Array 1 1-316 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQPU01000191.1 Leptospira interrogans strain 56649 Contig191, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =============================================== ================== 1 27 100.0 47 ........................... AAGTATGCCTCCACCAGCTCCCGCGAAAAGTGCCAACTGTGCTCAAC 75 27 96.3 45 .....A..................... CGATTAAAAGTAATCGGTGAGAAAAAAACGCCGCATGTGCTCAAC 147 27 96.3 45 .....A..................... TTGTTGGAAAATCGGATTTAAAATCACCGCACCCGCGTGCTCAAC 219 27 100.0 44 ........................... AAAATTGCATATAAGACTACAGATATGGTTGTTAAGTGCTCAAC 290 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== =============================================== ================== 5 27 98.5 46 GCCTACCGGCATCAAAGTTATATTCAG # Left flank : | # Right flank : GAGCATTTTATTTAAATGGCTTTTATAAGCATAAATTGTGGATATGAGTGTTTTCAAAGGAGGAGAACAAGTATATCGTTTTTTATCGTTATTTTTCAGAAGTGCATATTTTGTTTCCAAGGATCATTTTGTTTCAAATATTAAGATTCAAGTATGTTTAAGCTCGTCACCGATTATAAATTTAGCTGGAATTTTCACAAGAAAGAAAAACGAGCGTTGGCCAATCATTAGATAGGGTCTATTTCTGAATCCGAGTAAAGATTGGATATGTCTTGGAATTAAATATAGATTCAAAGATTTAGTTTTGCTTTTTAAGTAGAATTATGTCTATGCCCTGAAGAGATACTTGAATTATAGAATTTTTAATGTTTTTGGAGCTTCTGGCCACGCGGATTTTTTTTCTTGGGTATGGGTGCCCGAAGCACACTTGGTGCAAAGAGTCAGATAAAATATATTGTCTTCTTCTTCGGTGACTTTTGCCAATTTCCACCGTAGTTTTT # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTACCGGCATCAAAGTTATATTCAG # Alternate repeat : GCCTAACGGCATCAAAGTTATATTCAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 4-1273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQPU01000208.1 Leptospira interrogans strain 56649 Contig208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================================================================================================================================================== ================== 4 25 100.0 49 ......................... AGTTGGCACTTTTCGCGGGAGCTGGTGGAGGCATACTTCTGAATATAAC 78 25 96.0 46 ..........G.............. GATCGTTTCAACGTGTGCGAAACGCATGAATTATTCTGAATATAAC 149 25 96.0 46 .......T................. GAATATTTCGTTTATATCGAAGAAAAATTAATGCGCTTAATATAAC 220 25 96.0 46 ..........G.............. GATCGTTTCAACGTGTGCGAAACGCATGAATTATGCTGAATATAAC 291 24 92.0 164 ...................T..-.. AAAGAGAAGATTTGTTTTAGCCCAAATTGTTTGCTAAAGTGTGTAAACGGATAAAATGTAGGAACTCCTGCTTTTCCGAAAAACAGTATTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAAAAGGTTTCTGGTCTCTTAAGTCAAACTTACAAAAAT A [308] 480 25 88.0 48 CGG...................... ACGTGCGGGCTTGTAGAGGTCATTACTCAAGATCCGTCTGAATATAAC 553 25 100.0 48 ......................... CCCACCTTTGCGAAGTGCCAGGCAGTTCCGTTTTTGTCTGAATATAAT 626 25 100.0 48 ......................... ACAGTAATGCAATCCTTGACTTTGGTTCAGGTGCTACCTGAATATAAC 699 25 96.0 48 ..........G.............. TCGTAAAGATCGTCTGCGTGTTCGTCGTGATACGTGTCTGAATATAAC 772 25 88.0 168 ...................T..G.T GAAGAGAAGATTTGTTTTAGCCCAAATTGTTTTACACAAACGTGCAAACGGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACGGTGCTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAGAGAGGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAAT A [789] 966 25 88.0 46 CAG...................... TTAAAAGTAAATGGGGTATAACATTAAATTCTTTTCTGAATATAAC 1037 25 100.0 45 ......................... AAGGGGCACTTGTTCGAGTCCTTCTTATCCTATTCTGAATATAAC 1107 25 100.0 45 ......................... TTTGGAATGGCCAAACTTTTCGGCCGAGGTTTTACTGAATATAAC 1177 25 96.0 47 ..........G.............. CCGGACTATCGAGAAAGTTGAGTGAGGCGGGTTTTGCTGAATATAAC 1249 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ======================================================================================================================================================================== ================== 15 25 95.7 64 TTTGATGCCGTTAGGCGTTGAGCAC # Left flank : AACT # Right flank : AGTTGGCACTTTTCGCGGGAGCTGGTGGAGGCATACTTCTGAATATAACTTTGATGCCGGTAGGC # Questionable array : NO Score: 3.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.81, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGATGCCGTTAGGCGTTGAGCAC # Alternate repeat : TTTGATGCCGGTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //