Array 1 1589320-1587090 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021704.1 Lactobacillus johnsonii strain UMNLJ22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1589319 29 100.0 32 ............................. CTAAATTCAAAGCTAGGATCACTTAAAGTTAA 1589258 29 100.0 32 ............................. AGATTATCTGCGTTAGAAGATCAGAAAAAGGA 1589197 29 100.0 32 ............................. AATTAGCTTCAACAGCAGGATCGCCACCACCA 1589136 29 100.0 33 ............................. CATCATCTGAACTCGTACTAATAAATTTGATCA 1589074 29 100.0 32 ............................. AAATGCCTTTGATGGACTTACATAGGTAAATT 1589013 29 100.0 32 ............................. ATCAACGCTATTCCTTTTGATTTCTAGAGAAT 1588952 29 100.0 32 ............................. ATTTTTTCTTTTTTGTTTGTGTCGCACTGCCA 1588891 29 100.0 32 ............................. TATTCTTCTCCTTATTATTAATTATTAAAATA 1588830 29 100.0 32 ............................. TAGTTTTGGATACTTTATATCTACTCTTTATA 1588769 29 100.0 32 ............................. TTAAATGATAGTTATGGTGAGGCTTTTGGTGG 1588708 29 96.6 32 ............................C CAACTCCTAAGACTTGGACAGATGTTCAAGGA 1588647 29 100.0 32 ............................. ATCCTTATCAGGATTTTTTATAGGTGTAGTTT 1588586 29 96.6 32 ............................C AGCCCAGAAACTCGATTCACGTTTTGCATTTG 1588525 29 100.0 33 ............................. GAAACAAGCTCAAGCTATTGCAGATACAGTAGA 1588463 29 100.0 32 ............................. GAATTTGATTTTGTTAAGTTGTGTAGACAAAA 1588402 29 100.0 32 ............................. AGAAAACGTGAACAAACTTATTAAGACTTTAA 1588341 29 100.0 32 ............................. TAAGAGAAGTAAAGAAGTAGGAGGTAAGTAGA 1588280 29 100.0 32 ............................. TTCATCTGGGTCTAAGCGGAATAATGGTAATT 1588219 29 100.0 35 ............................. CAAGCAGAGGCTGAATACGGAATTGGTGGTTTAGT 1588155 29 100.0 32 ............................. GGAACTGATGAACTCTACTTTATAAGGTAATT 1588094 29 96.6 32 ............................C AGAAAAACCAATTCACACTATAGACCAACTTC 1588033 29 100.0 32 ............................. AATATCTGATAGTTCTTCCTGATCAGCACGAT 1587972 29 100.0 32 ............................. AAGCGACTTACGAAGTTGAATGCTGAAAAAGA 1587911 29 100.0 32 ............................. TGCATGTTCAAAGTAGGTCTGCGTCTTAGCTG 1587850 29 100.0 32 ............................. GAACGATCAGCGAATTGATATGCTGATGTGTT 1587789 29 100.0 32 ............................. AAAAGAGACGTTGCCTGGCAATACAGTACGTC 1587728 29 96.6 32 ............................C TTGTGCCTGATTTAGATCTTGGAGACATGACT 1587667 29 100.0 32 ............................. TAAAACATCTTTTCTGAAATTTAAAAGTTCTA 1587606 29 96.6 32 ............................C AAGAATAGTATTTGGGAACAATGGAATAATGA 1587545 29 100.0 32 ............................. GAAAGGCACACGTCCGAAATTATGTTTCAGAG 1587484 29 100.0 32 ............................. AAAATTAACGCTGTTAAAAAAGAAGGCAAAAG 1587423 29 100.0 32 ............................. ATCCTGAAATACAGTAACAATTCCTGAAAAAG 1587362 29 100.0 32 ............................. ATACACCTTGAAAACTACCGTTCAAGTATAAG 1587301 29 100.0 32 ............................. GAATGGCTTGAAGGGCAATATTCGTAAAGCCA 1587240 29 100.0 32 ............................. GAACACAATAAAGCGAACTCTTATCCTAGAGT 1587179 29 100.0 32 ............................. ATACCTTGTCATACAGTATGTTTGCGTTTTAT 1587118 29 89.7 0 .....................C..C.T.. | ========== ====== ====== ====== ============================= =================================== ================== 37 29 99.3 32 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : AAGAATGGAAAAGTTGATGTATTTTATAAATTAATTAGGGATGTAAACTGTATTCCGGCCGATGTAAGTGAATTAACAGGTTTGAATATGAAGATATTAAAATCGAAAGGAAGTAATTTAATCGAAGTTTTAAAAATGCTAAAAGACTTTCTTGGAGATCGAATTTTATTAGGTTACAATTTAACATTTGATATTAGTTTTTTGGATATAGCCTATAAAAGAAATAAGATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCGATAATTAAAAAGAATAATAAATTTCTTGATAATTATAAGTTGAGTACAGTATTGTCTGAATATAAAATTGAAAATCAAAATCCACATCATGCAGATTTTGATGCAAAATGTACGTATCAATTGGCCTTGAAGTTGATTAATGAGGGAAAATTAAAGCTTTAAAGTTTGGTAAAAGTAATGTATTTGGACGATTGCATCTTTTTAAAATGCTGCTATCATAGGATTCTTTTAGT # Right flank : GATGCCCCCAAGTATGAAGATTTTGCAGCGCCTTGGTGTTGGCAAAATTACTAACTCGTATTATCCAGTAAATAAAAAATGCCACATCATTCAAAACATACTATATCTATACAATCCTATGTTAATCAGTTGAATGACTTGATAGTTCATATTAGTTGATTTATATAAAAAATATCAAGAGAGAAAAAATATGACACCATCAATTGACTAAAGGCCAATAGGATTTGCTACAATAAATGAAGGGACAAGTGAACGTAGTTTATTAGAAAGAAGAACAATGGCACTATGCTAAAAAAGCGATTCACGAGTCTACTATGAAAGTAGGAGATAGTTAGGTGGACGCGCATAGTAGTCAGATAGGTGTGGATGCAAATATCGCCTTGCTTGTCTTAAAGAAAACGATACTCAAACGAGTGTCGTTTTTATTTTTTGGTTTTTTCTCAAGGATAGGACTTAAATATTTAATAAAGATAATTCAAATCATCATCCCTAAATACATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1601280-1599422 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021704.1 Lactobacillus johnsonii strain UMNLJ22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1601279 28 100.0 33 ............................ TTACTGGTTGTGATACAGGTCTTCCATCAACAT 1601218 28 100.0 33 ............................ TACGATTATCAGCACTTCTTAAAGGATCTTTTT 1601157 28 100.0 33 ............................ CCAATTAAAGTTGAAGAACACGAATAATGTATA 1601096 28 100.0 34 ............................ ATACGATCCAGTAGGGTTGTCAGAAATTCTTTTG 1601034 28 100.0 33 ............................ TATTGGAGACGATTATATTTATTCCGATACAGA 1600973 28 100.0 33 ............................ TCTCTAAACGTTGAGACAAGTTAAAAGCTGGGA 1600912 28 100.0 33 ............................ CAAACAAGAAACAAGCGAAACTTTACCAAATAA 1600851 28 100.0 33 ............................ TTTGACAAGTACGGTGAAATTGCATTCGATGAG 1600790 28 100.0 33 ............................ CATGCCTTTAGCGTGTAAATATTCTGCCTCTTT 1600729 28 100.0 33 ............................ TAAAAAAGTCCTTTCCATGCGTACTAGAAAAGA 1600668 28 100.0 33 ............................ CATACATTGCGTTGGCTCTATGAATGTCTCCAA 1600607 28 100.0 33 ............................ TTATCGTCAGAAAGTCTCTTGATTCTCTTGGTA 1600546 28 100.0 33 ............................ TATCTGTCAGCATCCATACAGTGGTCATGCTCT 1600485 28 100.0 33 ............................ TGATGCGGTAGTAAGCGAGGTGATGTGGGTTGA 1600424 28 100.0 33 ............................ TTACTACATTACCAGCAGGGTCAGTGGTTAAGT 1600363 28 100.0 33 ............................ TTTGTGGCAAATAGGTCTTGTAAAGCTTTGAGC 1600302 28 100.0 33 ............................ TATTTAAGTTATCAAGAGCAGTGCGTAATACAC 1600241 28 100.0 33 ............................ CCCGTTTGGACTGCTTCCAATCGTTGAAATCAA 1600180 28 100.0 33 ............................ TTCACGTATCTCTTCATCTTTCTCAGCATTCAA 1600119 28 100.0 33 ............................ TAATAATTAGTGTGCTTGTCACAGTACCTTTTA 1600058 28 100.0 33 ............................ TGTCGTTGACGTTGGTACTGAAATTTTTGATAC 1599997 28 100.0 33 ............................ TTCTTCAAAGCTGCATTAAATGATAATTGTTGT 1599936 28 100.0 33 ............................ TAATTATATAAACAATTTTTATTTTTTTATTTG 1599875 28 100.0 33 ............................ TAAGTCTACTGGCTTTTGCGTTGGGTGAACATT 1599814 28 96.4 33 ..............A............. TAGTGCAGCGTTGTTCTGTTGGATCAGCAAGAA 1599753 28 100.0 31 ............................ TAATACGAGAAACATTAATACTAGTAAAGAA 1599694 28 96.4 33 ..............A............. CAAGCAAGAAACAAGCCAAACTATATCAGATAA T,T [1599688,1599691] 1599631 28 89.3 34 ..AT..........A............. CCAATCGAGAGAAACTTAGAAGATTAGGAATTTA 1599569 28 89.3 33 ..AT..........A............. TAATCGTTTTCTATATTTACCAGATGTCACTCC 1599508 28 85.7 32 ..AT..........A......G...... TATTCCTCTAACTTGGCTGATGAAGTAGCCAA 1599448 27 71.4 0 ...T.T........A.A.A.T..A.-.. | ========== ====== ====== ====== ============================ ================================== ================== 31 28 97.7 33 GTGATCTCCACGTATGTGGAGATGATCC # Left flank : TCATCAAATTTTTTTCCTTATTTTTGATTATTGTAGGTGGAATTATTTCTATTATTGGAATTCCTATAGCAAAGTTGCTATTTTTACTAGTATCACGTCAGAGAGAATATTTAGCGGATATTGGTTCAGTTGATTTGACACGTGAACCAAGTGGCTTAATTTCTGCATTATCTAAACTTGAAAAGCTAGAAGAAGGAGAGAGTACTCCACAAATTGTCTCGCAAGATTTAACCCTACAACATTTGTATTTTAATTTCCCGAGTGCTCATAGTTGGATTAGCCGCCTTTTCTCCGATCATCCACCTTTGGATAAAAGAATTGAGCGTTTAGAAAATAGTAATCAGATAAAATAAGATAAGTATGACCAAATATCATGAGATGGTATTTAGTCTTTGGTTTGGCTAAGGTGTGGTGCAGCATTCGATTTTTTGTTGATAGAAACTGATTAAAAATGATATTATTCTAACTAGAGAACGGCATCACAGCAAGGATCTTTTAGT # Right flank : TAGGATATTAGCAAAAATAATTTATATTTGAGTGCTTTTTATCAAAATGACGCGATAAGTAGTAGTCATATGGTTTACTGGCCATAAAGATCATGAGAAGAGTTAAAAATTAATCACTCTATAAGTGACCTTTTTGATTTTTAATTAGAGTACTTACTATATTGTGTAAAACAAAATTATCGAAATGGTAAAGGAAGAAAATCAACTGTATTATTGGCCCATTAAACTTATTAAGAGGAAGCTACGATTAGAACTATATAACGTTGATGCTAAAGTAATTAAGCTAGGCCCTTTTGGGAAAAGTAGTGTACGATAATTCTGAATTTAAAAATTGTATAGTGCAAAAATCAAGCCTTTAATCTCTGTTCCGAAAAGAATGTCGAACCTAATTCAGCGAACTTAAAAGTTTTATCTCATTCATTAAGCGCTCTGGTAGCGCTTTTTGTTTTGTAATGGACTTATCGCTACTGATAGATAATCTAAAAAAAGTTAGTTACATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCTCCACGTATGTGGAGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 1606479-1605926 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021704.1 Lactobacillus johnsonii strain UMNLJ22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1606478 36 100.0 30 .................................... AAATACTTGTGTGCCAAATGTGCGCCAACT 1606412 36 100.0 31 .................................... TCTACCAGCCGCTTAATGCTACATTCAAGCA 1606345 36 100.0 30 .................................... CAATTCTTCCAAAAATTAAAACTAGAGAAA 1606279 36 100.0 30 .................................... ATACATTCCCAATTCTGAATGCTGGCGAAA 1606213 36 100.0 30 .................................... TCGTGCAAGTATTCAAGCTAACTATGATGG 1606147 36 100.0 30 .................................... CAATCAAGTTACAAATGTCATGAATACGGC 1606081 36 100.0 30 .................................... AGAGCTATTGTTGCTCCGGAAGATGATAAT 1606015 36 83.3 19 ..........................A.A..GC.GG GCTCAAGACCAAGTAACTA Deletion [1605961] 1605960 35 72.2 0 ......AC.A.............-..TA....CTCT | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 95.1 29 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : CTAAAAATATTTTAGATAAATATATACCTCTTATAATAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCGTTATTTTTAGAAGATTTACCGCTAGAACTTGATTTTAGTGAAGATTTAAAGAAGTTTCTAAAATTAGAAAATTTGCATTTAGATTCTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCCATCAAACATGTAATTTGAAGACTGTGCCAGTTGTCTGTAATGTCGCTCATTATTTAGATAGAACACAGTTAAACATGTTGAACAATTTACTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTAAGGATGTTCTGGTTTATCCGAAAGATGCTGATTACTTCTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATCATTAAAAGATAATTATAAATTATCG # Right flank : TTATAAAAATCATTAGTATTAATTAAAAATATTAATGGCTTTTTGCTTTATTGAATTTGGAGATCTTATCTAAATTACCATTTTCTTTTGCTTCTAAGTAATTAAAATATTCTTCAGAGAACTTACTGTCTGTTAGCCAGACCATGTTATCGTTCCTTTTGGTTTTATTTTTGGTCAAAATACACACCTTCAATAATTTAACTATTATTAATTAAAATTTCTGGTTTTAAAAGGACAATAGAACAGAAAAAATGAGAAATCTAAGATTTAAAAAGGATGATTTTCTATTCATTAGAACAACATATCCTAGTTTATTTATTAAATTTAAGAATAGTTATGAAGAAAATGGAATTGTTAATGTACCTATGCAAAATGAAAGGGATTATGATTATTACTTTGATATAGTTGGGGATTATATAGCTACCTCATTGAATGAAGCGTGGGAATTAAATGAGGACGGTCTAAGACTTGAGGCTGCGTGGGATTATGCAGACTGGTCG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //