Array 1 451214-453316 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOO01000078.1 Salmonella enterica strain NGUA-16_S4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 451214 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 451275 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 451336 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 451397 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 451459 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451520 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 451581 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 451642 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 451703 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 451764 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 451825 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 451886 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 451947 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 452008 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 452069 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 452130 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 452191 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 452252 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 452313 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 452374 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 452435 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 452496 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 452557 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 452618 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 452679 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 452740 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 452801 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 452862 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 452923 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 452984 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 453045 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 453106 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 453167 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 453228 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 453289 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 470949-472869 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOO01000078.1 Salmonella enterica strain NGUA-16_S4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 470949 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 471010 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 471071 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 471132 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 471193 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 471254 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCGTGGAAAAAGCGGC 471315 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 471376 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 471437 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 471498 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 471559 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 471620 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 471681 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 471742 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 471803 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 471864 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 471925 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 471986 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 472047 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 472108 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 472169 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGGCCGTACTGATCCC 472230 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 472291 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 472352 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 472413 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 472474 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 472535 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 472596 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 472657 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 472718 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 472779 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 472840 29 100.0 0 ............................. | A [472867] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //