Array 1 872512-873456 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCNX02000001.1 Caballeronia fortuita isolate LMG 29320, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 872512 28 100.0 33 ............................ CTGCATCTCGATGACGTCGCTCTTGCGTTGTCC 872573 28 100.0 33 ............................ TCGTCTAGAATCCGTCTAAAATTTTTTCATCCA 872634 28 100.0 33 ............................ GCCGACGTCGCGCGGCCGCTATCGCGAGCGGTG 872695 28 100.0 33 ............................ CGTCAGCCAGCGCGCCGCGCCGGCGAATCAGAT 872756 28 100.0 33 ............................ CCTGTGCCAGCGCCGCGCCGGTCGCGCCCGCGA 872817 28 100.0 33 ............................ GTTATATGAAAGTCAATAACCCTGGTTCTTTGA 872878 28 100.0 33 ............................ CGATCGAGAGTTCGTTGTCGGCCGCGTGCGGCC 872939 28 100.0 33 ............................ CCGTGCGATCACGCGCGGGCAGTCGGCGTGATG 873000 28 100.0 33 ............................ CCCAGAGGCGGGCATTGGAAGCGTTCCTCGTTT 873061 28 100.0 33 ............................ CTACGGCTTCGCAAACGTCACCGCCACCGGTGG 873122 28 100.0 33 ............................ CTTGTCGCCAAGGATTTTGCCGATGGCCTGCGC 873183 28 96.4 33 ...........................T CCAGTCAATGCGCGATTCGATGGCGGTCATACA 873244 28 100.0 33 ............................ CGCGCAGAAGGTGCTGCTCGACGCGCTGAAGGG 873305 28 100.0 33 ............................ TGTATTACGGAAATAGAGCGCGATCTACACGAT 873366 28 96.4 35 .........................C.. TCCGGTTTGGCAGAATCAGCGGGCGAACGCGAAAA 873429 28 85.7 0 ...C.....A.C.A.............. | ========== ====== ====== ====== ============================ =================================== ================== 16 28 98.7 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : CGTTGCTGCGGCCGGGGCATGTGAGTCCGCGCGAGATCGCGGATGTGATCGGGATGGCGCCGAAGCTGCCGGATGGATCGGATGCGACCGCGCCGCGTGCTTCCGGTACGCTGAAGGCGCATTACGCGCCGCGCACGCCGCTCGCGCTGCTGCCGTTTTCATCGATCGAGCCGATGCTGGGCGATCGCGAGAGGAAAATTGCGCTGGTGGCGCGGGCATCGAGCGCGGGTGAGTGGGCGCATGCCGCGCATGTTCACTTCGTGGCGGCGCCCGAGGATCCGCTTTCTTACGCGCGGGCGTTGTATGGGTTGTTGCGGGCGCTGGATCGGGCGAACGTGGAGCGGATTCTGATCGAGAAGCTGCCGGAGACGGCGGAGTGGGTTGCGGTGAATGATCGGCTCGGGCGGGCGGCGGCGGCGTTCGAGGGCGGGTTTTTGCGCTGATTTGTGAAAGATGGGTTTCGGGGATTCTGCTTTCCCGTCAAGACGTTATGATGCAGG # Right flank : CTCACCCGTCGCTGTAGCGCGGCTCACAACTCGCTTTCTCTCCGCCCTCGCGGAGTCAAAAAAAAAACCGCCCGGCGATCCCTCCCCGAGCGGTTTCCCCATCCTGACTCAGCCCAAAACCTACTTCCCCAACCCCGACTTCGCGATCGTCTGCTCGGCCGTCTGCGCATAAAGCGCATGCAGATGCGTCGTCGGATGCACGGTATCCGCGTACATATACGTCTGGTCAGCGCCTGCCACCGTCAACGTCTCCGGCGAGCAGAACAGCGACGTCGCGAACGCCTGAGGGTTCGGCTCGCCGAACTTCTGCGCCGCCGCAGCCATCGCCTGCAGATTGCAACCCGTGCCCGTGTTCGACACCGTGAACCCGAACTGCGCGAAATTCGCCGTGATATTGGCAAGCGGCGGAACGATATCCAGGTAAATCACCTTCGACATCAAGCCGCTTTTCGTCAGCGCCGCAGCCAGCGCCTGATTGAAGCCGAGCGATGCCTGCGTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 113643-111696 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCNX02000006.1 Caballeronia fortuita isolate LMG 29320, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================== ================== 113642 28 100.0 33 ............................ CAGTTTGCCTTGCAGCTCAAGCGCAACGTTCTG 113581 28 100.0 33 ............................ CCTTAGTGCTGATGCCTTTGTAGTAGGCCTCGA 113520 28 100.0 33 ............................ GTGGTGAGTGCGGGCATCTACGCCGAGGACCAG 113459 28 100.0 35 ............................ CCCTTGAGAGAAGCTCCAGCTCTTCGGCGTATGCC 113396 28 100.0 33 ............................ GCGATGACAGTACCTACGGTTTTATCCTCTCTA 113335 28 100.0 33 ............................ CGTTCTGCCGATAGGCTTGCCCGGGCGTTATCG 113274 28 100.0 33 ............................ CGGTGACATCGGCCCCGCCGAAGCCCTCGATCA 113213 28 100.0 33 ............................ CTATTTCACGGAGTCAAAAATGGCGTTCAAGAA 113152 28 100.0 33 ............................ CTGCGGCGCGCCCATCTGTCTCGTTGCCTACGG 113091 28 100.0 33 ............................ TTGACGCCATCGCAAAGGAGTCCGGCAAATGAC 113030 28 100.0 33 ............................ CGCCTGACGGACCTTGAGCAGAACCATGCGGGC 112969 28 100.0 33 ............................ CGATTAGCGTCACGCGCTGCCCTAAAATCCCCG 112908 28 100.0 58 ............................ TTCTAGGCTACCTTTTGCGGGTTTACACCAACAGCTTTTCCATCATCACACCTCCAAA 112822 28 96.4 33 .........A.................. CGCATGCCCATGCCGCAGAAAGCTGCAGCGCCG 112761 28 100.0 33 ............................ CAGGATTGGGCGCTCTTTCATGCCGCCACCTCC 112700 28 100.0 33 ............................ GTTTTCCGTATCGCAGCTCGGGAACGGCTTTCC 112639 28 100.0 33 ............................ CCGCATCGTGTTGCGCAGATTGCGACCGGCGGC 112578 28 100.0 33 ............................ CTGCCGATCCTCCCGGCTTTCACGCTCGCGCCG 112517 28 100.0 33 ............................ ATCACTGGGTGGCGGGCGACGGCGCTGATTCCA 112456 28 100.0 33 ............................ CTTAACCAACCCTCTCCCTGCACCATGACTAGG 112395 28 100.0 33 ............................ CTTTGTTTTTCCGGAACGGGAAGACTCGGGCCA 112334 28 100.0 33 ............................ GCACGAAAAGCGCATCGCCGTCGACCACCTGCG 112273 28 100.0 33 ............................ CATGCTCATTCCGAACATCCTCAATGCGGGCGT 112212 28 100.0 33 ............................ AAGTCCGCGTCGCACACATCGAACCGACGAAAG 112151 28 100.0 33 ............................ CTGCGGCGCGAACGTGCCCGCGGCATTTATCCA 112090 28 96.4 33 ...............T............ CGCAATACCAAGTGTAATCAGCGCCGGCGGCTC 112029 28 100.0 33 ............................ CCAATTAAGTTGGGGGCGGCGAATCTGCCAACC 111968 28 100.0 33 ............................ CAGTGCGGGGCCGGCGAACGAGTAGAGGGCGCC 111907 28 100.0 33 ............................ CACGTCGCGAGAGGGAGCGGCGATTCGATATCA 111846 28 92.9 33 ........G........A.......... CCGCTGCTGGCGGCCGAAGATCTGGCGCTCACG 111785 28 100.0 33 ............................ GTCGGGCCACGAATCCACATCATCAAGCAAGCC 111724 28 75.0 0 A..........CCA.......C.T.C.. | C [111700] ========== ====== ====== ====== ============================ ========================================================== ================== 32 28 98.8 34 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : GGCTCATGCGACGTGAGGCGGCGCGCGTGTTTCGCAAGAAGGCCGTCATTCCCGCGATGATCGATCGCGTGAAGCAAGTGTTGCGTCTCGATGAAAAGCTGGAGGACAACGATGGCGCTGGTCGTGGTGGTGACGTCTGACGTCGCGGACCGGTTTCGCGGATTCCTGGCGTCGGTGATGCTCGAAGTGTCGGCGGGTGTGTATGTCGCGCCGCGCATGAACAAGGGCGTGCGTGAAAGGACGTGGTCGGTGCTTGGCCGTTGGCATGGACATGAGCCGCGGGGCAGCGTCGTGATGGTGTGGCGGGATCTGGATGCGGTGGGCGGCATCGGCATCGCGCATCTCGGTGCACCGCCGCGCGAACTTGTCGATGTCGATGGGATGTATGTGGCGCGGCGGATGTTGGCGGGTTAGGGAGGTGTTCTGTTCTTTGAAAATTTGATTTTTGGGATTGGGTCGGGGAAGTGCTTTGGTCTTTGTGGTCAATGGGTTATGGGGTA # Right flank : CTACACACTCGCCACCCGCTCAACCACCCGCGCCCTTTTCCCTCCGGCCACAAAATAAGCGGTCTCCACCCGCCTTAATGCATCCCTACCCCGAATCCGATCCGCAATCTTCTCCGCCAACATGATCGTCGGCGCATTGAGATTACCCGTCGTGATCTGCGGCATGATCGACGCATCCACGACGCGCAGCCCCTCCATCCCATGCACGCGTCCTTCGGCATCGACGACAGCCATATCGTCGTAACCCATCTTGCACGAACACGAAGGGTGATAAGCCGTCTCCGCTTTCGCCCGCACGAACGCATCGAGTTCGGCATCGCTTTGCAGATCATCCGACGGATGCAGCTCGCGCCCGCGATACCGCGCAAGCGCAGGCTGCCGCATGATCTCCCGCGTAATCCGGATGGCATCGCGAAACTCACGCCAGTCGAGCGGATCGGCCATGTAGTTGAAAAGAATGCCGGGATGCGCGTTCGGATCGCGCGACTTGAGCTTCACGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 122754-124180 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCNX02000006.1 Caballeronia fortuita isolate LMG 29320, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 122754 28 100.0 33 ............................ CTGCACGGCGGCCATGACCTTCATGACCTTTCC 122815 28 100.0 33 ............................ CGACCGCGCGGACTTCGAGCGCCTGCTCGCGAT 122876 28 100.0 33 ............................ CGCAGGCGACGGTCATCACCAACCGCGGCTTGA 122937 28 100.0 33 ............................ CTGTTCCTTAAACCGATTGACGACGCCCCGTTA 122998 28 100.0 33 ............................ TCGTGTCTTCGTCGAAGTGCGGCAGACCGATGC 123059 28 96.4 33 ...........T................ CCTTTCCGTTCGCAGCAACGTGTGATTTACGCG 123120 28 100.0 33 ............................ CGCGGCACTCCTTCTGGTCAAGCGTCTGATATA 123181 28 100.0 33 ............................ CGCCCGGCCGAGTCTCGGGCTTGGAGCTTTTCA 123242 28 100.0 33 ............................ TTGCTTCAGCAGCGCCGAAGCCTGTTCTACGGC 123303 28 100.0 33 ............................ CCGACGATGATGGCGGCGATCGCGGAGACAAAC 123364 28 100.0 33 ............................ CAAGTCGTCAAGGCCTCCACCGTCGATGCCGAC 123425 28 100.0 33 ............................ CCCGCGCGATCCGGGCGGACCGATCACGCCCGC 123486 28 100.0 30 ............................ CCCCATCGGCGATTGGGAACTCGACGTGTT 123544 28 100.0 33 ............................ CCGCGTTCTCGCGCACATGATCCTCGCGCCAGC 123605 28 100.0 33 ............................ GTGGTTCAATGAATCAAAGTCAATCCTCACACG 123666 28 100.0 33 ............................ CCAGTCACCCTCGAACGACCTGAGTCGTGTCTG 123727 28 96.4 33 ..A......................... GTACAGGTACTTCTTCCATCGATGACTCTCGGT 123788 28 100.0 33 ............................ CGCTTCGGATAAATCAGCCGCTCGAGCCGCTCG 123849 28 100.0 33 ............................ CTATGGCGCACAGCCTGACAATACTTGGTATCA 123910 28 100.0 33 ............................ TTGCGTGAAGGGTTCGAAGTCGACGAAGCGCAT 123971 28 100.0 33 ............................ CGCGACTCGGATCGTCGCTTATCTGTCGAATCA 124032 28 92.9 33 ......C......A.............. TGGACTGCCGTAGAACGGCCGGTGCTGGCGCGT 124093 28 85.7 33 .A......................AA.A CGCCGAAGCCCCGCGCGAGTGTTGCGGCGTGGT 124154 27 85.7 0 ...........C.........-.CA... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.2 33 GGTTCCTCCGCGTGCGCGGAGATAGGCC # Left flank : AGGCAAGCGCGGCAAGCCGCTCGACATCCTGCTTGCTCAATGCGCGGCCAGCAGTGGAAGCCAGGGCGTCGCCGATGCGTCCGCACTGCGCGATCGCCATGAAACAGGCGGCTACGTCCAGCATGTGGTCACACAGCGGGTGGAAGGGCGAGTGCTCGTCGCCATCACGCAGCCGCTTGCCCCATGCGATGAATGTATCGGTTCTGTTTGCTTCGTTGCTCATACGGCGATGAGTCGCGGGTGATTGACTTCAAGCAGGGGTTTTGCACGCCTGACACTTTATTTGGATTCCTACTTTTTACGCTATGAGATGACGCTGCTCTATACGATTTTGCTGAGTTCTTGCGTGCGGGGACGGCATGGATCGCTTGTCGAATGACGGTCAACAGAGTGCCATGTTTGACAGCCAGCGAGCCGCTAGGGATACTCTCCGCGAAGCGGCTTATTCTGGATATCTAATCGGTCGTTTGTTCTTTAAAATCATTGGTATAACGGGTAGA # Right flank : CGAGGACCGCTCGACGCATCGGGTACTAGGTACCAAAGCCTCCACCATCGCGGCGATACGGCCCCAGCGCAACTCTCACCCCCCAAACCTCTCCCTCGCCGCCTCCACCACCCGCGTCACCGCCTCCACACTCAACCGCGCCGCCACCGCCTTCACATACTCATGATGCCGCGCCTCCAGCGGCGCATCCAGATGCTGCGCATGCAGATACCGAATCAGCGCAATACGCCGGTGCTTCAACGCGATACTCCGATCCAGCAACTTAAGCGCCGCGTCGGCATCGTGCTTCTTGCATGCACGCTCGGAAAGCTGCGCTGCCGCATCGCGCGATGCGTTCATCTCGCGACCACAACCGCGTCTCGCGCATCGACCCGCAAACGCCATGCATCGAAATCCGCGCGACGCCAGTCGAGTTCAAGCCCGAGCCGCTTCGTACCTTCACGAATTTTGGGCTTGTGCAATGTCAACGTAAGCGCGTCCAACGCCGGCCATTCATCGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //