Array 1 2500244-2500406 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHB01000001.1 Caldicellulosiruptor bescii strain RKCB125 Ga0154046_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2500244 30 100.0 37 .............................. ACGTAAAAAATAAGGAGTATGTAAGGGGTTTTTTGCA 2500311 30 100.0 36 .............................. TAATTTTGATATTTTTCATAGTTAACACTTATCAGA 2500377 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 37 GTTTTTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : TTCGAATTGGAAAAGCGAAGACAAACAGGTGAGTGAAATTCTTTTGCAATTCTCATAACATCATGCATAAGTAAATGCACTTTTTCTCACTCTCCTTAACAGACTGGAAATACAAAAGACATAGTAAATTTTAATATGAGATTTTGATAACTTTAAGGTCAAAAATTATGCGAATTTCATTTATGAACATGGAAAATTAGAATTTTCATTACATTAGTTAAATGATATTGTTTGTAATTCAGTTTATATTTTCTTTTTTGTTATGATGTTATGTTTAATTTTTGTATTTTGTATTTACTTTTTCCTATACTTTTTTACTTTTGTATTTACCAATTGCTGTCGACCTGCAATTTCCCCAAAAACCCCCGGGGATCGACAGCAAAAGGTAATTTCTGGTATGTGTTGATTTTCAAGAGCTTGTGGGGTATAATAGAAACAATCTATAGTTGCTTGAAAACATAACCATTTATTCCTTGCGACGTTTTTCAAAAACCTCCACG # Right flank : CAAATTAATATAAATATGAAAATCAAATAAAAGTAAAAAATGGAGGTGTTGACATTATGAAGATTAAATTAAACAAAAAGTCAATAATATCATTGGCAGTGGTGGTGACATTTATTATAGTAACTTTATTAAGTCCTGTATTTTATAATTGTAGCCAAAAGTCAAGCGTTAAGCAGGATATTACCAGCCAGCAACCTACAGATAGTAATACCCAAACAGAAAAATCTACTACTATAACAGATAAATTGTTCAACTGGATGAACATATTTAAAGCATATGCAGATAATACAAACAGTGACAGTGATGGCAATATAGATAATGAGATAGTTAATGATGCACCATATTTAGTTCCAGTATGGCAGCCAGGGGAGATTAACCCAGTAATATACCAGAAGAACGGAAAATTGTATAGGTTAAATGATGTTTCTCCAGAAACTTTAGCTAGGTATTGCAGGATATTGTATGAGTTAGAGGTAAAAGATGTAAAAGAAAAGTATGTT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 2515201-2518721 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHB01000001.1 Caldicellulosiruptor bescii strain RKCB125 Ga0154046_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2515201 30 100.0 37 .............................. TCAATCTCCAAAACCTTTATATACTTAAAATCATAAA 2515268 30 100.0 37 .............................. TCTTTACCATATGATAAGACTTTCCGCTTCCAGGTTT 2515335 30 100.0 36 .............................. TTTATGATTTGTGTTTTTATTTCGAACTATGAGGAA 2515401 30 100.0 37 .............................. ATAAAAGCAATTAGTTTGTAACTAAGGTCATCTTTGA 2515468 30 100.0 35 .............................. CAGCTTCAATCTCAAGTTTGTCTTGTTCATAATTG 2515533 30 100.0 36 .............................. CTGCTTGGTTGCTTCAAGCTCTAAAACTTTGAGCTC 2515599 30 100.0 37 .............................. TATGCATTATTTATGACAGAAATTTAGATAACGAAGG 2515666 30 100.0 36 .............................. CAATATCTCGTATCTTCTCACTTGCCTTGTCTGTTG 2515732 30 100.0 38 .............................. TATCTTGCCTTAGTAACAATTGCCTTCTTTTGGTTCGT 2515800 30 100.0 37 .............................. ACTTTATTATCGTTCACAAGGTAGATAGATTTGCTCG 2515867 30 100.0 36 .............................. GTGTACACATCTTTACCTTTTTTCAGATTATATACT 2515933 30 100.0 37 .............................. ACTTCTCGATTATTTTTGAAAATAACTTTTCCTGTAT 2516000 30 100.0 36 .............................. ATGAACCTAGCATTCTTACAACTAAAAAACATAAAT 2516066 30 100.0 36 .............................. ATTTTTCGACTTTGTTTGCATCGGTAAAGGATACAA 2516132 30 100.0 36 .............................. TTCTTTTTAGGTTTTGTTGATTGTTTTGAAATTTTA 2516198 30 100.0 38 .............................. AAATTAATAGATGTAGAAGGTGAACCTTTCAAATATGA 2516266 30 100.0 38 .............................. TTGTGTCTCATTCATTCTATCACTTCCTTATCCAACCA 2516334 30 100.0 37 .............................. ACTCTTTCTCTTCTCTTTCTCTCTCTTGCATCATCAC 2516401 30 100.0 37 .............................. CACGATAAGAAAAATGACGTAAGCAAATATTGTGCTG 2516468 30 100.0 36 .............................. TAATTTCCTCCTTTCTAAATTTTAATCCCTAAATGG 2516534 30 100.0 36 .............................. ACAACTTTGAAGAAGCTCCACAGACCACGCAGAACG 2516600 30 100.0 35 .............................. CTTAATGAGTTCGTTTTGCTTACGGATGGTTTCCA 2516665 30 100.0 36 .............................. AGTGTTTGGCTATCAGCTGTGTTAGTTTGGTATGGT 2516731 30 100.0 36 .............................. AAATTTATTGCTGATGCATTTAGTTCTTTAGGAAGT 2516797 30 100.0 36 .............................. AAATTTTGAGTGAAATCTTTAGTGAAAGTGATTTGA 2516863 30 100.0 36 .............................. TCATCTGCAACATGTTGTGCGCAGTTTCAATGAAAT 2516929 30 100.0 39 .............................. TATATATAACTTTGATATTTGTTATTTTTAGACTTTTTG 2516998 30 100.0 35 .............................. TCTTTTCCAAATCCACCGTCCCATCCTGTGGCACA 2517063 30 100.0 36 .............................. ATTGTATCATAGCTACATTTGTGTAAACACCTAAAG 2517129 30 100.0 36 .............................. ATTGTATCATAGCTACATTTGTGTAAACACCTAAAG 2517195 30 100.0 35 .............................. CCCACTATCTTATCGTAGTAAGTCACAATAGCCGT 2517260 30 100.0 36 .............................. ATGTAACCACTGATTCTAAACGTACTACTTAAAACT 2517326 30 100.0 38 .............................. TTTCATAAAACCTCCTATGATTCTTAATAATAGTCTTA 2517394 30 100.0 36 .............................. TTTTTTCATTTTTCCATATCTCTGTCCAATATTCCC 2517460 30 100.0 37 .............................. AGATATAAAGATTTACTTTTGCTGTTATAAAATCATT 2517527 30 100.0 35 .............................. ATATCTCTTATCATAGACTTACAATCATCATAATT 2517592 30 100.0 36 .............................. CAAACTCTATTACTCTTTGTTCCAATTCTTCAGCCC 2517658 30 100.0 36 .............................. ATAGCTCAGGTTTGTATAATACATCACCTGATTCAG 2517724 30 100.0 38 .............................. AGATATACAAGCTTATTCTTGCCGTTATAAAATTATTC 2517792 30 96.7 35 .............................T ATGAGAGTAACGCTATTAGAATGGTAATAAAGTGG 2517857 30 96.7 36 ...........C.................. GGTACAACAGCAAAAAATCCTCTTTATATGGCAAAT 2517923 30 96.7 37 ...........C.................. AGGCTATCACAAGCCTTATCACCAGCGCCAATATAAA 2517990 30 96.7 38 ...........C.................. TTTGAATTTGACACAAGCAGTAACAGGAAGTGTAAATT 2518058 30 96.7 36 ...........C.................. AAATTATTAAAGTTCTTCAAACAAAAGAAGAAATTG 2518124 30 96.7 36 ...........C.................. ATGCCTTTAAATTGTAACCTCTCAATCCTTCTACAA 2518190 30 96.7 37 ...........C.................. GTAAAAATGGAGATACAATAAATGGAATACTTAATAT 2518257 30 96.7 35 ...........C.................. AATTATAGTGGTAGTATACCTAATACTTTTCGTGT 2518322 30 96.7 35 ...........C.................. ATAGAATATGTCTGCTTGGTGTATCGCAGGATTTA 2518387 30 100.0 38 .............................. TTTGTTCCAGCATTGTAAACTCCACTAGCTGGTGAATA 2518455 30 100.0 36 .............................. AAGAAAAGCGAGGCTGTGAGGTTTTTAATGCAGAAT 2518521 30 100.0 36 .............................. TTACATTTTCTCTACCAAACTTCTCTGTTATTCTTT 2518587 30 96.7 37 A............................. CTGGTAACCTGACTGTTGAATACTTGTCAAAAAGATT 2518654 30 86.7 8 ...........C...............GGA TGAAGTGG Deletion [2518692] 2518692 30 70.0 0 .C....TTA..G..T...T..A.......T | ========== ====== ====== ====== ============================== ======================================= ================== 54 30 98.6 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : TAAATAGGCATCATTTCCAGATGCATCACCAATTAAAATATCACCAATCTCAACTATTTCCTCTATCAATAGCCTCTCACCTCACTTTTATGTTAATTATACCAATTTTATTTTCAAGATACAACCGAATTTTGAACTTGCAATCCTCGTTACTTAGTACACTTTTTAATTTTACATACCATCATTTAATTTTTAAGGTCAAATTTTATGCGAAGTTAATTAGCTTTATATGTCATTTTTTTCATTTTATATTATTTTTGCTTGTGCAAAAATTGACATTTTTAATTATGTACTTTGTGATTTGTGGCGTATTATGACTTTTGTATTTACCAATTGCTGTCGACCTGCAGTACCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : TAATATCTTGAAATTTGTTGATTTTCTTTTAGAACGGGTTTATTTGTAGCTCTCTTCTTGGGAACGATAAGTAAAGAATTTTCAAAAATACTAAATTAAGTTACAATTTTGGTAGCTTATATATCCTCCAAAGAAAGATTAAGATGAATTGGGTAAATATGGGATAAGAAGAATAAAATTATTGTCAACTTAGCCTGTTGAAGCAGGGGGTGCCAATGATTTTAACCATTTTGTAAGATGCATTGAGCCCCCTTAATCAATCATTCAAACAGCAGGAAGGACAAGCAGAAAAGGTAAATAATGAAAGAACAAAGTAACAGTTGTTGAAGTTGTATCTAAATATAGGGGAAGAATTTTTATAAAAAAGGTTTATGATAGTGTATCGACTGATTGATGTAACCAAAAAATTTTAAGTCAATTCCAATTTGGTTGATGAAAGCAAGTTTGAGGAGCTAATTCTTGAGCATTACAGAAAGCTTGCATGACGTGCTGTTTTTGAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 2539707-2542510 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHB01000001.1 Caldicellulosiruptor bescii strain RKCB125 Ga0154046_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2539707 30 100.0 37 .............................. AGGCTTTCTAAAATTTCTTCAACGTCTTTTTTGCTTG 2539774 30 100.0 35 .............................. AAAAAGCTGAGGAAAGTGATTTTCTATCAGGACGA 2539839 30 100.0 36 .............................. TTGCTAAAAATGTCGCAAAAACCGTTATACCAGCTG 2539905 29 96.7 35 ...........-.................. TGCCTTATTGATGAATTATCTATGATAGATTTAAA 2539969 30 100.0 36 .............................. AGGGAATTGTAAAGAAGGAAAATACCAGCTGTGATG 2540035 30 100.0 35 .............................. CAATATTTTCATAGCTTTCATACACATAATTTTCA 2540100 30 100.0 36 .............................. ATAATTTTCATTTGTACATAAATGGTGTTGAAGCAA 2540166 30 100.0 35 .............................. AATCCTTTTAACCTCATGGGTCGTGTAGGGAGTAG 2540231 30 100.0 35 .............................. TCTTAAGACCACTTTTTGTTTTAACAAGTTTAACA 2540296 30 100.0 35 .............................. TTAACCTCTTGTCTCCATCAGGAACTGGAGCAAGA 2540361 30 100.0 36 .............................. CGGGGATGTTTTTACCTGCCCAATTTTCGATGACTA 2540427 30 100.0 36 .............................. ATTTCACAGATGATGCAGTTAGGCGTTCTTACAATA 2540493 30 100.0 37 .............................. GCTGGCTGGGTTCTGTTAGTTTTTTTCAGTGTCGCCC 2540560 30 100.0 36 .............................. GTCTTTTATCACTTCTCGTTTCACATCCCCTACCAA 2540626 30 100.0 36 .............................. AATACATCATCAAATCCTCAAATTCTTGATCGTATG 2540692 30 100.0 35 .............................. TTGTACACTTCAGGGTCTTTTGGGACAGTTCCTAA 2540757 30 100.0 33 .............................. GCAAAAAATCAAGTACTTTTTTTATTTTTTAAA 2540820 30 100.0 36 .............................. GCATTAATTCTTTTTCTGTTTCAGCTAACATAGCCG 2540886 30 100.0 37 .............................. ATTTTTTGAATGAGATAATGCAGAAGACGAAAGGAGA 2540953 30 100.0 36 .............................. AAGAAATAGAGAGAAAAAGAAAAGAAGAACAACAAA 2541019 30 100.0 37 .............................. TTTGCTTTGCTTATCCCTTTAGCTTTGCTGCTTACTA 2541086 30 100.0 36 .............................. CTATTTCAGTAGTTGCTAATGGTTTGTCAACGTCTT 2541152 30 100.0 36 .............................. TTTTACAATTACTATTATACTCGAAATTTTTATTTT 2541218 30 100.0 36 .............................. TAACCGGCTCTCCTGTTACCCTTATAACACTTGTTC 2541284 30 100.0 36 .............................. GTGCGGTATCTGGAAAAGATTTTGTAATTCAAGATT 2541350 30 100.0 36 .............................. AACGTTTTAAAAAGGATGGCTGAAGGTGAACGTGTT 2541416 30 100.0 38 .............................. TGGAGAAATCAGGTAAACTGTCCATAACGTCCTCAATG 2541484 30 100.0 36 .............................. GCATTAATTCTTTTTCTGTTTCAGCTAACATAGCCG 2541550 30 100.0 37 .............................. ATTTTTTGAATGAGATAATGCAGAAGACGAAAGGAGA 2541617 30 100.0 35 .............................. AATATAGCAGAGCTATACTTTGTAGTGTTTCTTCA C [2541646] 2541683 30 96.7 35 .............................C TTTTCATCTATGATGTCCATCAACTTTTCAACAGT 2541748 30 96.7 36 .............................C ACAATGTACATTAATCTGTCAGGGAATATTGCTTTT 2541814 30 100.0 36 .............................. AAGAAATAGAGAGAAAAAGAAAAGAAGAACAACAAA 2541880 30 100.0 36 .............................. ATATTTGACCTTCTTACCACCTCAATCACCCTCTTA 2541946 30 100.0 36 .............................. TAACCGGCTCTCCTGTTACCCTTATAACACTTGTTC 2542012 30 100.0 36 .............................. GTGCGGTATCTGGAAAAGATTTTGTAATTCAAGATT 2542078 30 100.0 36 .............................. TGTGAAATATTCTGTTTTGTTTCTTCTTCAAATATA 2542144 30 96.7 36 .............................C CATCGAGTAATGCGGACTGCAACTTCTCATAATCAT 2542210 30 96.7 38 .............................C CACACCTCACCTTCTTTTAACTGCTTTTCAATTTCCTG 2542278 30 96.7 38 .............................C ACATAAGTAAAAACGGTAAAACTAAGTAGAACAAAAAG 2542346 30 100.0 37 .............................. AAGAGCTTGAAGATTATATAAAACAAAAAAACACAAT 2542413 30 96.7 37 .............................C TGACAATTAAAGCATATCAAAATGCCTCAGTAGCATA 2542480 30 90.0 0 ...............G.........A...G | T [2542507] ========== ====== ====== ====== ============================== ====================================== ================== 43 30 99.2 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAT # Left flank : TTTTTATAGAATCTTTCCAGTATCCATATATCTGAGAGAGCTTGGACATGGGCAATCATACCTTTCAATTTTGATTTATCTTTAAAATAGTTTATACCCCCATTGAGTGTGATAGTTATTTACATAAAATACTTTTATATAATACCTTTCGACATATATTGACATAATCCTCTATTTTAATGCAATTTTCAGAAAAATTGATTTTTTATTAGTTTTATCTTTGATTTTTAAATAATAATTGTGATTATTTTGCATTATTGTTATTACATTTTATTCCTTTTCAGCTTCTGTATTTAGTTTTATGAAATAAATTATGACTTTTGTATTTACCAATTGCTGTCGACCTGCAGTACCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : GGAGTCTGAGTGTTGGAAGTAGAAGAGAAAAGGAGACCTTCTGTTGGGGATTTAAATTGCTACCAACAGGGTGGTAATATGGTAGTGCAAGTGCATGGTTTGTATGCTTTTACTTTGGAAATTAGGGAAATAAAAGAGTTTTTGCTTTAAGAATTGAATAAAAAGAAGTGTCTTCTTTTAGAAAACTGTGTTAAGGAAAGTTTCTCACCAATTTTATAAAAAAAGGGGCTTTTCATAGCCCCTTTAATCCTTGTCCGTGAACAAGTATAATCTTTTCAGGTTCTAAAATTCTTAATGTGCGTAAAATTTCAAAGTAGTTAGAATGAGCAGAAAGAGGAATATCAAAATAGTGAACCTCAAAATTCTTTATTACCTTTATCATCTCATGAATATACTGCTGTTCTTCTATATATCCGCTTTTGATAAACCCAAATGCACTGCCGTTCAAAAGTTGAACATACTTTACTGCAATGCTGTTTGGCTGAAGCATACCAGAGCTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 2568285-2569108 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHB01000001.1 Caldicellulosiruptor bescii strain RKCB125 Ga0154046_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2568285 30 100.0 36 .............................. CGATGAAGGATTGTAGGATTTTTGCAATATATAAAC 2568351 30 100.0 35 .............................. TATAATAGTTGCTCGCATAGGAAACTCTATACATT 2568416 30 100.0 36 .............................. AAAGTTTATCTATTTCTTCTTGCGTTTTATTTGTTT 2568482 30 100.0 37 .............................. AAATATTTAGCGCTTTGTCTTTAAATTGAGAATATAA 2568549 30 100.0 37 .............................. GTCCCTCACAACGATGAAACAATCAAAAGAATCTATT 2568616 30 100.0 36 .............................. TAAACAAATTAATGTAGCTAAATTTGTCGCCTTGTA 2568682 30 100.0 36 .............................. TCCAGTGGGATGGAAAGAGATGAAATAATGTCAAAA 2568748 30 100.0 37 .............................. AAAATAATCAAAGATTCTTTTACCCCACCTACACATC 2568815 30 96.7 36 .............................T CAATATCGAGAATAATCTTTCTTCCTTCAGTAGTTT 2568881 30 100.0 36 .............................. GATAATGAGGGATTGAAAGTTGGTGAGCTTGTGAAA 2568947 30 100.0 36 .............................. TTCCTTGTATTCGCTACAGGCAAAGTGATTTTACCA 2569013 30 100.0 36 .............................. TCATAATTTAATCTTCTGCGTGTTTGTCTGCGCAAA 2569079 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.7 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : CTTCTCTTCTATTTTTTGAGCTGGCAATTTTTTAGTTTCTGTTGTAAGTTTAATCATCTCAAAGTTTATTTTATAACTTTTTTTGGCAGTTGAAAAGTTCAAAAAATATGCGAACTTTTAATAATGATAGCAATTATTTAGTCAGTGTGCAACCTGTATAGTCATTATATTATCGTTCAAAATAAAAAGATATGTGTCAAAAATTTAATAAAACAAAATAATACTTTTACATTCATTTTGTCCTTAGATTTACTTTTATGTTTGTTTATATTCTTCTATATGGCTCCATGTGTTTAGAAAAATAAGACTTAAATTAGCTTTTGTATTTACCAATTCCTGTCGACCTGCAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGACAAATTTTGGCATGTATTGACTTGTGGGCTTTTGAGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : CGTTATTATGAAGATTTTGACACTTTAGAGCAAGAACTTGATACAAATATACTTGACAATTTTGAACTTGATGAGGCGGCACCATTTTGATGGTATATGAAGTTACTTATAACAATTCAAGACTTGTGTTTGAAGGAAAAGAAATTAATTATTTCAAGATTTTAGAGGCTTTAGATAAGCTTAGAGATTTGCGTGACTATATTGAACTGTTTTACACTGAGTATTCTGGTCTTCCTCTTACCTCTCTTCCATATGATGTTTTACTTGATATTTTTACAAACTATCTTGACTTTATAGGTGTACAAATAAAGGTTATAGGTAGGTAAACTTTTTTATGGGTGACAAGGCAAAAATAATTGAGCTCATGAAAGCTATTAATAAAGCTAAAGGTGGAAATGTGATAGGTTTTTTGGTAAGATAGCACCAAAATCTATTCCGGTAATTCCAACTCAATCACTTATTCTGAACAAACAGCTAGGTATTGGTGGATTTCCAGGTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 5 2577735-2580518 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHB01000001.1 Caldicellulosiruptor bescii strain RKCB125 Ga0154046_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2577735 30 100.0 36 .............................. ACATAAAAAACGTGCGATTTCCTTTTTGCCTGTTTC 2577801 30 100.0 33 .............................. TAGATAAACAGTTTTATTCACAAATGGGGTATG 2577864 30 100.0 34 .............................. TGGTTTGACACGTGTAAGGTTTTCATGGGTGCCG 2577928 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 2577994 30 100.0 36 .............................. AATCAGCTCCTTCTTGAGCATCATACATCACCAAAA 2578060 30 100.0 37 .............................. CTCTTCCTGAAAGCCCAGTTAGCTTGCTCAAGATTTG 2578127 30 100.0 36 .............................. CTCTAAATTGTCCACGCAAAACATCTATTTCCTCGC 2578193 30 100.0 33 .............................. AAATTTATATAAAAATATTTTCTGCACATTTTT 2578256 30 100.0 37 .............................. TCGACCACTACCCAGCGAGAGTTTTTTGGAACAGCCA 2578323 30 100.0 35 .............................. CCGCATGATTGGCAGTGGATAGCAGAGCTTGACGA 2578388 30 100.0 37 .............................. ACAGCTTTTGCCAAATCACGATAAGTAAGTTGTCTTG 2578455 30 100.0 36 .............................. AAACTCTCAGCCTCTTTACACAAGTTATATAGCCTT 2578521 30 100.0 36 .............................. TCATATAAATACCCCCCTATCTTATTTCTTATCTTG 2578587 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 2578653 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 2578719 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 2578785 30 100.0 37 .............................. TGGAGGGAAGAGTGATGGTTTATCAAATCAAAATTGA 2578852 30 100.0 35 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 2578917 30 100.0 35 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 2578982 30 100.0 35 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 2579047 30 100.0 35 .............................. ACAAAATTTACAGCTATGCTCAAGAAATGATGAGC 2579112 30 100.0 35 .............................. CCATTAACATGGAGATATGCTTCCTTCTGTGCAAG 2579177 30 100.0 33 .............................. TAGATAAACAGTTTTATTCACAAATGGGGTATG 2579240 30 100.0 34 .............................. TGGTTTGACACGTGTAAGGTTTTCATGGGTGCCG 2579304 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 2579370 30 100.0 36 .............................. AATCAGCTCCTTCTTGAGCATCATACATCACCAAAA 2579436 30 100.0 37 .............................. CTCTTCCTGAAAGCCCAGTTAGCTTGCTCAAGATTTG 2579503 30 100.0 36 .............................. CTCTAAATTGTCCACGCAAAACATCTATTTCCTCGC 2579569 30 100.0 33 .............................. AAATTTATATAAAAATATTTTCTGCACATTTTT 2579632 30 100.0 37 .............................. TCGACCACTACCCAGCGAGAGTTTTTTGGAACAGCCA 2579699 30 100.0 35 .............................. CCGCATGATTGGCAGTGGATAGCAGAGCTTGACGA 2579764 30 100.0 37 .............................. ACAGCTTTTGCCAAATCACGATAAGTAAGTTGTCTTG 2579831 30 100.0 36 .............................. AAACTCTCAGCCTCTTTACACAAGTTATATAGCCTT 2579897 30 100.0 36 .............................. TCATATAAATACCCCCCTATCTTATTTCTTATCTTG 2579963 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 2580029 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 2580095 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 2580161 30 100.0 37 .............................. TGGAGGGAAGAGTGATGGTTTATCAAATCAAAATTGA 2580228 30 100.0 36 .............................. ATTAACGCATCGTCGCTATTCAGTTTGTCCTCTCTT 2580294 30 100.0 36 .............................. ATGTGATAGCAAGGAATATACGATTTAAAAGAGGTG 2580360 30 100.0 35 .............................. TTGTGTTCTGGGTCATATAATCCATATTTTGCAGC 2580425 30 100.0 34 .............................. TTGCTTTCGTTTTCTCGCTCACAGTATTCAATTG 2580489 30 96.7 0 G............................. | ========== ====== ====== ====== ============================== ===================================== ================== 43 30 99.9 36 ATTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : CATTGGATTTTTATACATTGAAAATCCTTCTTTTATTCTGTTTATAAACCAATCACCATAAAATGCTGGAATATCTGTTCTTCTGCTTGCACTAATAATCATCTTACTGTAAACTTCCTTCTTTGATATAGGATATTCAAAAAGATTTGAAAAACATTGCTTTTATATTTTTATTTTACCATATATTTGCTCAGGACAGTATAAAATTATTTCATCAAATATTGCTATTTATTTTGATTTTTCTATATTATGTTATTAATGTTTATACATTAATTGCCATATAATGTTTTGTGCTTTGCTAATAAAGAGAATTTTAGATTTTGTATTTACCAATTGCTGTCGACCTGCAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGACAAATTTTGGCATGTATTGACTTGTGGGCTTTTGAGGTGTATAATAGAAATAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTATGAGATTTCTCAAATTATCTACGT # Right flank : CCCTCGATGTTTTTTCGTTTTATTTTGATCTAATTCTGTGCAAAATTCGGGTATAATTCGATTGGCTGTTGGTTTTGAGGTTTGGGTTTTGTAAGAAGTTTCCATTTGTAGATGTTTGACTTAAGTAGGAAGTTGTTTAGAGATTGGTTTAAAAATTGAGATACTTTAGAGTGTTTACTTAATTTTACCGGTATTTTGGAAATATAGTGGAAAGGTATGTTTGAAAATTTATAAGAAATTAGTGACAATGGGGTGGAAAATTATGATAAAACTTAATGAGTATGGGAATATTATTTGTTCAAGGGAAAATGGAGAAGTAGTAAGAGAAAAAATATTAAAGGAAATAAAAAATGGTAATATAGTTGTAATTAATTTTGAAGGTGTTGAAATGATTAATCATTCTTTTGCAGATGAAGCATTTGGGAAATTACTTTATGATTTATCAGAAGATGTCCTTAGAAATCAAATAAAATTTGTTAATGCTAATGATGACATAAAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 6 2584596-2584954 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHB01000001.1 Caldicellulosiruptor bescii strain RKCB125 Ga0154046_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2584596 29 100.0 37 ............................. ATTTCTTTACCGTCTTCAGAAGTGTAAACTACCTCAA 2584662 29 100.0 37 ............................. ATTTCTTTACCGTCTTCAGAAGTGTAAACTACCTCAA 2584728 29 100.0 36 ............................. TTTGCAACCTCTCTTGTCAAAAATACCTGACCGAGA 2584793 29 100.0 37 ............................. TCCCTCTGAACAAAAACATCAATATAAAAACCATCGA 2584859 29 100.0 37 ............................. AGCAGTTGCTAAAAATAGCAAATAAGCGCAATGAAAA 2584925 29 96.6 0 ............................G | G [2584951] ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 37 TTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : GGCAATTTTTTCATTCAATCTAAATTAAACGAAACAAAGGTATATAGTGGTTTAGATTTAACCAGAGAGCAAATAAACACAGGTTTAAAAGATGTTGCTGTTAAATTAAAAGATGCTACAGCGATAAAATTTCCATTTTTAGAATTGGCAAAAAACGATGTAAAACTTCCAGATGGAATAGTACCAGACGCAACAGTAAGTATAGAGAGAATTTTAAAAGAAATAATAGAAGGTAGAGGTAATATAGAGAATAATTTTGTATACAAATTAAACTTAAATTCTTATGTATTTGACTGGCCATGGTTTAAAGTAATAGACAGCGATGGCAGATTAGTAAATGCAACAACAGCAAGAGATCATGAAAAGATGTTATATTATGCACAAGAAGCGTTTAATCCAAATTCTAGATAAAGAATGTTCATGATTTATAGATTTGATAAGAATGGAAATTTAAATTTACTTGATAGTTATGATAAGGTTGCTTCAAATGTTTTATTTAG # Right flank : GGTTGGGGTCTGAGTGAAAATTTTTTGACCTTTGAAATTCCTTTAACGGAGCATTATGCTGCTTTTGAATTTTTACTCAAAGGCTAAAATAATTCTTTTAAAAGATTTTGCCAAGTGCAGTTTGGCAGACAAAAAAGACAACAAAAATATTTTTTTGGTTTTATTTTATTTCGTGAGATGATATAATCTTTTTAGAAACTATGTTGTATATTTTTTTATTTTCATGAAATCGCTTTCCTATCTAAAATATTAAAAGTTAAGGTGATTGAGTATGTCGTTAAGAATGCCTTATTTAATTAGCGACGGTATGGTGCTTCAAAGAAACAAACAAATAAATATCTGGGGCTGGGCTGAACCATGCAAGATGGTAACAGTAAATTTCCTGGGAAAGTCATACACGGCAGTAGCTGACCACTTGGGAAAATGGAAAGTTACTTTGCCACCCATGGATGCCGGCGGTCCATACTTTATGGAAATCAAATGCCAACATCATGCTGTTA # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 7 2786542-2795354 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHB01000001.1 Caldicellulosiruptor bescii strain RKCB125 Ga0154046_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2786542 29 100.0 36 ............................. TAAAGAAAGAGGGAAAGTAAATGGCTTTGATAGATT 2786607 29 100.0 36 ............................. CGCATTAAGCCACTGCAAGGTAGAATTTGACCAATT 2786672 29 100.0 36 ............................. TGTATTTGGACTTTAAAATTGTCATTTGCAATATCA 2786737 29 100.0 36 ............................. GTATGATACAAATGGTAATGAGATTAGATTGTATCT 2786802 29 100.0 35 ............................. CAATATCCATATTTGCGAGGTGTAGATGGTGTCGA 2786866 29 100.0 36 ............................. ACACTTAAAAAACTTAATGTAGCATTCATTGGTGGA 2786931 29 100.0 37 ............................. TTTTATTTTCCTTGTTCGTGTATTAAAATCATATTCA 2786997 29 100.0 37 ............................. ATTGAAAGCAAACCACAGATTGTGAATGCTGACCAAT 2787063 29 100.0 36 ............................. TAAAATTTCTATATCGCTAAATATAACAAGCATATA 2787128 29 100.0 37 ............................. ACGCTTCTAACGCAACTGTTTATGACGTTCATAGGTG 2787194 29 100.0 37 ............................. TCAGTTAATCATTTTAAGCGCTTGGAGCCTTTTTGAT 2787260 29 100.0 37 ............................. TTGAGAACTTTTATATTAACTCTATCAACTAACCCAG 2787326 29 100.0 37 ............................. TTAAACCAACTAAGTATGCTAAATCAAAAGGCAGCGA 2787392 29 100.0 35 ............................. ACAATCTTGTTGGAATATTTTCAAACAGAGCAACT 2787456 29 100.0 37 ............................. AAGATGATGTAGCACCATATGTCGCACTTGGCTTTAG 2787522 29 100.0 37 ............................. TGAAAACAAGAAAGATTTTAATATCAAGCCACTGGAC 2787588 29 100.0 36 ............................. TCAACAATTTTATAGCCAAGTGGTGGAATTCCACCA 2787653 29 100.0 36 ............................. CTATGATTATTATAACAAAATGTTCTGTTCCTTAAA 2787718 29 100.0 37 ............................. CGTGTATCCCAAGTTTAACGCACATCTCATTCACCTT 2787784 29 100.0 36 ............................. TTGATAATATATTTGACTTTGCTCATCACTTTACAG 2787849 29 100.0 37 ............................. GCACCAAACAAGCTCAAAATAGGTATTGCCTGCCTTA 2787915 29 100.0 36 ............................. AGTGATTTCTTTATTGAGTTCCTTTTCTATTTCTGC 2787980 29 100.0 37 ............................. ACAAAAATGGTAGAAAACAACAGAAAGTATAAATTGT 2788046 29 100.0 36 ............................. CTTTGCAAAGATAAAAAATGCTGGTTGTGTGGAGGT 2788111 29 100.0 37 ............................. CCTTTCTTTTTTTTTCTAACAGACCAGCCCTACTCGG 2788177 29 100.0 38 ............................. GTTGTCAATGAAAATTGGTGCTGAGAAGTTGTAATATT 2788244 29 100.0 36 ............................. GATTTCTGATGGAAATCAGGATATTAGCCTCTGGTA 2788309 29 100.0 36 ............................. TGTCTGTTTCAAGGCGTCTTATAAGCTTATCTTCTG 2788374 29 100.0 37 ............................. CTTTTTCTGTGCAGCATTGTAAGCCTGCATTACAATT 2788440 29 100.0 37 ............................. GCTAAACCACCAGCTAATAATGTTGCTGTTGCCACAT 2788506 29 100.0 38 ............................. GTGCATGTGCATGAGCCGATTCAGAAGGGTTAATCCCT 2788573 29 100.0 36 ............................. TGAATTTCATGTATCATCAAATAATGTCTCAAATAA 2788638 29 100.0 39 ............................. CTGGAAGCACAAGGGATTATAAAATACGAAATTGATAAT 2788706 29 100.0 37 ............................. ATTCGCATTGATGAGATTAACAGAACAATGATAGCAG 2788772 29 100.0 37 ............................. GTCGAATACTCTAAATCTTCAACTGTATTATAAAACC 2788838 29 100.0 37 ............................. ATTCGCATTGATGAGATTAACAGAACAATGATAGCAG 2788904 29 100.0 37 ............................. GTCGAATACTCTAAATCTTCAACTGTATTATAAAACC 2788970 29 100.0 33 ............................. CAATTATATGCTTGTTATATTTAGCGATATAGA 2789032 29 100.0 37 ............................. GCTTGAACTATAAACTGTTTTGTCGCTGGTGAAAGTG 2789098 29 100.0 35 ............................. AATAATCAGTAGGGCCCATTATTTTTTCGCCAAAA 2789162 29 100.0 37 ............................. CTCTATTTTTTTATTTTTAGAAGGGGGAGTAGTGATG 2789228 29 100.0 37 ............................. CTTGCTAAAACTGTAGTTTTTTTGCTTGTAGGTGACT 2789294 29 100.0 37 ............................. CAGGTAGGATATTTCCCTTTGTATGCTGCAGGTTATA 2789360 29 100.0 36 ............................. TTAATTCAAGCAGTTTTTTAGAATTCTGTTCAAGCG 2789425 29 100.0 36 ............................. TTTATAGAAAGCGCTATCATATCGATTGCGTGCAAA 2789490 29 100.0 36 ............................. GCAGTCTTTGTCAAAAACTTTTATAAACATCTTCAT 2789555 29 100.0 36 ............................. ACGGCAACTGAAGCAAAAGCAAGATATGATGAGTAT 2789620 29 100.0 37 ............................. TTTTACTGTTTGATAATGTGCAAATATTCTGTATATG 2789686 29 100.0 36 ............................. CGGAAAACAAATTTGTACTTCCAATCATTCTGCGGA 2789751 29 100.0 36 ............................. CACAGATATTGTTGAACTTCTGGGAATTCTTTTGCT 2789816 29 100.0 36 ............................. TCAGGTAAATTCGGAATTGTACCCATATCATAATCC 2789881 29 100.0 36 ............................. GAAATATCCCTAAAACCATGTCAGAACTCTTCATTG 2789946 29 100.0 36 ............................. CAAGAATCTTTATCTGCTCTAGTAGGAAGCTTTGCT 2790011 29 100.0 36 ............................. CAAGAATCTTTATCTGCTCTAGTAGGAAGCTTTGCT 2790076 29 100.0 37 ............................. GCTTTATCCGGGCAACTGGGATACTCAAACGATTGAA 2790142 29 100.0 36 ............................. GCGAAAGTTTTGATTGATAAAGAAGGTACTTTATGG 2790207 29 100.0 37 ............................. TGTTTCAATAATATTCGTTCCTGTCGTATCATAGTAA 2790273 29 100.0 36 ............................. TCTATACCTTCTATTGAAATTAACATATTGTGACCT 2790338 29 100.0 38 ............................. TGGTGGGTGGCATAATGATACTATAGTTACTGTTGAAG 2790405 29 100.0 37 ............................. ATTGCAAAGTGTAACGTTAGTTTAAAAATATGTGAAT 2790471 29 100.0 37 ............................. GGAGGTAAGACAGTTCAAGCTAGAAGACATTCAGGTA 2790537 29 100.0 38 ............................. CTTTTTTCTTGCAATCTTCATATGTTGAGCTTTGGTAA 2790604 29 100.0 38 ............................. CTTTTTTCTTGCAATCTTCATATGTTGAGCTTTGGTAA 2790671 29 100.0 36 ............................. TTCGGACCAGTTGCCGAGCTGGAACGACATAGCAGA 2790736 29 100.0 37 ............................. TAAGTTTTCTTGAATTCATTGCTTCACCACCTTTCTT 2790802 29 100.0 36 ............................. AAACAAAGGAGATTCAGCAACAGATTGAAGTAGTAA 2790867 29 100.0 37 ............................. GTGAAAGGCCGAAACAAACGTCAACGAATTGACCCTG 2790933 29 100.0 36 ............................. CACTTTTGCTAAAACACCGTCAATGGTCAGGTAGCC 2790998 29 100.0 36 ............................. GGTTTTCCCCAGAACAACAAACCGACATTCTTTTCT 2791063 29 100.0 36 ............................. AATATGGGAAGAGGTAGGTACAGAGAAAATAATTAA 2791128 29 100.0 37 ............................. AAAGGTTGGGTATTTACTTGGCTTGCCTTTAACGATA 2791194 29 100.0 36 ............................. TGTGCTTATTCGTCGTCAACCTGATGTGCCTTCTAA 2791259 29 100.0 36 ............................. TTTCTTTTTAGAAATATTAAAAATATGGATTGACTT 2791324 29 100.0 37 ............................. TCAACCCATGGCTGAACCAATCGCTTACCAATAGCAG 2791390 29 100.0 37 ............................. TAGACGCCCAAACATAATAAAGTGCTTCAGGTATTTC 2791456 29 100.0 36 ............................. TATTCTGCCGAGTTCATGTTGTATCACCATCTGCTG 2791521 29 100.0 37 ............................. TTCTTGTTCAGTTGCTACTATTCTTACTACATTACCT 2791587 29 100.0 36 ............................. AAAAAGTTTGCAAGTTTAATTTTAATGTCATCAGGT 2791652 29 100.0 36 ............................. AATATGGAATGGTCAGAGGGTATCAAGAGTATATTA 2791717 29 100.0 36 ............................. TTTTTATACTAAAATTTTGCACAGAAATAGGGCAAA 2791782 29 100.0 37 ............................. GAAATACAGCGCAATAATAACTATATCCTCTGCTTTT 2791848 29 100.0 37 ............................. GATTTCTGATGGAAATCAGGATATTAGCCTCTGGCAG 2791914 29 100.0 37 ............................. TTGAACTTGTATTTTAGATAATAAGTGTCTGTTGCAT 2791980 29 100.0 37 ............................. GCAGGATTCATACTTGGCCGACCTCGCTCAGGTAAAA 2792046 29 100.0 36 ............................. AAAGATATAAAAAAATTTAAAGACAAAGCATACTTC 2792111 29 100.0 37 ............................. TGTTCAACCTACTTTCTTTTGTGAGTATATCTCTATT 2792177 29 100.0 36 ............................. CAGAGCCTGCGGGGGAGGTCTGGAGGGGGAAAGCCT 2792242 29 100.0 35 ............................. TCTTGAGTAGGTCCCATTATCTTTTCCCCAAAATC 2792306 29 100.0 36 ............................. ACCAAAAGTAATTCCTCATATTAATGTGTTTCACTT 2792371 29 100.0 37 ............................. CGAAATCATGAACAGGATAAAAATAATTAATATAGCT 2792437 29 100.0 36 ............................. TTTTTCAATTAATTTATCTTGGTCACCTAATTTATC 2792502 29 100.0 37 ............................. GTCATTTACATTGAACTTTTTCAACCAGTCATTGGTG 2792568 29 100.0 36 ............................. AGGAAAGTAGTTTTGTATGTGCTTCCTGCAGATGCA 2792633 29 100.0 36 ............................. GATCTTATACGATTATAATTGAAAAAAAGTATAATA 2792698 29 100.0 37 ............................. GTACTCTAAATATTCAGCTAATGACATTTCTGTATCA 2792764 29 100.0 36 ............................. AAATGCAGCAAAGCAAGCTGACCTTGACGCCCACAT 2792829 29 100.0 37 ............................. TCTTCATGGAATCATATAAAAAAACAATATGTTGCAA 2792895 29 100.0 36 ............................. GAAATCAAGAAAAAGCCAGCTTCTTTAATACAGCAG 2792960 29 100.0 36 ............................. GCCGACCCAGATGGATATGGGCATCTGAATATGGCA 2793025 29 100.0 36 ............................. TCTTTGTCTTTGTCTTGAATCAAAAGTTTTTTGATA 2793090 29 100.0 37 ............................. GCAAAAACGCGAGCGGGTAATGTATTTGATACAGATT 2793156 29 100.0 37 ............................. TACAGACCCAGTTAGTTACTTTAAAAAATTTGGCAAG 2793222 29 100.0 36 ............................. AAGATTAGTTTCTATGTTCTGTTTGTTCAGCTTTCA 2793287 29 96.6 37 .....................T....... CACACTGAAAAAGAAATCAATACATAAAGATATAAAT 2793353 29 100.0 36 ............................. GTTGATGGTGTAACGTCAGTGACAAATTTGCAAGCG 2793418 29 100.0 36 ............................. AAAGTGAAGGCGGTTCAAAAAGTATAACACAATTCA 2793483 29 100.0 37 ............................. ATTGAACGCAGAGGTGAAGGTGATGACTGGTATTATG 2793549 29 100.0 37 ............................. AAGATTCAACTTCTACTAACACAAAATGCTCATAAAA 2793615 29 100.0 36 ............................. ACTACCGCCCGCTGACACTGGAGACTGGGGTGATAA 2793680 29 100.0 37 ............................. TCTAAACCACCCGAACTAATTTGCTCTGAATAGCTAA 2793746 29 100.0 36 ............................. ATATACTGCTAAATAATAAAACCTTACGTACAACAG 2793811 29 100.0 36 ............................. GTTGACGACAAAGGAAATATCAAAGTTGGTACAACT 2793876 29 100.0 38 ............................. GATATTTTTGTTTGTTCTAGTTCATAACTATACCCATC 2793943 29 100.0 36 ............................. TTTGAAAAGGAAGAAGGTGATAAAGGAGAAAAAACA 2794008 29 100.0 37 ............................. AAAAGTTGTTGTTACACAAGAATTAGGCAGACAATAC 2794074 29 100.0 36 ............................. TCGAGTTTGTTGTTGACGACGACGGCACAGGGGAAA 2794139 29 100.0 39 ............................. CTGGTAAGTATTAAAAGGGTAAGTCGTCATCGTTGCTTG 2794207 29 100.0 36 ............................. CAGGATGGTATGGTCGATTTGGAAAAGATTAAAGAC 2794272 29 100.0 37 ............................. TTGTTTTGTTGCTTGTAAAGGCGTTGTAGAAATTCTG 2794338 29 100.0 36 ............................. GCGGTTTTTTTACTATAAACTCTTGAAAAATTTTTA 2794403 29 100.0 38 ............................. TTTTTAGTTGTTCGTTGGTGGTTTTATTTACACACACA 2794470 29 100.0 36 ............................. ACGTTGCCTGATGGGTCATACAAACTAATTGTGACT 2794535 29 100.0 38 ............................. TTCTCTTTGCTACCCCATTGATAGTGCGGGCATTTCTC 2794602 29 100.0 37 ............................. TTCTTTCATTACTTCATCAAGAGAAGAATGCATTGAA 2794668 29 100.0 36 ............................. TATTCTTTCAAGCTCCGCCTGTACGTCCGTTACCCA 2794733 29 100.0 37 ............................. TCAAGTTTTAAAAGCTGAGATTTAACAGAATCATTCA 2794799 29 100.0 37 ............................. ACAATGGTATATACAATATAAATCCGAATGCTTGCAT 2794865 29 100.0 37 ............................. AGGAGTAGGGATGTTATGTTTGGATAAGGGGTGTAGA 2794931 29 100.0 37 ............................. CATAGTACCGTCTGATGCACCAGATTTGCCACATGTT 2794997 29 100.0 38 ............................. AGGAATAATCTGTATTATTTCATTCCAGTCAACAAACG 2795064 29 100.0 37 ............................. TTACATTGTCAAAAGTGGGTAAGCCACCCTTGGTAAG 2795130 29 100.0 35 ............................. GTTAGATTTTTAATTGTTACCCAATCTCCTGCTGA 2795194 29 100.0 37 ............................. GCCTTTCATTACAAGAAGGGAATTTGGTCTATGAATA 2795260 29 100.0 37 ............................. CGTAAAGGTTGCGGTCTTTGATTGCGTGAAGCTCATC 2795326 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 135 29 100.0 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : TATTTGTAATAGTCACATATGATGTCAATGAAAAAAGAGTCAACAAGGTAAGAAAGATTTTGAAAAAATACTTCACATGGGTTCAAAACTCAGTATTCGAAGGTGAAATCACATTGGGCAAGCTTGAAAAATGCAAACGTGAACTTTTATCGGTTATAGAGAAGAATGAAGATTCAGTGTATTTTTATGAGATGGAATATAAACTTGTGTGCAATAAAAAGGTTTTAGGACAAGAAAAGAACTATGATTCTATTATAATTTGAAGATTTTGAAATGAATCCATTGATGAATAAGTATTTCCGAAACTAACCATTTTGCAGCGAGGCTTATAACTATTTTAAAGTTTCTGTCTTCTTTTCCTACAAGGCTTTCAAGACTCTTTACCATCTCCTTACAAAACCCAACCATCCCCTCGCTGCAATTTATTTTTGTTGTGAAAAATTTGTTAATAGGTTATAATATAGATGTAGCATAGAAAAGATGATATTTATTATTAATGG # Right flank : CCTTCAACTGCATTTTCAATATAACCTTTTATCACAGTTTTATCTGTTAGCACGAAAATAGATTGCATTCAAAAATGATTTTGAACATAAACAATAGAAGATTCTCAATCATTTAATAAGAAAAAAAGACAATAACAAACTAACCGATGCTAAAAAGGCATCAGCTGGAATTATTATAAATTTAATCAAGATTTAAACTGATTGGGGGCTTATAACTTCTAAACCAAACTTTTTTGCTTCGCTGATAAGTCGATTAAAACGAATTATCTCTTGTTTCTTTCGAACTTCACTAAAAACTTTTTCATCATAGTCAGTGTCATTCTTAAGCATATTATAGATTATAACCAGTAATTTTCTAGCAAGAGCTACTATTGCTTTCTTTGCCCCTCGGCGCTGCTTTACTTTCCAATACCACGTAGCAAGGTATGAATCTCTTACGCGAGTTAGACTCCATGCAACTTCACACAGTATCCTCTTGATGTAGGTATTACCCTTTGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 8 2799198-2800471 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHB01000001.1 Caldicellulosiruptor bescii strain RKCB125 Ga0154046_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2799198 29 75.9 38 T.GAC..T.AC.................. GTCATCTTTCATTTCAAACATTGAACGTTTTTTGTGAC 2799265 29 100.0 38 ............................. GTCATCTTTCATTTCAAACATTGAACGTTTTTTGTGAC 2799332 29 100.0 35 ............................. GTCCCAATCTTTTGTTATATTGTAAGTTGGTATAG 2799396 29 100.0 37 ............................. TTTAAAATCATTATGATATGCTAAGGCATAGTAGATG 2799462 29 100.0 38 ............................. GACATCTTTGTTAAAACTGTGGTAGACAGCGTTCGCAA 2799529 29 100.0 37 ............................. TGAGGATTATGCGAGAAAAGTTGCTAAAGCAAGTTTG 2799595 29 100.0 37 ............................. AAAAACATACTATACAATCAATAAGAATTTTTATCAT 2799661 29 100.0 36 ............................. CTTAAAGGGCTTGAAAACTTAACTGTTGCTCAGCAG 2799726 29 100.0 37 ............................. AACATATCTTGCATACGCTTTTTTAGATTCACATCTT 2799792 29 100.0 36 ............................. TTGAAGCTGTACAAAGAGAAATGAAAAGAAGAGCTC 2799857 29 100.0 36 ............................. CTTCACAAGACATGTATCAAAATATTTACAACCTTG 2799922 29 100.0 36 ............................. AATTCAAAAATGGATTATAGCAAAAATCAGCTTCAA 2799987 29 100.0 36 ............................. GGCAAGAAGAATAAGGCAGGCAATACCTGTTTTGAG 2800052 29 100.0 36 ............................. CGGGATTAAGATAGGCGTTCAAGCAAACACAACAGG 2800117 29 100.0 37 ............................. ATGAAAGAGCTGAAAGCAGATTTAATGAGCAAGAAAG 2800183 29 100.0 36 ............................. GGCTCTGGTTTAAATTGAGAAATAAATCCATTGCCT 2800248 29 100.0 36 ............................. GGTGAAATATTTAATAATGTGTTAGGATAAGGAACA 2800313 29 96.6 35 .........A................... AGTTTTTATCAAGAATTTTTTCTTTTGTTATGCTG 2800377 29 100.0 38 ............................. TTGAATCTAACGCAGCAACGCCTCCGCTTTTTTGTATA 2800444 28 72.4 0 ..................-.C..TCCTGT | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 97.2 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : TTGTCGGAACACCAGGGGTAGGGAAAACGCATCTAGCCACAGCAATAGGTATAGAGTGTGCAAAACGAAGGTATTCAACATATTTTATACATTTTCAAGAGTTAATAGCCCAGCTAAAGAAAGTATTATTGGAGAACAGATTAGAGTACAGACTTAAGCATTTTTCGAAATACAAAGTTTTAATAATAGATGAGATAGGTTATTTGCCAATAGACAATGATGGAGCAAATTTATTTTTCCAGCTAATATCGAGCAGATATGAGAAGAGCAGTACAATAATAACAACTAATGTTGTATTCTCAGAATGGGGAGAGATATTTGGTGGAGCGACAATAGCAAATGCAATTTTAGATAGGCTACTGCATCATTCTTACGTGATTTTCATAAAAGGTCCTTCATACAGATTGCAGTCAAAAACAGCATATTTTAGCAATACAAACCAGCAAAGTTAAGTTTATTTTTTGTACATTTTTATTTTCGATTTTTTGTTCATTTTGATA # Right flank : TAATGAACGAAAATGAGTGAAAATGAAGTGAAATGAGATTTGAAAAAGAAAAGGTACCTCCTGATAAAATATAGTTAAGTAAGTTCTAGAACTTACGAGAAATCATCACAAAAGGAGGTACCTACCTTGAAGTATACACAAAATGAGAAGATATTACAAGTCACAGAGAAAACATTAGTTGTAGGAGTAGATATAGCAAAGGAAAGGCATGTTGGCAGAGCATTTGATTTTAGAGGAGTGGAGCTTGGCAAGAGAATAGAGTTTGAGAATAGAAAAGAAGGTATGGAAAAATTTTTGGATTGGGCAAATAAGATAATGAAAGCAAATGGCAAAGAGAACGTGATGAGACTTGTCAAGAATTTTGTGTTTCCAATTTATAACGCAAATTGTAGAGTTGGGTTATGTTGTTAATGCATTTTCTAATGCTGGGAACTCCATTTTTCCATTTTGTACGGCGTAAGTTCTCTTCTTGTTAAGTAAATATTAATTTCTAAGACTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //