Array 1 2353520-2354403 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022344.1 Chromobacterium vaccinii strain XC0014 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2353520 29 100.0 32 ............................. GTTACGGTGAATGGCGGGACATTTTGCATGGG 2353581 29 100.0 32 ............................. CCGCCGAGCTTCCCGAACATCTTCCCTACCCT 2353642 29 100.0 32 ............................. CACCACGCGTCCGGATTCTGTTTTTTGCCATC 2353703 29 100.0 32 ............................. GATTGATCCATGGGCCGCGTCATTGCAACGCG 2353764 29 100.0 32 ............................. CCGGTTCAGCAGCATGCCGAATTTGGCCTGGC 2353825 29 100.0 32 ............................. GTTTATGCCTGGTACAAGTCAGCAGAGGCTCA 2353886 29 100.0 32 ............................. TCAGATGATCAGCCAGTTCGCTCCGCCGAGCG 2353947 29 100.0 33 ............................. GACACCGGCAACACCGCCGGCGTGAACCTGACC 2354009 29 100.0 32 ............................. GCGGGATAGGCTCCGGCTAGATAGCTGCCGGC 2354070 29 100.0 32 ............................. GAGACCGGCAATGCTAACCCCTGACCAACTCG 2354131 29 100.0 32 ............................. CCGAAAACCTTCCCGCGAGCGGCTTCGTGCGT 2354192 29 100.0 32 ............................. AACTCTATCTGGCCGAAGTCACGCCGTTGGTT 2354253 29 96.6 32 ................C............ TCGTCGGCGGGCGAGGGAAAACCGGCGCGCAC 2354314 29 89.7 32 .....T........C.............A AAGCCTGTGCCGAAAGGTTTCAGGGTTCGAGC 2354375 29 75.9 0 A...........GT...........TTGA | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.5 32 GTGTTCCCCACGTGTGTGGGGATGAACCG # Left flank : GCCAGAATGCGCGCTAGCGTGGTCTTGCCCACGCCGGGCGGGCCCCACAATATCATTGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGATGCTGCTGGCCGATAACCTGATCGAGCGCCTGCGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTGGGCGGGATGGAGCGGAGAAGCAGTATACCAGTTGGGGGCGGGCATGAAAAAAGCGCCAGACAGGCGCTTTTTGCTTGCATGCCATTGGAATGGCGGTAGGCTATGGAGCCTGGAAACCTTGCCGTGCAAGCTCCGTGCTTCGTTTTTCGAAACGATGGCGAAGGGAAGATTTCCTGATGCCGTGTGGCGCTTGGCGGGACGATTTGAGCGGCGGTTTCCGACCAGAAAAATCGGTAGAATTTTGAGGTGGTTTTTTGTCTTTAAAAATCAGCAGTTTGAAAATGGT # Right flank : ACGGGCGCGGGCTGGAATGGTGTCGCGGCGCTGCCAGCCCGGCTGTGTCCGGAAACAAAAAAAGCGCCCCTTGGGGCGCTTTTTCGGCACAACAATCCAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAAGTGGTGCCAACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCGTCGTAGAAGGTAACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGAACCACCACGTCGAACTTGTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2361677-2362010 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022344.1 Chromobacterium vaccinii strain XC0014 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2361677 29 100.0 32 ............................. TCCGCGCACCGGTAGATTTTCGTGCGACACCT 2361738 29 100.0 32 ............................. AAATTCCTGCCTGTTGTCCTGTCCGTGGCTGC 2361799 29 100.0 32 ............................. TGGGATGTTATGGTAATAAACCTGACGGCATT 2361860 29 100.0 32 ............................. GGGTAGGGGGTAAGGATCAGCAGGCTCAGGCT 2361921 29 100.0 32 ............................. GAGGAATACGTCGACAAGATCGGCGCGCCCAA 2361982 29 93.1 0 .........................G.T. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : ACCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCCTGCCGCAGCTGCAATGCGCAGACCGAGCCTTCCGTCCACTGCACGAGCGCTTGGCCACCCAGGCGCTGACCGGCTTCGAGTGGCTGAATGTCGCACATACGCTGCAGCAAACCCGCTTCGCCGACGGCAGCCGCCTCACCGCCAACTTCGCCGCGGAACCTGCCGTCCATGGCAAGCAAACCCTGCCGCCTCAAAGCCTGCTGGCCGAGCTGGCAGGCCAGCCGCCCAGGCTGTTGCGGGTGGTCGATTGCGCGGGCAAGTAATCGGCGGTGATAATGCCAATGTTGTTTTCTGGCCATGGGGCGACGGTTTCCCATGGCTGGTAGACGGCATCGCCAGGTTATTCAATTGATCATTTTTTAGGCTATAAAATCGGTAGATTTTTAGGATGAGTTTTTATTTTTAAAAATCAAAATGTTGAAATTGGT # Right flank : GCTCGGAACGCTGCCGATGGATTCTGCATTCAAGTGTTCCGCACCTAAATGTGGGGATCCATTGCCTGGAGTCTTACCGCTATATCAGTCGTTCAAGAGTTCTCCATGCCGGCAGGGATGCGTTCCAAACTGCCTGCAATGTCGATCGGCGGGTGATTCACATCCGATCGCCGGTTTCGTTCAAGTGGAAATGACGATGCTTTCCGCCCATGCAGAACGAAAGGACTGGCTATGCCCTGGATGACCGACTTGTTCCGTACCGCCAATGACGCCAGAGGTCCGTTTCCTGATCGCCCCTTGTCGCGCGTCACGCTGCCCGGGACGCACGACTCCGGCTGTTATGTGGACCGGGCGGTGAGCAACGCGCTTTCCAAAACCCAAAGCCAGGACATCTACGGCCAGCTGTTGGGCGGCATCCGGTATTTCGATATCCGGCCATGCGTCAAGGATGGGCGCTTGTTCACCTATCACGGCGAGTTTTATACCGGCGGACCGATAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2372368-2373677 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022344.1 Chromobacterium vaccinii strain XC0014 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2372368 29 100.0 32 ............................. GGCTAAAACGCCACTGGAGAAAATCATGCAAT 2372429 29 100.0 32 ............................. CTGCCGGACGGATCGCAGTTCACACGCAAGGC 2372490 29 100.0 32 ............................. CAGGGCGGCCTCAACCAGCAATATGCGCAGTA 2372551 29 100.0 32 ............................. CCCAGGACGCTGACGGCGACGGCGAGGCTCAA 2372612 29 100.0 32 ............................. CGCCGGGCGGCTAGCGCTGCTACAATCAGCGC 2372673 29 100.0 32 ............................. AGCGCGGACAGATCCTGGCCGAGCTGGACAAA 2372734 29 100.0 32 ............................. GTGGTGGATATCGCTCAGCAAGTGACGGGCAC 2372795 29 100.0 32 ............................. TATTAGGAGGACTTACCGTGTATCACTCTCTC 2372856 29 100.0 32 ............................. TGGACAGAGTCTTGATGCCTGTCAGGCCATTC 2372917 29 100.0 32 ............................. ACTGGGTTCGCGGCCAAATGGCAGTGGGAGAC 2372978 29 100.0 32 ............................. AGACGCGTTCCATTGAGGGCGCTGTTGTTGGC 2373039 29 100.0 32 ............................. CCCTTCCCGTAACGCTTCTCCAGATCAGAGCG 2373100 29 100.0 32 ............................. GTGGGCAACCGCAAAGCCATGATGAACAGCCA 2373161 29 100.0 32 ............................. GTGTTCGGCACGGACATGTAAGCGATGACGGT 2373222 29 100.0 32 ............................. ATCGAGGCGGCATCGGCCTGCGGCGCGCTGAA 2373283 29 100.0 32 ............................. CCTTTAAGAGCTTGCGGCCACCTTTTGAACCC 2373344 29 100.0 32 ............................. CCGGTCGGGATTCCTGGCTCGAGCGGCAATAA 2373405 29 100.0 32 ............................. CGCCTGGACGCGTTGGACTGGGTGCGCGTGGA 2373466 29 100.0 32 ............................. TTGCTCCACAGCTTGTGCCGCGGTCATCACGG 2373527 29 100.0 32 ............................. GGCGCGGCCAAACCGTGGCGGTGCTAAACGGC 2373588 29 100.0 32 ............................. ATGCTTGATATAGGCGGTGATCTTCTTGCGGC 2373649 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 CTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCTGGCGGCCTGGACAAGCCTGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGTTGCTGGAAATCCGCGCCGGGGTCTACGTTGGAAACTACAACCGCAAGATCCGCGATTACCTATGGCAGCAGGTGGAGGACGGGTTGGACGATGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTTGGGGCCAACCGCCGCATGCCGGCCGAGTTCGACGGCGCGAAATTGGTGTCTTTTCTGCCGCCATCGGTACCGGAAGAGAGCGGTGAATAGCATGAGGATCGCTTTGTTCCAGAGGGCGATTTGGCTCTTTGAAAATCGGTAGATTTTTAGGTGGCGTTTTTGTTTTGCGAAATCAATTGCTTGCAATTGGT # Right flank : GGATGCCGCTGTCAGCTACGCGCCGATTTTTACCTGTGAACCGCAGTCCCGCCTCCCGCTAAAGACCGCATGCGCGCGCGCTCCACGCATGGAATGGTTTGTCATCCAGGCTTTCCGCTGCTTGCGGCGCTTGGGTGGCGCTTCCTATGCTGCAATGGTTGAAGCTGGAGGAGTCGCCATGCAGCAGTTGAGAACGGGTTTGCTGGTTGCCGCGCTGTTTCTCGCGGTGGCCTTTGTTTCCAGATCGCTGGCCAGTTCCGTCACGGAAACCATGCCGGTCTGGCTGGGCAGCGGGGTGACTTTTTCCGCGCTGCTGATTTCCCCCCGCTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGATGATCTGGGGGATGGCGGCGCATGGCTTGAATCCGGTGGGCGCGGCGGCTTTCGCCAGCATCGAGGCGGTCAGCGGCGCCATGGGCTGCTGGGTGGCAGGCCTGGGGCGCAACGATCCGGACACCCCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //