Array 1 312388-312120 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOEP01000002.1 Amycolatopsis arida strain DSM 45648 Ga0181038_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 312387 28 100.0 34 ............................ AGTGCGTGTTTGACGCGGAGACGCATGGACGGAT 312325 28 100.0 33 ............................ CTCCATCTCGCCGCGAGCGCAGTACTTGGTCTC 312264 28 92.9 31 .....................AC..... CACTACAACGCGATGAGCACGTCGGGAGCCG 312205 28 75.0 30 .........C.G..G.T.......CCG. CTCGGGCACGAGCGTGGCCTCGTCGACGTA 312147 28 75.0 0 ...........G....T.....ATCCG. | ========== ====== ====== ====== ============================ ================================== ================== 5 28 88.6 32 GTCTTCCCCGCACACGCGGGGGTGGTCC # Left flank : TCGCCTTCGGGCATCACCCGCTTCCGCTGGGGCGGTGCCAGGCGCGCCCACAGCCAGCCGAGCGGCATGCCGACCAGGCTGACCATGGAGAGCACGATGATCGCCGGGAGCAGGTCCGCCTTGACGACGACCCGCGGGCGCTCGCGCGGCACCCCGGGCAACGCCCGGCCCGGCTCGGCGGCGACCCGGCGGGACCGGACCGGCGACCCCGTCACAGCGACCTCCCTGCACGCGAACTCCCCGTCCCGCGAGCCTAACCGCTGCTCGATGGCCGCCCCACACCCCCACACACGGCCACTCACCCAAGCGAGTGGCGGTTGACCGGCCCGACGGGCTGGCGAGGTAGCGCCCGGTTGACCGGCATTCCGCCAGGGAACTGGAACCAACGCCGAAGGGCGGCTGCCGAACCGGCCGACGCCGGCGCCGCGACGCGTTAGACTCTGCGGCACAAAGTAAATGAAATTCGCCCCAGAGCCGCCCAAACCCGCAGGTCAAGGAGT # Right flank : ACGAGGTCTCAGCCGGGGGCGGTGGTTTCGCCGTGGCGGCTGCAGCGGGCTGACCAGCCGGACGGGGTGATCTGGACCACCATGCGGCGGGCGCAGTGGTGGCAGAACCGCGGCGGCTCCAGGGCCGTGCGGGGGTTGCGGCACGCCACGTGCTCGGGTGCCTCCTCCGCGGCGACCGGCTGCCCGCACCGCACGCAGAACCCGGAACCGGTCACAACGTCTCGCTCAGCGCCTTGATCGGCATCTTCAGGTCGGCCAGCATCGCCAGGTCCTGCTCGGCCGGCCGGCCCAGGTTGGTCAGGTAGTTGCCCACGATGATCGCGTTGATCCCGCCCAGCATGCCCTGCTCCGCGCCGAGGTCACCGAGCGTCAGCTCGCGCCCGCCGGCGAACCGCAGCATCGTCCGGGGCAGCGCCAGCCGGAACGCCGCCACGATCCGCAGCGCCTCCTTGCCCTCGATCACCGGGTAGTCCTCGTACGGCGTCCCCTGCTGCGGGATC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.43, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACACGCGGGGGTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 245836-246231 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOEP01000001.1 Amycolatopsis arida strain DSM 45648 Ga0181038_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 245836 29 100.0 32 ............................. CCGCCGAGCACGTACAACACGGTGGTGTTCAT 245897 29 100.0 32 ............................. GTAGGTGTCCAGGCCCCGGTACGACGACTGGG 245958 29 96.6 32 ............................G GACTGCTTCGTCCGCGCAGCGCTCGATACGAA 246019 29 100.0 32 ............................. CCGACGCCGAGCTTGCGGGTCTGCTGCCCGAA 246080 29 96.6 32 ............................G GCGGGGCGCGTCACCGACCAGCAGCGACGCCG 246141 29 89.7 33 .........A...G.........A..... GTCACCAAGCGCGCCGGTGCGGGCTCGCGGTAA 246203 29 89.7 0 .............G.............GT | ========== ====== ====== ====== ============================= ================================= ================== 7 29 96.1 32 GTCTTCCCCGCACCCGCGGGGGTGGTCCC # Left flank : ACCCCGAGCAGCGCGGGCGCCGGGTAGCCGGCGAACGTGGTGAGCACCATCCCGGGACCGGTCGGCTTGCCGCGGGACACGGTGACGCCGGAGGTGTCCGAGTGCAGCCGGATGCCGCGCAGCCGCCGGCCGCTGAGCACGGCGAGCAGGGCGTGCCCCGCCTCGTGCACGATGGTGATCACGTGCCGGGCGAGCCGCCACGGCCGGCGGGCCAGCACCAGGGCGAGCGCCGCCACCCCGGCGACGAGCGCCACCGCCGGCGGCGGTGGCGCCTGGGTGTCGAACAGCCGCCAGATTCCGATCGCGTCGGTCAGCTCCACCTGATCAGCTCATCACGACCCCCTTTCGTTCGAAGTAGGCACCCCCGCGGGGCGACGATGCCTGGCGCCCCGGACACCGACGGCCGATCCGTCGCCGCCGGCACGCCGACCCGCTAGACTCTGCGCCACAAAGTAAATGAAAACCGGCCTCGGGGCGCGGAAACCCGCAGGTCACGAAGT # Right flank : TGCTGGTCGGGCGGCACGGGCAACCGCGTCATGGTGCGTCCCGGCGCGGCCGCACCGCCGGCTGGTCACGTCAGCCTCCCCCGCGGGCGGTCGGGCCCACCGGCTCGGGGGTGTCGTCGGCGAGGCGCACCAGGTGCGCCGCCCAGCCGCGGTACGGGCGCCACCGCTCGGCGAGGCGCTCCAGCGCGGGCACGTCCGCAGGGCCCACGCCGTACCGGCGCGCCATCGCCACGCGCAACCGCCAGTCGTCGCGCGGGAAGACGTCCGGGTGGCCCGCGCCCCGGCCCAGCACCAGCTGCGCCGAGTGCGGCCCCACCCCGGGCAGCTGCCGCAGCCGCCACAGCGCCTCCTCGGCCTCCATCCCGCGCAGCCGCTCCGCGTCCAGCTCGCCGGACCGGGCCGCCAGCGCGATCGCCCGCAGCCACTCGACCTTCCGCTCCGGCAGCCCGGCCACCCCGTCGACCTCGGCGAGGACCCCGGGCGCGGGGAAGGCGCACAGC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACCCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 854570-854905 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOEP01000001.1 Amycolatopsis arida strain DSM 45648 Ga0181038_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 854570 30 93.3 31 ............................AT TGCGGTAATGGACATCGGGGGTCCACGACTT 854631 30 96.7 31 .............................T TCGGGAAGTGGATGGTGTCGCCGGGCTTGCC 854692 30 96.7 31 ............................G. TGCGCGCGTTGGTGATCTGGCCGTGCAGCTG 854753 30 100.0 31 .............................. TGGCGGAGGCTTCGTCGATCTCGTCGATCAG 854814 30 100.0 31 .............................. CAGACGCTAGGTCCGCCTCCGGGACGTTGAA 854875 30 83.3 0 G............G...........GGG.. | C [854899] ========== ====== ====== ====== ============================== =============================== ================== 6 30 95.0 31 CTCTTCCCCGCACACGCGGGGGTGGTCCCG # Left flank : TGGGCCTGCGCGAGACGCGTCTGGTGCACCGGGTCCCCGCCCACCCGCTCGCGTCGGTGCTCGACGGCCGCACCGTGGTCATCACCACCTGCGGCGTCCTGGGCTGGCTGCTCCGCGACGAGCCACCCACCACCTGGCCCCGCTGCACCTCATGCCATGACACGCGGCGAACCCCTCCTGCCCCCGAGTAGCAAGCGACACGACCGGACGACACCGCGAACCGGACCGCGGCCCGAACGACGAAGGCCCGAAGAACACCTGGGCCGAAGGCACTCAGCGAGACGAGCGGACCAGAGCACCGGCCAAGGCGACCGGCCCGGAGGACACGTCCCCTGATCACCAACCCCGAACGCGTTGGCCCCCGAGTGGCGCACCGCTCCCACGACGTCCACTGACCGCGGTAGTGTCGCCCTCGCCGCAGAGTTCCCGACCCGCTGGCTTTCCAGGACAAAGTAAAGGAAAATCGACCAGAAGCCGCACAAAACCCCTGGTCAACAAGT # Right flank : GATCATGTCCCGTTGTGCCGACCGTGTCGCGTGCTGCGGAATTCCGGGGACAGGGGCGGCCCGCACTCGCTATGCTCGGCGCCGCTCATGGAGTAGATCAGCGGTAGATCACCCGGCTGTTCACCGGGAGGGCGCGGGTTCGACTCCCGCCTCCATGTCGACGGGACCAACCCGCACTACCTGGCGTAGCTCAGTGGCAGAGCACCCGGCTTCGGACCGGGAGGGCGCGAGTTCGACCCTCGCCGCCAGGTCCGCCCCGACCCGGAGTCCGCCGTGCCCCACCACTACGCCCTCGGTCAGCTCCACCGGGCCATGGCCAGGCTCGCCGATCTCGACGACCCGGCGGCCCGCGACCGGGCGGCCGCCAAGGTGCGCCGCTGGCGGGACGTGCTGGAGGGGATGGCCAGCGGCCGCGTCGAGGTCGGCTCGCGCACCCCGGTCGCGGACACCCCGGCCTGGGTCACCCTCGAGGTCGCGCACGGCGGTTTCGCCACCGGCCG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCACACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 857624-858508 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOEP01000001.1 Amycolatopsis arida strain DSM 45648 Ga0181038_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 857624 30 93.3 32 ............................AC TGACGGGCCGAGCTGACCAACAGTGTCACCAC 857686 30 100.0 31 .............................. GCTGCAAGCCTTTGAATTTGTTCAACGCGGT 857747 30 96.7 32 .............................C CGGTCATCGCGGACGTGGTGCAGACCCAGTCC 857809 30 93.3 31 ............................TG ATCCGCCGCGGCTCCGGCGGCCGGCGGGAAG 857870 30 100.0 31 .............................. GCCGTGTCTCGCTCTCGGTGAGCACACTCGT 857931 30 100.0 31 .............................. CGCCGAGCTCGGCGTCGCCGGAGACGACATC 857992 29 90.0 31 .................-..........GC CCTAGAAGACTTGGCAGACCCGGACTGGACG 858052 30 96.7 31 .............................A GCCGGGGCACGTTATGGAGATGGTGGTACTC 858113 30 93.3 32 ..............G.............G. GGCTCGGTGACAAGCGGATCGAGTTCTGGTCA 858175 30 90.0 31 ..............G.............GA TCATGAGCGGGTGGGCGTGTCGCTGGACACG 858236 30 90.0 31 .....T........G..............C GCCCTGCCTATCCGGGACTGTTCTCCCCAAC 858297 30 96.7 31 .............................G GATGCGCCGACCAGTCCCTATTCCAGTCGAC 858358 30 93.3 31 .....................A......T. GCGCGCGCTGGCTCGCGTTCAGCCCGAGGTA 858419 29 93.3 31 .................-...........G GGGAGTTGATCGGCAACTCTCGTTCGGAGTC 858479 30 80.0 0 C..........A.G..T........C...A | ========== ====== ====== ====== ============================== ================================ ================== 15 30 93.8 31 GTCTTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : GGACCACGCGCCGGACCTGGCCACGCGCACCTTCGCCTGGCTGGTGCGCCGGCTCGGCCAGCCCGCCGAAGGGCACGCCGCGCTGATCCAGGTGAAGAACGCCGCGTACGCCTGGCGGCAGGCGCTCTTCTACCTCAGCTTCTGCACCCCAGAGGAGCAGGCGGCTCAGGCGGACCAGCTGGCCGACCAGGTCCGCCGCGCCGGCCTGGCCGCCCGGTTCGGCCCGGCCGTGGACGGGCTGCTCGGCGTGCTCGCCGGCCACCGCTTCACCGCGACCGGCACCCTTCCGGGCTCCCCCGGCCGCCGGTTCCTCGGCTGGGCCGGGGAGCGGCACTGGTACCTGGCCGAGCCCGGGGCACGTTGATCGACCACGCCCGGTGCTCGGCCAGCCAGACCAGCGGTCCCGGGCACCCGCTCGATCGTTCCCCGACACGCTGGCTTTCCACGACAAAGTAAAGGAAAATCGACCAGACGCCCCGAAAAGCCCCAGGTCAAGAAGT # Right flank : ATCACCGAGTACCGGCGGTTGCGCGCTCGGATCGTCGCCGCCCTCGGCAACCTTGGCCGACCCCGTCAGCGGAACCGCTCGGCTAAAGCAAGTCCCCGACGACCCCGCCCGCTGAGTCCCACGCCGCCTCACGCCATGAAGGCCACCTTCATGGCGTCGTCAGCCGGCCGAGGCCAGGAGGCGTTGGGCGCGCAGCGCGACCATCATCGCGAAGCGTTCCTCCGGGCAGGAGAGCCGGTCGCCGAACAGGCGTTCCAGCTGGTGCATGCGGTTGCGGATCGTCTGGGGGTGGACGTGCAGCTTGGCCGCCACCTCGGGCGCGCCGCCACGCGAATCGAGCCACGCGAGCAGCGTCTCGCTCAACCGCGCGCGCTGCTTCTCCGTCAGCGGGGCCAGCGGCGCCAGGCAGCGCTCGGCCATCGCGTCGGCCAGGAACTCGTCGGCCAGCAGCCACAGCGAGCTCAGCTCCTCGGCGAACCACACCACCGGCCCCTCGCCGA # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 877680-877038 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOEP01000001.1 Amycolatopsis arida strain DSM 45648 Ga0181038_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 877679 29 96.6 32 ............................G CAGGGGCGACCAGGCGCCCCGGTCGGCCGAGG 877618 29 96.6 32 ............................G GACGGAGGAGGATGCCGGAGTACCGATCCGTA 877557 29 96.6 32 ............................T GTCAGAAGGCATTGACTAGCCCTTGCTCGTAG 877496 29 96.6 32 ............................G TTCAGGGTGACACCGGAATCCTGGTACACACC 877435 29 100.0 32 ............................. TCCTCGGGGAACGCGATTGGGTCCGGGATCTC 877374 29 100.0 33 ............................. GACAGTAAGCAAAATTACATTGACGCCGCAGAA 877312 29 100.0 32 ............................. TACTTCCCTCGGTACGAGCGGCCGCCGATGGC 877251 29 100.0 33 ............................. CGCCGCTGACGCGGCCGGCGCCGGGGGCGGTCA 877189 29 100.0 32 ............................. ACCGCCGGCGGGTCGTCGGGAGCCTGGGTGTA 877128 29 89.7 33 ....................A......GA CTGGTACAACGCCCCTCGCGTGGGCGCAGTCCG 877066 29 89.7 0 ...........GG...............A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.9 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGACTACGACGGCCGCGAGGTCGCCGGCGGAGTCTCGTACGGAAGCGACGAACCGTGACCGTCATCGTGGTGGCGGCGTGCCCCGTCGGGTTGCGCGGGCACCTCACCCGCTGGCTGCTCGAGATCGCGCCCGGGGTGTTCGTCGGCACGATCAACGCACGGGTGCGGGCTCTGGTGTGGGAGCGGGTCGTGGAGATGGTCAAGTCGGGCCGGGCGATCATGGTGTACTCCGCGCGCAACGAGCAGGGCTTGGCCTTTGAGGTGCACGAGCACGAGTGGCGGCCGGTGGATTTCGAGGGCGTGCACCTGATGCTCCGGCCCAGTCCCGTGGAGGAGTCCCTGCTGAAGAACGACACCCCAAGGTCGGTCGGCTGGAGCCGCGCCAGCCGGCGCCGCCGCTTCGGCACCCGCTAGCCGGCGCCGGCACCCAGCTCTTTACTTTACACTACAAAGTAAATGAAAATCGCCTCAGGCCCGGACAAACACGCAGGTCAACAAGT # Right flank : CTCACGGTCGTTGCGTCGCGTCGGATCGGGAGTGGAAGTTCTCTGCCTCCCCTTGGGCCGCGGGAGTGGGTTTCGTTTGCGCCAGGGAGTGGAGCGACCGTTACTGGCGGACCAGTTCGGCGGGGTCGAGCTCAACCGGGAAGGTGCAGGGAATCACGGAGCGCGCGCCAGCCGGGGCGGTCACAGTCTCGATGTACTGGCCTCGGCGCAGTTCCGAGACGACGATGTGTGGTTCCGGAGTCAGCTCGAAACGCCAGTAGAACGCGATGCCGGTGTCCGCGTAGAGCTGAGGCTTGATCAACCGGTCATGTGGCTCGCTGCCCGGTGAGACGATCTCGACCACCGCCAGCACGGTGCCGGGCGGGCATCGAGTCGGGTCGGTGGCCGCGAACTCGCGCTCGATGACGGCGATGTCCGGCACAGCCAGGCGCCCGCGGGGTGCCTCCACGTTCACCGCTTCCAGGACCTCGACGGCTGCGCCCGCCGTCAGCGCGGCCTGT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 888602-887348 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOEP01000001.1 Amycolatopsis arida strain DSM 45648 Ga0181038_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 888601 29 96.6 32 ............................G GTGGTATCGCCCTGGTCTCCGGCCCAGGCCTG 888540 29 100.0 32 ............................. CTCACCTGGGACGTAGGTCCGGTCGTGCTGGT 888479 29 100.0 32 ............................. AACTCCTCCGGCGGCATCGCCGGACGGGGGTC 888418 29 96.6 33 ............................A CTGGTCACCGCGGCGATCCTCACTGGCCAGGAG 888356 29 96.6 32 ............................G CGGACCGGCGAGCGCCGCGGATTCCCGGTGCG 888295 29 96.6 32 ............................G CAGCCGCAGCCTCCAGGAGCCCAGCAAGTTCC 888234 29 100.0 32 ............................. CGCCCCTCGCGGTCGCCGTGCGCCCACTGGCG 888173 29 100.0 32 ............................. CGCGCCGCGCACGCCGAGCTCGACGCGTATCT 888112 29 100.0 32 ............................. AAGTTCGTGGCCGAGTCCCAGTTGATCCACAC 888051 29 100.0 32 ............................. ATCAACTTTTCACCCGGGTCGGGTAGTTGCAC 887990 29 96.6 32 ............................G TCACCGCCGACCGTGTGGGCGGCCCCCACCTC 887929 29 100.0 32 ............................. GCCCGAAGCTAGCAGAGGCAGACGGACCACCC 887868 29 96.6 33 ............................G CACGGCTCACCGGGCCCTGGCGAGGGTGAGCAG 887806 29 96.6 32 ............................A GACCGAACTTGGTCGCATCGTCGCCAAGGAAA 887745 29 100.0 32 ............................. GACTGGTCTGGCCGGCTGATGAACGTCTACCG 887684 29 100.0 32 ............................. GGCGCCATGGATCTACTGACGCAGCAAGGTCT 887623 29 93.1 32 .....T......................G CATTTCGCCAGCAGCGCAGGTAGCTCGGCGTG G,G [887601,887620] 887560 29 86.2 32 ...........G.A.....A.G....... AGCGGGAGGGACCCGACGCGTCAGCCGCTCGC 887499 29 89.7 32 ...........G.A..............G GGGCGGGTGTAGCTGCGCGCCTCGCCCGTCGC G [887478] 887437 29 86.2 32 ...........G.AG.............G TCACAGCGCGGAAACTAGGCCACCCCGCGTAC 887376 29 82.8 0 ..........TG.AT.......C...... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 95.9 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AACCATCGAACGCACTACCCCGCCCGTTGCACCTTCGAACTAGTGTCGTCCACCACAGTCGCGGAGGCTGCTCGCGGAGGGTGTTCGCGCAGGTAGCGGGAGGTGTGCGGGGCCCTGGTGGGCCGCCGCCGGGTGGGGCTCGTCGGGCCGCCGTTACACTGGGTCCGCGCACCCGTGGCCGCGGTGGACGCGGCCGTGCCGGCATAGCTCAGCTGGTAGAGCATCTGTCTTGTAAACAGAAGGTCAGGGGTTCGAGCCCCCTTGCCGGCTCCCTTCCGACCAGCGGATTCCTGGCAGCGCCGGAGTCCCCTGGTCGGTCTGGTCCCAGTTTCCGTCTCAGTTGCCCTCGATGGGCTCGTGGCGGGCTGTTCCAGTGACGACCGCGGCGACGAACTCGCCCCTTTTCGACAACCACTGCCCGTCGGAGCGCTGTCTTTACTTTTCCTGGCAAAGTAAATGAAAACCGACCCAGGGCCGGATAAACTACCAGGTCATGAAGT # Right flank : GCTTGCCGGGTACGCAGCGACGTGCCGCCGCCGGTGCTCCCCGCGCAGGGATGGGCCTAACGCGCAAGCACGTTCAGCTCGAACGTGCTTGCAAGTTAGTTGTTAGGTAGCTGACCTAAAGCTGCTCCCCGCCGCGTTCGGCGGGGCTGACCCAGTGCTTGCGAGGTAGTGGGTGTCTTCCCTGCTCATGCGGGGTATGGATCCGGCGCCATACGACGAGCTCGTACACGCGGGTAGGGGAGGTAGGAGGGTCATGGCTCGAGGGCGTGGCGGGCAGGCGGACGACAGATGGGTTGAGCAGGTCCCAGCATGCAAGTTGTGTAGGAACTTTCTTGCGGGACTAGTTGGTGCTGGTATTGGAGCCACCGTCGGGGTCAGCCTCGGGTTGGTGATGAGTGGAACGTTGCCACACCTGGCGGTGCCGTTCGGCGTCCTCGGGGGTGTCAGTTCAGCCTCTGCGGTTGCCCTGGCGGCTGCGTCTCGGCTTAAACGTCTTCTCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //