTAGGGAGAAAATACATGAAAATAAGCAGG # Right flank : CCAGCTGAAGTTAAATCTTCTCCAAGACTCCTCAGGTGAGTACGAAAATTCCTATTATACTCAGCGTAAACAATATCCCATGAAATTATCAAAAGACCTAGAGGTCCTACCTGGAAGCCCTAACACTCTAGTTTACCAGGGAAGGGTTGTAGTGGATTTGGGAGGAAAAAACGCCTCACTGAACCTTGAAGCAGAGGTTCAGCTGGCCACCCACGGGCACATGGATCATATTGCCGGTCTATTACGAGAAAGCAAGGTGAGATACCTACCCAGGGAGGACATGTGGGCGTTGAGTCTTCTGGGAAGGAGAGTCATGACCTATGGTTTCAGTTCCAAGGACTCTCCGCTCTTCACTTACGATCTTCTCAAGGAAGAGATTTCCCTTTCCGGGGACCCTGAGGTTGAGATAGTGAAGTTACCGGGACATACCCCAGGCCACAGCGGTTACATCGTTGGGAACGTGCTTTACGCCGGTGATGCGTTCTTTGGAAACAGGGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGGTTCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 2508180-2504509 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029287.2 Metallosphaera hakonensis JCM 8857 = DSM 7519 strain HO1-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 2508179 25 100.0 39 ......................... CCTTTCTCTTCCCTTTGACCCATCTGTCAGCGTAAGGAC 2508115 25 100.0 38 ......................... TAATATAAAAAAGAAACTTTAACTTGCCCATCTCCTTT 2508052 25 100.0 36 ......................... TGTATATGCCCGAGAGCGGTCACTTCGAGATTGCAG 2507991 25 100.0 38 ......................... CTTTCTCTCCGGGAGCGGGCATGACGTTTCCGTACACT 2507928 25 100.0 38 ......................... CTCAAATGCGCGCTCGGCACAAACAAAGAGCAAATTAT 2507865 25 100.0 38 ......................... CCATCTACATTAGCTTCCCACCGGTAAATACGGTGGGA 2507802 25 100.0 41 ......................... TATTATGATACGTGTTATGTTCTTTATCTTCACTCGTTCAT 2507736 25 100.0 38 ......................... CAGAAAAATGCCTCCCCGTACGACTACTCTCGTTTTCT 2507673 25 100.0 38 ......................... TCCAGGACGGCCCCCGCAAGCTTGGGGTCGGCAATGCC 2507610 25 100.0 39 ......................... ATTAAATACGCATGGTCACGAGGTGCAGTAAAGATCATT 2507546 25 100.0 41 ......................... GTCGCCACGTGACGCTAGAAAGGTTGCGAAAATTGTCGAGT 2507480 25 100.0 38 ......................... TCCATAAGATTTAAAAACCTCTGATCTAAGTTATTTTT 2507417 25 100.0 39 ......................... TCAATTTCATCGTTAGCGTTCTTGAGAAAGGTTACATCG 2507353 25 100.0 39 ......................... ACCCTGATAGAAGTCCACCACTTCGGAGGGTATACCCAG 2507289 25 100.0 37 ......................... TACGTGTTCGCCACCACCCTTGCCACCACCCTCGCCG 2507227 25 100.0 40 ......................... ATGAGCTCGCCTTTACTAGTAACCTTCATTTTGTACCCCC 2507162 25 100.0 36 ......................... CTAGCACTGATTATGTTGAGATTGTAAAGCATCTTT 2507101 25 100.0 39 ......................... ACCTGAATATAGCGATCCAAGGGTTCTACGGCTCAGGTA 2507037 25 100.0 38 ......................... TCTATTGTTTCAAACCACTCCTCGCCATCGTATAATGG 2506974 25 100.0 40 ......................... GCTAGGTAAGGGCCAACCTAGCGGGGAGGCTACTAGGCCC 2506909 25 100.0 40 ......................... GTATTCCCATTTTTTTGTGTATAGGAGTATCATATCATGA 2506844 25 100.0 38 ......................... GAGATAATCTCTCCGTCATACACTGAGCCTCAACCAAC 2506781 25 100.0 39 ......................... TCATCAACCCCAACATAATAATTTCCGCAATTGAATAAG 2506717 25 100.0 41 ......................... AATATTATATCCACTACCAGGGCATGCGTTTTCCCCACGTG 2506651 25 100.0 36 ......................... ATAATAACTTCCGCACGGGGCATCAGATAGTCGGGG 2506590 25 100.0 41 ......................... TTTACAAAATGACGGATATTTACGCCAGGTTGACGTCATTC 2506524 25 100.0 44 ......................... CTATGTATATGATCTTTGCTTTATCCTTGTTTAGTAATTTCATG 2506455 25 100.0 39 ......................... CGTTGAGATAGAACGGGTGTACTATTTCTTTTGTCCATG 2506391 25 100.0 41 ......................... GATTCATTCTTTCACCCTAGCTATCTTTATCTCATATTGAT 2506325 25 100.0 39 ......................... GCTTTTTAGATCATAAGTCTCTGACCTGAACCCAGCGAG 2506261 25 100.0 43 ......................... ATATTGCTATATAGCATTTCTGCGTCTTGCGGATCCTTATAGA 2506193 25 100.0 38 ......................... AATTCCTGTGTCATATTATTAGGGGGTATATGCCCCCT 2506130 25 100.0 40 ......................... TACAACGTTTTAGTTTGGGTAGAAAGCAGACAGAAATAAC 2506065 25 100.0 38 ......................... CTTAAGCAGCTCCCTGTTCATTCTTCTCACCCCCTTCC 2506002 25 100.0 40 ......................... CTATTCTTCATTATTATTTCTCTAATGTTGTTGGGTAAAT 2505937 25 100.0 38 ......................... GAGATAAACTACACACATCTCTCCATTTTTCCACAATT 2505874 25 100.0 38 ......................... CAGCCCAGGTCCTCGAGGGTCTTCTTCAGACCCTCAAC 2505811 25 100.0 37 ......................... CTTACAACGACAACGCTGTATTGCATTATTTCCTTAA 2505749 25 100.0 41 ......................... GTCACCATACTCACCATATCTGGCATTTGGGTATGATAAGA 2505683 25 100.0 36 ......................... GAATCCAGTTTTCACATATCATGTAATTATGATTAA 2505622 25 100.0 38 ......................... GTAGCATTCAAATATTCTTTCTTTCTGACTTGTTTCAG 2505559 25 100.0 36 ......................... ACCTCTGCATACTCTAGGAATACCGGCAAAGGTAGG 2505498 25 100.0 43 ......................... AGTTTGATGCATCTCATTCTTCATCGTCCTCTTCGGATTCCTC 2505430 25 100.0 38 ......................... CTGCCTCGTCCTCTGTTTCATAACCACAGAATTTACAT 2505367 25 100.0 38 ......................... CACCCGTCCTTTAGGTGGTACTTATTTATCTGTAGTAC 2505304 25 100.0 39 ......................... TGTTCCCTTTATGGATCGATATTCTGCTAATCGTCTTGT 2505240 25 100.0 37 ......................... ATAGCATATTTTAGATGTAGAGATGAAATATATGCAT 2505178 25 100.0 40 ......................... ATTGACTTCCAATCCATTTTCCTCCTAATTTCTTAATTGT 2505113 25 100.0 40 ......................... AGTAAGGCACCCGTGACACTATACCCCATTCCCCAGAAGG 2505048 25 100.0 43 ......................... TGTCAAAATACAAGATGATTTTCCTCTTTAGTAAGAAAAGTAT 2504980 25 100.0 38 ......................... GTTATCAAATACGTATACCACAGATTTTGGTTTTTCCA 2504917 25 100.0 36 ......................... ACCTCTGCATACTCTAGGAATACCGGCAAAGGTAGG 2504856 25 100.0 40 ......................... CTATGGTTCTGTTGTACATTGTTGTAGGAGAGGAGACATA 2504791 25 100.0 38 ......................... TATTACATATCGCTAGAATGAAAGTTGAAAAAAATTTA 2504728 25 100.0 40 ......................... TTTTCACATATAAGATCTGCGAAACCTGATACCTTAACCC 2504663 25 100.0 42 ......................... GTTTTTGCGTCAGTCCCTTTCATCTGTTGATTGTTGTTCTGA 2504596 25 100.0 36 ......................... GTCTAATTTGGTTTAGTACTTCTCTCAATATGACGG 2504535 25 84.0 0 A.......T............G.G. | A,G [2504514,2504524] ========== ====== ====== ====== ========================= ============================================ ================== 58 25 99.7 39 GTTGCATCCCAAAAGGAATTGAAAG # Left flank : AAAGGTGGGTCACCAAGAATGGACGTTGATGAACCGAGAGATGTAGTTATACCCTGGTTGACCGAAATGCGCTATAAATTTTTTATTTAATTCCTGGAGTTGAAGTTAGGGCTAAGACGTTGCTTAAAAAGGTATTTAAAAATATTATTACTCCTCAATTCTAAAGATAGTTATTTTCTGTTGTAGTCTTCTATTAATTTTTTAACGTCATCATCCGAAATTAAAAATAATCACTAAGAAAGACATAACCATAAAGTTCTAACTTTACCTATGGTTTAAAAATGATAAAGTACGAGTCTCAATGCGACCATTGCGAAATCCGCCAGATTAATTGAACGTATATAAATATAGCTTGAGTTTCAATTTAACAAGAAGACCATGCGACCGAAAAAGGATCGGGAAATTACTAGGAAAAATGGTCGCAAGGATTTGGAAGGAAAGGTAGAGAAAGTTTATTAGGGGGAGACGGTGATATAACATATAAGAAAATAAATACAACT # Right flank : TGCGAAGAGGAGCTCACCGGTAGTTTGATCCTGTCTTTTATCGAATAGGAATGAGTCCTTCCCCCGTTAAGGAATTTACCTAGTCGTCTCTGTTGAGGTAATTAAAACAGCTTAGCCCAACATCATGGGAGATGTAGATCCCTGAATCATCTAGCGTTAGCTCATAATTGAATTTATCCATAACTACGTTGCTCTCTCCATGGCCAGAACATTCCTTATGGCTCAACGGCAAGGGTGATTCACGTCTTCATTTGGAATTCAGTTTATTCAAAGAAATAGAATGAATTTAATTGAATGCTCCTCGCATTTAAGGCAGGGATTCATGTTTTACATTACCCTTATTTGATCTACCTTAGTCATAATTACAATTCGCAATTGACACCTGAGTCGCTCCAATGGAGAGAAGCCTTTTCATAATTCGTAAACTCTGGGACCGAGATCGGTTAATGCTAGATCATTTTAGTATGGGGAGTTAGTGTAGACCCTGTTTTCCCAAGGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCCAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2530048-2533301 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029287.2 Metallosphaera hakonensis JCM 8857 = DSM 7519 strain HO1-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 2530048 26 100.0 39 .......................... TTCTTGCATGTTTCTCGAGAAGGTTTAAGTAATTCAGCC 2530113 26 100.0 38 .......................... GTCACGTCGCCGACAGTACGTGCTATGTTCTGCCCTCC 2530177 26 100.0 36 .......................... AACGCTTGGGGTTTGTGCCATTTTTCTTCACTATAA 2530239 26 100.0 37 .......................... TCAACATCAACGATGACGGGGCTAGTCTAGGGGGCTA 2530302 26 100.0 37 .......................... TGTGTCATCAAACTTCTTCAGCATCGCTAGAGCGAGG 2530365 26 100.0 39 .......................... TTATGAATATTACTGAAATGCCATAACTTCCCGAACCCT 2530430 26 100.0 37 .......................... ATAGTATACCTGGAAGAGAACCTCATCAAGCAATTGT 2530493 26 100.0 38 .......................... TCAAATACGCAGAGGCTATGATGCAGAAGGCATCTGGA 2530557 26 100.0 38 .......................... CGTACTATTGCTACTACCTCATCTCTGTTTTTTTCTAT 2530621 26 100.0 38 .......................... CTTTTCTTCTGTGTCTGTAAGTTTCATTTTCTCACCGT 2530685 26 100.0 37 .......................... GATTATCGATTTAATTTGCTTATTAAATGGTTTATAA 2530748 26 100.0 38 .......................... CAACTGCGACTTGGATACGGAAGAAACAGCATACCCGT 2530812 26 100.0 36 .......................... TTATATAAATTTACATTTTCAATAATAAGTTGTTGA 2530874 26 100.0 38 .......................... ATAACGATAAAAATGAACCTGTTGATGCTTACATTCAC 2530938 26 100.0 38 .......................... GATGTACAAGAACGTTGTACGACCTCATCAATCTCTTC 2531002 26 100.0 38 .......................... TTGTTGAACTTCTTTTTGCATTTTTAACCCCGGAAAAA 2531066 26 100.0 42 .......................... GATTCAAAATGGATCCTGAGGAGGTAGAACTTCTCGATGCGT 2531134 26 100.0 38 .......................... TTATCTACGCTCAGAGCCCAAAGATAGGTCACCAACGA 2531198 26 100.0 38 .......................... CAATAATGGGCTTTACAACTTCATCGAGCTCCACGAAG 2531262 26 100.0 41 .......................... TAGGCCTGGGTCTGGTCGGTGCTGTCATCGTAGTGGCCTAC 2531329 26 100.0 39 .......................... CCACCTTTGCCTTTCCCACCTTCTCATTTCTCATCTCAC 2531394 26 100.0 39 .......................... CATTTCTCATCTCATCAAGAAGAGGCTGTATCGCCATAC 2531459 26 100.0 39 .......................... ATTGACTACGTAGCAATTTTCCCGGTACAAACGAAGCCG 2531524 26 100.0 37 .......................... TACTCCTTTTGCATTTTTTGACACTCCTCATATAAAA 2531587 26 100.0 39 .......................... AAGAAGGCGACCCTCCCGAACCTCCTGAACCTCCGGCAC 2531652 26 100.0 40 .......................... TGCAAAAACGTCGTTTTCGTCCCAATGTCCGTTGTTACTT 2531718 26 100.0 38 .......................... TCCGGGAGGAGCGGTGACAATAAAAGGTCTTCGATAAA 2531782 26 100.0 38 .......................... CTTTATTCCTGTCTGTAGCAGACTATCGATCTTGTTGT 2531846 26 100.0 39 .......................... ATCTTTTCCTGCAGACATTTCTATCTTTAACAGTTCAGG 2531911 26 100.0 40 .......................... ACCTTTGACCTAATAATAATGTGTAACATAACATCTTTAA 2531977 26 100.0 39 .......................... TTCAAACAATACTGCACACTGTTAAGATTGTTATATAGT 2532042 26 100.0 39 .......................... GTATTAACTTAATACCGATTATGGTTCAATACACAGTTA 2532107 26 100.0 37 .......................... GAAGAACTCCACTGGCCTGAAGAACTCCAGAAGAACT 2532170 26 100.0 38 .......................... GCTGTTAGTATTAAGCGATTGGTGGGTTTCTCCCCGGC 2532234 26 100.0 39 .......................... TGTATTATTTCTGCATTTCCCACCGTTGCAGATGCTGAA 2532299 26 100.0 43 .......................... ATATTGAACTTCGCGTACTTCCTAAACTTCTTCGCGTCCTTGT 2532368 26 100.0 39 .......................... ATTGCCATCGTTCCACTACTTTCAGTGTAGCAATACTTT 2532433 26 100.0 41 .......................... GGGACTTCACTAGCAACCATATGACGAATCCATGTGTTCCA 2532500 26 100.0 39 .......................... TGATGTTTCTAGACAGCTTTACTCCCCACCCAATCTCCT 2532565 26 100.0 39 .......................... AATACACATAATCTTCATCGAAACTTGGATATACATATC 2532630 26 100.0 41 .......................... GATTCATTATTAACAAGAGCGAACACGTTCTTCTGGTTACC 2532697 26 100.0 38 .......................... GAAAAGGGGTTCTCCGCTGGGCTAACGTCAAACCCCGT 2532761 26 100.0 38 .......................... TCGTTGTTCCGGGCACAAATTGAAAGGTATTGAAAAAT 2532825 26 100.0 37 .......................... TCTTCAGTCCAACTAAAACACAGCTTGGGCTTATCGA 2532888 26 100.0 39 .......................... TGGTTCATCTTGACCATCCCTCAAGTTGGACTAACGTAA 2532953 26 100.0 40 .......................... GTATTACTTAGGGCCACCAAAACCACTCCGATTTTTCCGT 2533019 26 100.0 40 .......................... GGATATGGGGCGGGAGGAAACGGTGGAAACACAAATTCAG 2533085 26 100.0 35 .......................... AAAATGCTCCCGTCCGCTAACACGGCCCCTGCAAG 2533146 26 100.0 38 .......................... TTTTTTAAGGGGAGAGTGGCTAACGACCACCCTCCCCC 2533210 26 100.0 40 .......................... GTAGAAAGTGAGGTCCACAACCCTTCTCCATCAGGATTAG 2533276 26 96.2 0 ..C....................... | ========== ====== ====== ====== ========================== =========================================== ================== 51 26 99.9 39 GTTGCATCCCAAAAAGGAATTGAAAG # Left flank : AAGTGAAGAACATGTAGAAAAAATTACACTAGAAGAATTAAACTTTTCCCGAAAGGGGAATTTTGAGGGCGTAAAAATGTTTTACTTAAGTAGATGGGGGGAATGAGGGAAATTAGGGAATTTAAAAGAAAGTTTATTTGCATTCTGGTGCCTACTTTTGGAAAATGTGGTAATATACATGTTGCAAAAATAGATAATTTTTAATGTTATAATACGATTTTAGAACTTTTAATTTTATGTGAAGGGAGTAATAAGTACGAATTTTACGTATTGTTTAAAAACGATAAAGTTCGAGTCTCAATGCGACCGATACGAGATCTTCTAGAAAAATTAAACGTATATAAACCTTTTCCGCCTTTCAAATCTACCAGAAGACCATGCGACCAAAAGAGGCTTGGAAAATTACTAGGAAATACGGTCGCATGACTGGAGTACATAAATAGAGAAAATTTATTAAGGAGGAAGAGAAAAAATATCGTAAGAAGTAAATAAGCAGGTGT # Right flank : GGTTATATTCTAATGTAGTACTATATTTTCTTATTTTAACGAGGGCTAAGAGGGCGTAAGACTCCATCCATGGGGGGATAGTCCTCCACATTTAAATATGAGCTTGAAGTTAATACATAGATGACAGTCACTGATGTGATGTGGGTCACCAAGACGCCTCAAAGCGAGGATCTACGCGATGAGCTTGTGCTCTAATCAGCAATTCCATTGGGGACATTGTAGGCTTACGTCAATGATCGGGGTTAGAACTACTCTTAGCATCTGTGGATCTACGTCCTCTGGTACGGCGAGGTGGAGTCATGAAACAGGAAGTCATGTCCTTGAGGACAGGGCAGTTCACTAAGAACGAGTGTGTTGAAAAGCCAAAAAAAGAGGGGACTGTCTGAACATGAACGATAAATCTAGATCGTATAAGTTAATAATAACGGTATCAATGACGTTGATTGCATTACTATTAATATTAACTTTGATGCTACAATTACAAAACAACAATCTAGGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCCAAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //