Array 1 986102-986862 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055675.1 Escherichia fergusonii strain RHB28-C13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 986102 29 100.0 32 ............................. GAGCATTATATTTATTCGACGCTGACAGGCTC 986163 29 100.0 32 ............................. GAGGCGTATCGCAGTGAATGAAATCGACCCAC 986224 29 100.0 32 ............................. ACACGGGCGCAAAAACAATTGAACGCGCCAAA 986285 29 96.6 32 ............................C GCGCAGGTGGACGGATTTGGACAACTGGAGAC 986346 29 100.0 32 ............................. ACCCTGCCTCAATATTAGCTGTGCTGGATAAT 986407 29 100.0 32 ............................. AAAAACGCGCCTAATCTGAAATGTTTGCCTAA 986468 29 100.0 32 ............................. AACGCGCAACAGAACGCCGCCACGCCGTGCGC 986529 29 96.6 32 ................T............ ATTTAAATCGCTATGCGCGTGATGTTATTAAC 986590 29 100.0 32 ............................. GAACTGTCCGAACGCATTACGGGCATCGGAGA 986651 29 96.6 32 ...........................T. ACGACGACGGCACACGAGCGGTTAATCCCGAC 986712 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 986773 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 986834 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1001822-1003254 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055675.1 Escherichia fergusonii strain RHB28-C13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1001822 29 100.0 32 ............................. TTTACATCAATGAACAGATAGTTTTTACGCTG 1001883 29 100.0 32 ............................. ATCATCATCACCGATGTGCATTCCGATAGGAT 1001944 29 100.0 32 ............................. AGACTGGCGGCAGCGATAATAAATACATGAAA 1002005 29 100.0 32 ............................. ATTCCCTGCTCGTAATACGCGTCGTATAGCGC 1002066 29 100.0 33 ............................. TAGCGCTTTGCGGTGTCCTCCAGCGTGGTTTGC 1002128 29 100.0 32 ............................. GTCGCGGTTGCAGTGCTGTCTTTCCCAGCTGA 1002189 29 100.0 32 ............................. CTATGAGGCTGAACGAAACGCCATCATGCTGG 1002250 29 100.0 32 ............................. AGCAGGGCAAGGTTCGCCCGATGTACACCCTG 1002311 29 100.0 33 ............................. CTGATTATTGCGCGTGAATTACTGGAGCATGGC 1002373 29 100.0 32 ............................. AATCACTGCGCGCTCAGATTGCCGAGGTCACC 1002434 29 100.0 32 ............................. GTTTCAGTTGTGATATTTGAAGCGGAGTTGAT 1002495 29 100.0 32 ............................. AGCGAGGAACGACGGGATCTTATTGGGTTTGA 1002556 29 100.0 32 ............................. AGGAAAACGGATGATGGAAACCCGTCGCCTGG 1002617 29 100.0 32 ............................. AGCGCGAATTATCAATCATTCAAGCGATCGGT 1002678 29 100.0 32 ............................. GGAAGCATTGCTTTTGCAGCGTCTTTCCGATC 1002739 29 100.0 32 ............................. GCTAATGCAACGTGGTTTTCTGTGCTGGATAT 1002800 29 96.6 32 .........A................... AATTTTACTGATTCAGCAGGGCAAATGAAATC 1002861 29 96.6 32 ...........A................. ACGTTTGCCAGTAATTTGGCTCGTCATGCAAT 1002922 29 100.0 32 ............................. GTTTTTGCTGCTGCCAGATTACCGAATATAAC 1002983 29 100.0 32 ............................. TTTGGTAGGAAAAAATATCACTGGTATATCTA 1003044 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 1003105 29 100.0 32 ............................. CTGCTCATTGCCATTGCCCCAGCAATACCAGC 1003166 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 1003227 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CAACTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACATCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGGTCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //