Array 1 91832-89301 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNUX01000003.1 Nitrosomonas ureae strain Nm13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 91831 28 100.0 33 ............................ CATACCATGGCCTGGAATCAATGTGCATGTCCA 91770 28 100.0 33 ............................ CACGACAAAGGAAATGAGTGAACGTGAAGTAAT 91709 28 100.0 33 ............................ TATCAAGCTGATAGCAACATTAATATAATGATT 91648 28 100.0 33 ............................ CTTTCAACGCACCATCCGTTATCACTTCAATCT 91587 28 100.0 33 ............................ TTCCTTCAAATGGGAGTGTGGCCAAGATGTCAC 91526 28 100.0 33 ............................ CAGATATCCGGGATAGAAAAACAGTTGCCGGGT 91465 28 100.0 33 ............................ TCAGTCACACGGATGTTACTGATTAGGTTATAA 91404 28 100.0 33 ............................ TAAAATAGACTTGTCAACTATTATTTAACAAAA 91343 28 100.0 33 ............................ TCGGATTTTACGCGCTTTGGCTTAATGAGGCTA 91282 28 100.0 33 ............................ TTCAGACTTGAGGAAACTGTGCTAGTAGAGACG 91221 28 100.0 33 ............................ TTTCGTGGATACTTGGACGTTACAAGGCAGATT 91160 28 100.0 33 ............................ TGATACAGCGTATCGCCATCAATTCGGATTTGC 91099 28 100.0 33 ............................ CCTATTTCTTGAGTATTTAGCGAGTCCTTTGTT 91038 28 100.0 33 ............................ GACGGCGTTACAGTCGCCGCGCCGCAACCTTTA 90977 28 100.0 33 ............................ TAATCATGCCTCCAGAAAATCAAATTGATAGCA 90916 28 100.0 33 ............................ CACTTGCTGGCACAGCAGCACTTACATGACCAA 90855 28 100.0 33 ............................ CCAGATTGATACACCGCGATTGATTTGTCCGGT 90794 28 100.0 33 ............................ TATAACAAATTGCGATTGGATGTTATAGATGAT 90733 28 100.0 34 ............................ TAGATCACGATGGTGGAATAATCGCCGGTCATGG 90671 28 100.0 33 ............................ TAATCAAGGTACATGTCAACTGTTTGTGTGATC 90610 28 100.0 33 ............................ TACGGTATTAGACGCGGGTTTCAAAGCGATGAC 90549 28 100.0 33 ............................ CACTGAATGATCCGGGAGCTTGCTCTTGATTGC 90488 28 100.0 33 ............................ CATGTGCCGATGTTCCCGAGACTGCACCTATCT 90427 28 100.0 33 ............................ TAATGCAAGGGTTAAAAGGATATGCTCGCCATG 90366 28 100.0 33 ............................ TACGCCATTAAGATAAAAACGTGTAGCAATTAC 90305 28 100.0 33 ............................ CACCTATAAAGTCGGGATTTGATAATCCTCTGG 90244 28 100.0 33 ............................ TACGCCGTTTTTTGCCTTCAATAATTAAATCAG 90183 28 100.0 33 ............................ CATCATCGGACTGGGATTCCAAAGAATCACTAC 90122 28 100.0 33 ............................ TTTGTGATGTTGAGTTTGACATCAAGCCGGGTG 90061 28 100.0 33 ............................ CATCGAATGGAAAAAGAAATGCTACAGAATAAA 90000 28 100.0 33 ............................ TTTCGCCGGTGTCGGTATTTACGTTTTTAACTG 89939 28 100.0 33 ............................ TGCCGTTGGTTGAGAAGTATGCTCTCAAAGTGG 89878 28 100.0 33 ............................ TATTCCATCTGATAGGAATTTTGCAATGATTAT 89817 28 100.0 33 ............................ CGTGATCGTATTTGATACCAAAGGAGAGCCTGC 89756 28 100.0 34 ............................ TACATCAATGCGAAAATTTCAAACGTTGGCTAGA 89694 28 100.0 33 ............................ TGAACAAGGTCATTTAATATGGAAAAATAGACC 89633 28 100.0 33 ............................ CTTCTAGGCGTGAAAGAATCGCAAGTAAAGGTC 89572 28 100.0 33 ............................ TCAATGTTCGAGCTTAATCTTTGCATTACGATT 89511 28 100.0 33 ............................ CGTATCAGCCCCATCAGGAGGATCCTAGTATCT 89450 28 100.0 33 ............................ TCCATCCGGGCTTGATTTAAAAATGATGAATTC 89389 28 100.0 33 ............................ TTCAATCGTGATTTCCGAGTGCGCTGAGACTTG 89328 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 42 28 100.0 33 GTTTTCCCCACGCTCGTGGGGGTGTTTC # Left flank : TGGCCGGACGCTACAACAAGCACAAAGTATCTGATGCTTTTCGTCAGCGTGTCATTGAGACGGATTTGCTGGGTAAGATAGGCCAAGACATTGAGTCCATATTGGGAGTGAAAAATGCTCGTTGTGATAGCCAATGATTTACCGCCTGCTGTGCGCGGGCGAATGAAACTCTGGTTTATTGAGCCACGTCCCAACGTGTTTATTTCAGGAGTAAAAGATGCGGTTGCTAAAAAAGTAGTGGATTATTTGCACCGCCACTGCCCGCTTGAAAGCGGTTTGATGATTTTTCGGCGTATTCCAGAGACGCCTGGTTATGAAATATGCGGTGTAGGTGATACCAAGCGCAATCTTACCGAAATTTCTGGTTTGCAATTAGTAATTGAAAAATAAATACTGACTGAAGCCGTGGGTTTAAAGTTATAGTATTTCAGTATGAAGAGATTGGATTGCTAGAACACAACCAATAGTGTTTTAGCATCGCTCTTTAACAATTTGTTGGG # Right flank : AGTGTCAACACATGTAAACACTCCGGGAGAGTAAAGCCCTAACATCAGAGTTCACTACCGCGTTTATGGTGGTTAAATGTAGTAATCCTTTAATGGCGGAAACCCGTTGAACTCCACTGAGCTGTATGTCGTTGTGTAGGCGCCAGTTGACAGCCAATATAATCGATCTCCCGCTGCGAGATTCAAGGGTAAGCCGTACTTATAGTTTTCATACATAATGTCTGCACTGTCGCATGTCGGTCCGGCGATGATCGCGTTCTCAAATTCGCCGTTCTTCTCTGTGTAAATCGGATACTTGATTGATTCGTCAAGTGTCTCGATCAGCCCGGTAAACTTCCCGACGTCGGTGTATATCCATCGATGCAGCGCTGTACGTGATTTACGCGAGATCAGCACGACTTCGCTGACAAGCACGCCAGCATTGGAAATCATTGAACGGCCGGGTTCGATGATGATTTCGGGCATGTCATTCAGGAAATCTTCGTGCAGGAATCGCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCACGCTCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48142-48959 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNUX01000007.1 Nitrosomonas ureae strain Nm13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 48142 32 100.0 33 ................................ TCCAAAAGTAACGCCTGAAATAGAGGCGGTGAA 48207 32 100.0 34 ................................ ACCGATAGACGCACCAAACATGCCCATAGTGGCT 48273 32 100.0 34 ................................ GGGTGTGGAGCATCCGGTATTGATGTTGTACATG 48339 32 100.0 33 ................................ TTGACTATTACGCCATTCTTTATCGTTAAACTC 48404 32 100.0 33 ................................ GGCATTCAGTGATTATAAGCCTAATTTGCTGAA 48469 32 100.0 33 ................................ AGAACTTTTTTGGAGCGGTAGTTGCTGCAAGGC 48534 32 100.0 34 ................................ CGCCGGCGTCGAATCGCGTCATCTCATCGATGAA 48600 32 100.0 33 ................................ TGAATACGGTTAAAAACGTATTTTGGCCGGGTG 48665 32 100.0 34 ................................ AGATATCGGACTCACCTTGATTTCTATGGACGAC 48731 32 100.0 33 ................................ ATCACACCGAAACATCTGAGCCAATTCGAGGCA 48796 32 100.0 34 ................................ TAATGAGAATCGAACGATTCGATATGTTTTAACA 48862 32 100.0 34 ................................ ACCACTCCTTGTTTCCCGTGGACTTGTCAGAGTC 48928 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 13 32 100.0 34 GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Left flank : TGCCTTTTCTGTGGAAATAGATTAGAGGTTTTCAGATGATGATTTTAGTAACTTACGATGTCAGCTTTAAAATCGATACCGGGCCAAAACGTTTACGCAGGATTGCAAAATTATGCCTAAACTACGGCCAGAGAGTACAGTATTCAGTATTTGAAATAGAGGTTGATATGGCACAATGGACAAAGCTAAAAAATGAACTAATCGACGTTATTGATGAAGAATTCGATAGCTTAAGATTTTACTACCTGGGAAATAACTGGGAACGGCGTGTTGAACATATTGGCGCTAAAACAGTATTAGATTTAAATGGCTTGATATTACTGTAATGCGAATCCTAAGCGAGCATAAAAGGATCAATATTTTTGCATTCATTAAGATAATGATTTTTCTTATTTTTTATTTCAGCAGTAAATAATTTATAATACTTTTCGCAAATGCGTCCATTGATTCGCAATTTATTGGTTCTTTAACCAATGATTCCAATCAATTAAGCATACGCT # Right flank : CATCAGTTATTAATTCAACCATATCGGTTGTCAGCGCAGTGGTGTACGACATGACACGGAAGGTAAAAAAACCACTCTTTGCTTTAACTTCCGCAGCTATTCATGCCTACTTCGTTATAGTTCGATGTTTCGTCACTTTACCCATCTGCTCGAAGAAGCCTTCTGAAGTAATTCAATGGCAAATTGGGTTAGGTGCATTCTAAAAGTTTGATGTATTACAGAAAAATTAAGAATTCAGAGGTCAAGAGAATATAAAATACAGTAATATTTACAGTAGTTTTTATAAAAGTAATAAATATCCTCTGTCTGTCGATGTTTTCGATTCCGGCTCCGCTTGAAATTTCATGTTATATCAGACCGTGAAGCTAAATTACCTGGTTTTTTGCCGAGGATAAAAGTAATTTAACTAACCTAATAGCGATTCAATATGATTTCCAGCACAAATTTACTGCCGATATAGGCTAGTAATAATATAATGAATCCGATCAATGTCCAGCGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //