Array 1 185412-185087 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXVV01000005.1 Staphylococcus argenteus isolate M4143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 185411 36 100.0 35 .................................... CTATAATAGTTACTGCTTTTGTAACCGTCCATATC 185340 36 100.0 36 .................................... TGCCCACTTAATTAATTCATCTAGTCTCATTTCTTT 185268 36 100.0 38 .................................... CATCAACTGACTTTTTAACTGTTTTAGTGAATTCGTCT 185194 36 97.2 36 ......................A............. TTAAAGATCTCAACAATAGCGTCCCATATTTTCTGT 185122 36 86.1 0 .........A.......G....C.....G...A... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 96.7 36 ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGCACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCATTACCTTTTCTACAATTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAATTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCAAATTTTATATTTGAACTATTGATTTAATAGGCTTTAAAGAGCTATCT # Right flank : CTCATCTTGATGATCCCAATTGGCCTGGTTAAAAAGAAATCGATAACCTTTCGTAGAATAGAGAATAAGTATTAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAGGGGACAAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGAAATTAATTGACATTCAATTTCTAAATAAGCAGAGACAAAAATAACTTTCATACAAATAATTTCTTTGTGATTAAGTTGGAATTAGAAAACTAATACTAAACGAATGGAATGTATATTATTGAGGAATTGGATGCAGTGTGGTGCAATTTCGAGAACTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAGTCAAGATATAAAAACAAATATTTTTACCATAACTATATTAGTAAATACTTTATTATTTAGTATACGGATGAAAGCGAAGTGACAGCTAGCAATGCTCCAGATATAGGTATTAGTATTATAAAAGAGCAAGATTACCATTTAGAAAATGG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 194314-194132 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXVV01000005.1 Staphylococcus argenteus isolate M4143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 194313 36 100.0 36 .................................... TTAAATCTTTGATTGCTCTTAGCTCTAGTTATGTAT 194241 36 100.0 38 .................................... CACGCTGTAGTGAAGTATAGAAACGGCATGAGTACAAT 194167 36 83.3 0 ..............................AGAGTG | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 94.4 38 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : CCCAACTGTTACTAATAAAGTATCAAAAATTTCCAATGAATATTTATTATATTTTGGTATATTTATATAATCATTAGAAACAAATTTTAAATTATTCCTCTCAATTAAGCAGCTAGTTTTAGATATATTTAAAGTTCTTAAGACTGATAATTTACTACTGTAAATATATTCACTAGATTTAAACGCGTATCCTGTTCTAATATCAGCTATATTTTTTAATGAATTAATATTCCAATTTAAAGGTATTTCACCTAACTCACTATCAATCATTTCTCCACCATTAGATTTATAAGGAAGAGAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATAAGTAAAATCATCATAATATTTGTCAAAAAAAGTGACATCTCATATAGTAGCGCGGTGTTAGTTGTCACAATTTTTGACAGCCAAAATAATACTTGAACCCTTGTGGTTATGCTATCTATTAAAGTATCT # Right flank : TAAATTTAATTACACTCTAAAATTCGTGAATTTTTAATGGAATACGCATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAACCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTACGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTCTG # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 1 83831-83978 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXVV01000019.1 Staphylococcus argenteus isolate M4143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ===================================== ================== 83831 27 100.0 37 ........................... GTTGATGCGCAGCATCCAACTGTGTTCCTCTTATTCT 83895 27 100.0 30 ........................... TGCGCTTAGCGCAGGCGCTCCTACTTTTCA 83952 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ===================================== ================== 3 27 100.0 34 ACTTTAGTTGTTAGGGGCTCTTATGCA # Left flank : CAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTATCAAATTTTTCATTGGAATTCTCTTATTAAACTTAATTACTATTTTATTTAAAGTACCTGTTGGTTACTTGATTACATTAAATACGCAATCACTCTCTCAAAATGTTGCAGAAAATATCATAAAAGTTTATACAGTACTAACAATCATTTTATTTGTTGTTATTCATGCAATCATTTTAATGGGTATCGTGCAATATTACTTAAAACGTGGTCAAAAAATTACTAAAGATAAAGTAAAATCAGCTGACAAAAACAAAAATGTCGTGACTGAACCAAAAAGTACAAAAGTAGAAAATGAAAAAGTGACAACATCTGTTGAAACAAAAACAGAAAAAGCACAAGATTCATTAAAAGATGAGACTACAAAAACGATTACTTCAGATAAACCAGAAGACAATCAACCAAAATAAAATTTAGAGCCCCTTACA # Right flank : AGTTGATGCGCAGCATCCAACTGTGTTCCTCTTATTCTACTTTAGCTGGTTAGGAACTCCTTTCTAAAATAACTAAGTGCATTGTCTATACATAGTTGGGCAAATTCTATTAGAATAAATATTGTTAAACAGCGACCTCATTAATTAAACGAGAAACTTTAGAAACTGATTAGGAGTAACTACTATAACCATAGGCATCACCTCTTTATTAAGAGATTAGCCACCATCTATTCAAATTGCCCTATAAATATTTGAACATGAACATGTTTAAATATTTATAGTATAAGGTTTTTCATTTCGTTAACAACTCGATAAACAAGGGATAGAATGGTTGTCAGACACTGAATTACGGAATTATTTATTTGTTACAGATGATAAAGATAAACAATAGTACAAACATGATAAAATTGTGCATGTCTAAACAATCAAAAATGTACATTATTAAATTATCATTTCCATTCAACTAAGTGTAGACGATTCAAATAGTGTTAGTGTTGGTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTTAGTTGTTAGGGGCTCTTATGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 59439-59268 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXVV01000009.1 Staphylococcus argenteus isolate M4143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 59438 30 96.7 42 .T............................ ATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAATGAATA 59366 30 96.7 39 ...............T.............. GAGCCTCTAATCGCTAAAGCTCAAGAGTGTAGAGGAACG 59297 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 3 30 97.8 41 CAGTTGGTTTGCATGCGCACAACTGCATAA # Left flank : AAATAAATCATTGACGATTAAATCATTATTAACATGGTTAGGACGACATCATTTCAATTACCAAGAGATTAATGAGCGATATAAAGATAAATTAAGAAATGAATTATTATCTTTGAAAGGTATTGGAAGTGAAACAGCAGATGTCTTACTTGTTTACATATTCGGACGTATTGAATTTATCCCTGATAGTTATACTAGAAAAATATATGCTAAGTTAGGATACGAAAATACGAAGAGCTATGAACAATTAAAAAAAGTAATAACCTTACCAAATTATTTTACAAATCAAGATGCAAATGAATTTCATGCATTATTAGACGTATTTGGTAAATATTATTTTAGAGATAAAGATACAACGAATTATGACTTTTTAGAGCCATACTTTAAAAATTAAACGCTGTGAAGTTAGATAGATGAGTTTATATGAAATATAAAAAATAATTTACTATTTTCTTTTAGTATGTGGACTTATATAATAAATAGATGTGAATAAAGTAATA # Right flank : GAGCCTCTAATCGCTAAAGCTCAAGAGGCTCTAAAAGGAGATGGATAGTGTGAAGAAATCGTTAATTGCTTTTATTTTAATGTTTGTACTTGTTTTGAGTGCTTGTGGCAATAATAATGAAAAACATGATAGTGATAAAAAGGAAACGTCTAAAACGCCTTATCATAGAATTGTTTCATTAATGCCTAGTAATACAGAAATTTTATATGAACTGGGATTAGGTAAATACATAGTTGGTGTTTCAACGGTTGATGATTATCCGAAAGATGTTAAAAAGGGCAAAAAACAATTTGATGCCTTGAATCTAAATAAAGAAGAACTTTTAAAGGCAAAGCCTGATTTAATTCTTGCGCATGAATCGCAGAAAACAACTGCCAATAAAGTATTGTCATCATTAGAGAAACAAGGTATCAAAGTAGTCTATGTAAAAGATGCACAATCGATTAATGAAACATATGATACGTTTAAACAAGTTGGTAAATTAACTAATCGTGACAAAC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGTTGGTTTGCATGCGCACAACTGCATAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //