Array 1 28110-28720 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRKB01000002.1 Bacteroides fragilis strain 143 Contig0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 28110 29 100.0 34 ............................. GAACGAAAAGGCGGGCTGGATTTCAGCGGACTTC 28173 29 100.0 36 ............................. GGAAATGGCGGAAGGATTGGCCGTCAGGGTAACTGA 28238 29 100.0 37 ............................. TTAATCATCACATTGATCTTCTTAATCGCTTCATCAG 28304 29 100.0 34 ............................. CCGAGTACTTGTACATCGTACAGTTTCCCTTGCT 28367 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 28430 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 28495 29 100.0 35 ............................. AAAAGAGAGCACTTGATGCAAACGAAAAAGAGCAG 28559 29 100.0 37 ............................. GTCCTAAACGAAGGTCAACAAACCAACTTTCATCGTT 28625 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 28691 29 93.1 0 .........................G.C. | A [28715] ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.3 36 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTTGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGGTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : TAAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGAAATTTTTTCTTCCTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTGATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 407-2441 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRKB01000010.1 Bacteroides fragilis strain 143 Contig0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 407 47 95.7 30 ...A......A.................................... CCCTACCGTTGCAATAGCTACAATCATGTC 484 47 100.0 30 ............................................... TATGCTGTCCTGCTGTACGTGCGGCAATCT 561 47 100.0 30 ............................................... ACCAGTCAAAGATGAACCACTGATAGAAGC 638 47 100.0 30 ............................................... GATATCACCGGTTACTTTCTTAATCAACTT 715 47 100.0 29 ............................................... TTTCCGGTTGAAATTAGAGCGTGAAAAGT 791 47 100.0 30 ............................................... CACCAGCCTCAGAACCAAGAGAACCAACGT 868 47 100.0 30 ............................................... CTGGGCGGACAGAATGGATAGGTAGGAGAG 945 47 100.0 30 ............................................... TATGTTCCGGCTGTGTCCGGCAATAGACAA 1022 47 100.0 29 ............................................... GTTGTTATTCGTTTGGAATCTGCGGTTAT 1098 47 100.0 30 ............................................... AGGAGATGTAGGGGAACAAAGAACCATTCA 1175 47 100.0 29 ............................................... TAGGTTTCAGGTTGAGCCAAAGAGAATGT 1251 47 100.0 29 ............................................... ACTTCTGCAAAAAACACTTCTCCCTCTTT 1327 47 100.0 30 ............................................... AGGCAACGCCATTTCCTGAATCAAAGCAAA 1404 47 100.0 29 ............................................... GGATTAATTTTAAACCAAGAGTAAGTTAA 1480 47 100.0 29 ............................................... TTACCAATTTGATTAACAACACCGCCGGC 1556 47 100.0 30 ............................................... TGCGTGTGAAGGCAGAAGTATCCACAGGTT 1633 47 100.0 29 ............................................... AGTTAAATAATGAACCACCAAGTTCCTTA 1709 47 100.0 29 ............................................... CATAGCGAAGTTCAAATACCGAGTCATTC 1785 47 100.0 29 ............................................... AAGTAAATTCTTAGCTTGCTCTTCCTTAA 1861 47 100.0 30 ............................................... TTAAGCTACGTAAAGAACTGAATGAATTAA 1938 47 100.0 29 ............................................... CGTTTGATTCTGTTTAGTTTAGTAGTCAA 2014 47 100.0 29 ............................................... TTCATGAATGGCGGAAGTTATACCGGTAG 2090 47 100.0 29 ............................................... ACCCAGTAAAATTTAACAAAGCTATTGCT 2166 47 100.0 29 ............................................... CTACTTATCCAAAAGATAAGGAGCGTTAA 2242 47 100.0 29 ............................................... TCGGGAGTAGGTAGTACTATCGAGGAACT 2318 47 100.0 30 ............................................... CGAAAGTTTTGAAATACCTTCTATTCTTTC 2395 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 27 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : AAGAGAAGAAAAGAAAGGAAGAAAAGAATTGAAGATGAATACAATAGAGAGACAAAGGAGTGTTTACTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGCG # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //