Array 1 2963278-2960868 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038591.1 Salmonella enterica subsp. enterica serovar Senftenberg strain SA20061017 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2963277 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 2963216 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 2963155 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 2963094 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 2963033 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 2962972 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 2962911 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 2962850 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 2962789 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 2962728 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 2962667 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 2962606 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 2962545 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 2962484 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 2962423 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 2962362 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 2962301 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 2962240 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 2962179 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 2962118 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 2962057 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 2961996 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 2961935 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 2961874 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 2961813 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 2961752 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 2961690 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 2961629 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 2961568 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 2961507 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 2961446 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 2961385 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 2961324 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 2961263 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 2961202 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 2961141 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 2961080 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 2961019 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 2960958 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 2960897 29 100.0 0 ............................. | A [2960870] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2982821-2979823 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038591.1 Salmonella enterica subsp. enterica serovar Senftenberg strain SA20061017 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 2982820 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 2982759 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 2982698 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 2982637 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 2982576 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 2982515 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 2982454 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 2982393 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 2982332 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 2982271 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 2982210 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 2982149 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 2982088 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 2982027 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 2981966 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 2981905 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 2981844 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 2981783 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 2981722 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 2981661 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 2981600 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 2981497 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 2981436 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 2981375 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 2981314 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 2981253 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 2981192 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 2981131 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 2981070 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 2981009 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 2980948 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 2980887 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 2980826 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 2980765 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 2980704 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 2980643 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 2980582 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 2980521 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 2980460 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 2980399 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 2980338 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 2980277 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 2980216 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 2980155 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 2980094 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 2980033 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 2979972 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 2979911 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 2979850 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 49 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //