Array 1 33963-36088 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRDG01000026.1 Aggregatibacter actinomycetemcomitans strain HK_929 NODE_26_length_36240_cov_64.2384, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================= ================== 33963 28 100.0 32 ............................ TACAATCAATGGATAAGTTGGAAATTTGTAAA 34023 28 100.0 32 ............................ TAAGCCCAAAATCACATGGAAACTAACATGAT 34083 28 100.0 32 ............................ AACCTATCCATTGATTGTAGGTTTGAAGTTCA 34143 28 100.0 32 ............................ AATTGATATAGGGACTATGGTTGAAAATTTAA 34203 28 100.0 32 ............................ AACGTGCATATGGATTAATGGCAGACCAAATA 34263 28 100.0 32 ............................ AATGTCACCTTTAATAAAAGATTCAATTACAG 34323 28 100.0 32 ............................ TAATTCAGACCGGGCTGAAATTATGTTGAATT 34383 28 100.0 32 ............................ ATCGAAATGTAAACCATAATTTTCTTCGACAT 34443 28 100.0 32 ............................ ACCAAAATCACAGTCGGAAGCAGATTTTGCAT 34503 28 100.0 32 ............................ ATTGAACTTGCTTATGAAATGAGTAAAACAAA 34563 28 100.0 32 ............................ ATAAGGAAAAACAATATGAAAAAATTTATTTA 34623 28 100.0 32 ............................ TACTGTTGCAAAAAAAATGTAGTTTTCAACAG 34683 28 100.0 32 ............................ TACAAAACAAGGTCGATTTTAACAACCCCTAA 34743 28 100.0 32 ............................ ATTGATATTGACAACTGGTGTGATAAAAAATG 34803 28 100.0 32 ............................ TATAATGCTGTGCGAGAAATTGTAGAAACCGG 34863 28 100.0 32 ............................ TAACAGAAATAAGAAAAAAGGTGAAAGAATTA 34923 28 100.0 32 ............................ TCTCGGAAAACAGTGTGTGCGGTAATTTTTGC 34983 28 100.0 32 ............................ AATGTCACCTTTAATAAAAGATTCAATTACAG 35043 28 100.0 89 ............................ TACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 35160 28 60.7 32 NNNNNNNNNNN................. AATGTCACCTTTAATAAAAGATTCAATTACAG 35220 28 100.0 32 ............................ TACAATGTATCTGGGACCGGTTTAAATAATTA 35280 28 100.0 32 ............................ TATTGGGAATAATATGGCTGCGCCGGTTATTA 35340 28 100.0 32 ............................ TCCTCATAAGCTTTGCGTCGCTCTGCTGCGCC 35400 28 100.0 32 ............................ TGAAAAATACGGTAATGCTAAAGAAGATTTAA 35460 28 100.0 32 ............................ TGCAAACGCTTATTATGATTAAGAAACAAAAC 35520 28 100.0 32 ............................ TTGTTTGAGTTTCCTGTTTCGTTGTGATTCAT 35580 28 100.0 32 ............................ GCAAGCGTCTATATGACAAGGAACGAATAAGA 35640 28 100.0 32 ............................ TCGATGGTTTACTTATAAGCAAATTAAAGCAC 35700 28 100.0 32 ............................ ACTAAGAAAAGCGATGGCAAATATTATTGGAA 35760 28 100.0 32 ............................ ATTTCCAGAATTCATCCATGAAAATGATTAAA 35820 28 100.0 33 ............................ ATGAAAATGATTAAACGACGACCATCTAATAAT 35881 28 100.0 32 ............................ ATAAGCCCCATTCAAAAACGCCTGTTTTTCTT 35941 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTATTCTGG 36001 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 36061 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================================================================= ================== 35 28 98.8 34 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAAATCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : ATACGCGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTTATAATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //