Array 1 1975010-1976685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEVF010000001.1 Enterobacter kobei strain IPM1H4 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1975010 29 100.0 32 ............................. GACGCATCCTTGTTAAACTGCCTGACAATGTT 1975071 29 100.0 32 ............................. CCCTGCGCCTCGATGGTGTCCAGATACGGCGC 1975132 29 100.0 32 ............................. GAAATCAAATTGCTTGCCGGTGTTGTTTAAGA 1975193 29 100.0 32 ............................. TTAATAATCTGAGTGGTCGCATTGATGATGTT 1975254 29 100.0 32 ............................. AATCTAAATCAGCAACAGACAAGCCGAGGGGA 1975315 29 100.0 32 ............................. AATACGCGGGCGATAGCGCGTGATTTCAGCGT 1975376 29 100.0 32 ............................. AGCTGCGCTCTGGCAGCGGTGAACCAGTCATC 1975437 29 100.0 32 ............................. ATATCCGGGGCTATACCCAGTGCCACTTTTTC 1975498 29 100.0 32 ............................. TGCACAGGCTGGCGCGGATTGCGGTTCTTATC 1975559 29 100.0 32 ............................. CATCATCGGGCAAATCGAGACGACTTTGACGT 1975620 29 100.0 32 ............................. CTCTGCACCGTGAGAAAGGATATAGAAGCGCT 1975681 29 100.0 32 ............................. CGTGCTGCAGGGATGCGGCCATCTGCTCCGGG 1975742 29 100.0 32 ............................. TCACCTTTGGTATAACGCTCTTCCCCCTTAGA 1975803 29 100.0 32 ............................. GTAGCAACTGAAATTCGTTGCGTTTTTTCATC 1975864 29 100.0 32 ............................. GCAGCGGATTAACATACACAAAGCCTGATACG 1975925 29 100.0 32 ............................. ACCATATCGATTGACGGCGCGGCAGTCTTACG 1975986 29 96.6 32 .........T................... AAATATCCACGGTAACAGCTCAGTCATCCCAA 1976047 29 100.0 32 ............................. CAGTCGTCATAAGTGCGGCCGAGCCAGTAACC 1976108 29 100.0 32 ............................. CCAGGGCTCTCTTACTTCTGTATCTGGCTAAA 1976169 29 100.0 32 ............................. GCGACCCCGTTAACTTACGTCTGGTTTTATCA 1976230 29 100.0 32 ............................. GAACGTAAATATGCCAGCTTTTGTGTTGTTGG 1976291 29 93.1 32 ............T.............T.. CAAACGATGATCAATTCCTGGCAGTAGCCTAA 1976352 29 96.6 32 ............T................ CGCCATGCACCAACACCAGCTTCGATTTGCTC 1976413 29 96.6 32 ............T................ GCAACAAGAAACTTGCAAAAGAGTTTGGGTTA 1976474 29 100.0 32 ............................. GAAACGGATCAGATTAAAATCGCTATAGTGTC 1976535 29 100.0 32 ............................. ACTGAAGTTAGTGAATATTTGACTGGTTTACA 1976596 29 96.6 32 ............T................ AACGACGGGTTTGCGCCAGCGGCCAGGGACCA 1976657 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GGTTCTTGCTGCCGGAGAGATTGTGCCGCCGCAGCCCGCAGCGGATATGCTACCGCCCGCCATACCGGAGCCGCTGGCGCTCGGAGATGAGGGGCATCGGGGAGGTGGAGGATGAGTATGGTGGTGGTGGTTACTGAAAATGTACCGCCACGTTTGCGTGGCAGGCTGGCGATCTGGCTACTGGAGATTCGCGCTGGGGTATATGTCGGTGATGTTTCGAAACGGATACGTGAAATGATCTGGCAGCAAGTGACGATGCTGGGTGGTGAAGGCAATGTTGCAATGGCCTGGGCCACGAATACCGAGTCTGGTTTTGAGTTCCAGACCTGGGGAGAAAATCGTCGTCTTCCGGTAGATTTGGATGGTCTTCGATTAGTGTCCTTCTTTCCTTTGGCTATTCAATAGTTTACCTGCTCTTTAACATTATGATTTTGTGATTGATATGTTGGTAGGATGTTTTTTCTTTATAGGGTATTGATTTATAAGATTATATTTTTAGT # Right flank : GATTACCGGTCCAGCTATTTCCCCGCCTTCGCCAGCTCCTTTACCAGCGGCAGCATCACTTTCACCACGTCCCGGCTGCGGTGTTCAATGCGCTGCGGCAGGGCGCTATCAATATGCTGCTGGTTATCCAGCATCACGTTATGCCAGCTTGTCCCGTCCGGGAAGGCTTTCGATTTTCCCCGTTGCTGGTAGCCATCTTTTTTCCCCAGCGCCCAGTTGGTTGCTTCCACGTACAGGACCGGAATGCCCGCTTTATCGAACACTTCGCCGTCGTTGCAGCAGCCCGTTCCTCGCGGATAATTTGGATTGCCGCCCGGGTTGCTGGCGGCATACACCCCATGGCTGCGGGCAATGGCGAGCGCCCGGTCACGCGTCAGTTTACGCACGCTACCCGGCGTACTCTGTCCGCTGTTGAAATACAGTTTATCGCCGACAATCAGGTTATCGAGGTTAATTACCAGCAGCGTATTTTTCTTCTCTTCAGCGCTCATGCGTTTAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4185037-4183447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEVF010000001.1 Enterobacter kobei strain IPM1H4 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4185036 28 100.0 32 ............................ TTCGTCTTTAAGGCAAATAACTGGAGCATCAT 4184976 28 100.0 32 ............................ GTCGGAAGGGTTAGCGCCAGCTTTATGGCCGT 4184916 28 100.0 32 ............................ CATGAAAAAGTTAATGTTTACAGAAGGTTGCT 4184856 28 100.0 32 ............................ TTATTGATAGCCATGTCCCAGACCAGCGACGC 4184796 28 100.0 32 ............................ TGGTTTTACCTGCGCCTGTGGCGCCGGTAATG 4184736 28 100.0 32 ............................ ATTCAACGCTGAAGAAGGCACCGCCGATCTCG 4184676 28 100.0 30 ............................ GCTGAGGTGCTACACCGCTGGCGAAGATAA 4184618 28 100.0 32 ............................ GTGAAGTGTCGGACCTCAACGACATCGATGCG 4184558 28 100.0 33 ............................ AAGCTGGCGTGCTGACCGTTCACCAGCAGGAGC 4184497 28 100.0 32 ............................ GCTATGGGATGGAGTCAACGCTCCTGATAATC 4184437 28 100.0 32 ............................ AGAAGTATTTGACTACCTGGCGGTGTGGGCGG 4184377 28 100.0 32 ............................ GAAACCGCGCCGGCAGCTGGTGCAGAAACCGC 4184317 28 100.0 32 ............................ ACATTCTTCAGGTAGTGGCGAATGACAGCATC 4184257 28 100.0 32 ............................ CTGCGGTCATGCCCCAAATAGTTAATGTTGCT 4184197 28 92.9 32 ..G.........A............... TGTTTGTCCAGGTCGTTTAGGTGGTACTGGTC 4184137 28 92.9 32 ..G.........A............... AGCATCGAGAAACCGACGTTAAGCGCGCGCTG 4184077 28 92.9 33 ..G.........A............... TTTCTCGGAGAGCCCTGGTATGACACCACGCTT 4184016 28 92.9 32 ..G.........A............... CTGACCGGGCGTTTACTACAGTGGTGTTCTGG 4183956 28 92.9 32 .......C....A............... ATATCGCCGCGCAGTTCGCCGTTCTGGTCAAA 4183896 28 96.4 33 ............A............... TCTACGCCGTCATAACCGCCCGGGAGCGTCATG 4183835 28 89.3 32 .....A......A....T.......... AACAAAAGAATTCAAAAACGTGGTGACATGTA 4183775 28 92.9 32 .....G......A............... AGAAACCGATAAAGCGATCATTGTTTCTGCAT 4183715 28 96.4 32 ............A............... GAAAACGTCCAGCGTATCTTCGCTGCCGACGA 4183655 28 96.4 32 ............A............... CATAGCGATAGTGTTTTCACCCCTTGTCTTTG 4183595 28 92.9 32 ..........A.A............... TGCGCACGCACTTCAGCCAGGAAAGCGTCGGT 4183535 28 92.9 32 ..G.........A............... CGTCGTGAACGAGCTGCCGCCGGAAGGCGAGA 4183475 28 82.1 0 ..G.....G...A..T....T....... | C [4183450] ========== ====== ====== ====== ============================ ================================= ================== 27 28 96.4 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : AAACGGGCCACGCGTTCGCTTTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGCTCATTAATTCCGGTAACGCGCAAAATGTCCGCTTTCGACATCGCCGTCCACTCATGGATATTGTCGAGGACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAGCCGCATACCTCTGTTTGCAGGTAAACCGGCGTACCGCCAAAGCGCGTTATCAGCAGGTTTCTGCGCGGGGATCCATGTTCTCATGTTGCCTCCCGGATGATGTCATTTGTCATGGTTAAGTATAGTCATTTGTCATAATAAATGAAACGGATGTTTTTTATGCAGGGGGGTATAAGAAGAATGGCGTTCGACCCTAATTTTTAGTGCGTTTGTAAGGCATTGATATTAAATGGGTATTTTGAGGGGGTAAAAAAGAGGGTAAAAGAAGGATTTTTAGCTTTTTTTGTATGAAAATCATAATGGTGGGGGGATATTATTTGA # Right flank : ATAGAGAATAAGGTCTCCCCCTTCTTACTTTCTACACTGTCGAGCAGACAGCCCCGCGCTGAAACGAACCGCCAAATAATTGTTCAAATAATCGACTGCACCACAAAAAAATAAGGCCGGGAAAATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTTAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTGTTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTTTCGGCGCA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4195220-4194530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEVF010000001.1 Enterobacter kobei strain IPM1H4 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4195219 28 100.0 32 ............................ GGTCCGGTTAAATCGAAATCATCCAGGAATTT 4195159 28 100.0 33 ............................ GGTACCAGAAAGCCGGCATTATGCTGGGTGATT 4195098 28 100.0 33 ............................ GGACCTGAGAGGGCGGCCTGTTGTTGTTCTCTC 4195037 28 100.0 32 ............................ GTAGCCCTCTCGACTCCCTTCGTCGTTCGTAT 4194977 28 100.0 32 ............................ TTCCGACGGAGGCTTTTTAAAGCGGGAGTATA 4194917 28 100.0 32 ............................ AGAGTTTTACGCTTCCATCTGGCTGCTTACCA 4194857 28 100.0 32 ............................ GATCGGGGAATAACTATCAAAACCGTAGGTAC 4194797 28 100.0 32 ............................ ATTTGCACAGCCTGGAACTCTTCGAGTTGCTT 4194737 28 100.0 32 ............................ ACTGCCCGGACTGGGAAACGCTGGGAAAAATT 4194677 28 96.4 32 ..............T............. TAAATATCTGGTCTATCTGGTCGAAGTGATTA 4194617 28 96.4 32 .....................A...... GTCGTCGTCCTGTAATATGTCTTTCACAGCAT 4194557 28 75.0 0 ....................GCACCG.C | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCGCAGACGCAGCCCGTATGCCGTTGCCTTGGTGCATACCTGGAAGAAATGAAAACCGGCCTCACAGAATCAATGCGTGACTTTCAGGTGGTGGAATTTGATAACGAAGCCGAACAACCGCGACAAAAAGAGTGGTTGCTGGAAGAGACAGAAACGAAATGCGACTACTGCCGGGCATTAAACCATGTGCTGCTGGTATCGCATTTTGACCGCGATATGTTGCCGCACTTGACAGGATTACTGCATGACATCACGCATTCAATGGCGGCAGATGTGGTATCTCCCCATGATGCTGGAACGGGAAATTCTGTTATTTCTTGAGTGAAGTGCACACCGCCAGGGGCTGTCCCCTGGCGACAACGGAGAAACCCTTTTTTTGAGATGCTTTATAACTCATTGATTTATAATGTTTGCTTTTACGTTGCAGAAAAAAGGGTTTTGCCTGTTAACGTTGCTTAGTTGCCTTAATAACAATAAGATAGCGCTGTTTTCTTCCA # Right flank : AGCACCTCTCAAACCAACCCACTGTAATATTCATCAAACCTATTTAAAACCTTATACCATTCAATCTGCACTCTCTATTTTCACAATAAATAAAAAACCTATTCACGCATAAATTATATTCCATTGAATATATTATTCGTAAAAATAATATATTGTCATGAAAACATGATTTTCCACTTTATTACTACGGTGATTATTATTCATTTGATGTCCGTCACATTTGTTTTCATTCGTTCTTCGCTAACATACAGTGCATTCAACACCTTGAAATAAAAGCCCTTGCTATGTCCGTAAACAGCATCACTCCTACAGACTTAAAAACCATTCTGCATTCAAAGCGTGCCAATATTTATTACCTGGAAAAATGTCGCATTCAGGTGAATGGTGGCCGTGTTGAATATGTTACCCAGGAAGGAAAAGAGTCGTTTTACTGGAATATTCCTATCGCGAATACTACGGCGGTGATGCTGGGAATGGGAACCTCCGTTACTCAAATGGCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //