Array 1 42900-44209 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSUT01000029.1 Escherichia coli strain 67 GCID_CRE_0138_NODE_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42900 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 42961 29 100.0 32 ............................. CTATCAGTAACAACCTGGTAAATATCGGTTTT 43022 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 43083 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 43144 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 43205 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 43266 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 43327 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 43388 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 43449 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 43510 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 43571 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 43632 29 100.0 32 ............................. TTTGTTTTGATGATTTATCAGTATATGAATTG 43693 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 43754 29 96.6 32 A............................ GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 43815 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 43876 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 43937 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 43998 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 44059 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 44120 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 44181 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10508-9686 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSUT01000043.1 Escherichia coli strain 67 GCID_CRE_0138_NODE_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10507 29 100.0 32 ............................. TCGGCTCGTAGAAATGCAGATTCGCCGGATTA 10446 29 100.0 32 ............................. ATAAAACAACAGGTGAGTTGGGTTTTGAGTAT 10385 29 100.0 32 ............................. TGGCTCTGTTTTTGCGACAAGCGCAAGGTATC 10324 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 10263 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 10202 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 10141 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 10080 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 10019 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 9958 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 9897 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 9836 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 9775 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 9714 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //