Array 1 52221-53565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIVO010000001.1 Clostridioides difficile strain JV59 862 JV59_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 52221 29 100.0 35 ............................. TTCAAAGTCAAACAAATTCTACATCACAAGCACAA 52285 29 100.0 38 ............................. TGTGATGGACTCCATAAAGCGGATTTTGATTGTATATT 52352 29 100.0 38 ............................. GTTTCAATATTGCTCATGTGTTGAGTTGTTATATTAAC 52419 29 100.0 36 ............................. TTAGAAACAGAAAATTCTTCCAAAGAATAAAAAATA 52484 29 100.0 36 ............................. ATAAAGCCCTCTAGTATCTGTCTTAGCTCCTCTATT 52549 29 100.0 36 ............................. TGTATTTATGATGCTACTTTTAATATTTTTCAAGGT 52614 29 100.0 36 ............................. CAGCAATTAAATCTCCATCCCACCAAAGCTTTCCCC 52679 29 100.0 37 ............................. GAGATAATTCGAGGATACTCAGAAGAAAATTTTATGA 52745 29 100.0 38 ............................. GGCATTAATATGCTTTTTATGAACCTCAGTGATGATAG 52812 29 100.0 38 ............................. TCTTCTGAATATTCAAAGTCTACACTTTGATTTCTTAC 52879 29 100.0 36 ............................. GAAAAAGTAGCATGTTCTTTTACAAAAGCATCAAGT 52944 29 100.0 37 ............................. GTAGAAGAAAACACATTAAATTCATCTGATAAAAATA 53010 29 100.0 37 ............................. GATATATCTCCTCTTTTAATAGCTGAATATAGATTTC 53076 29 100.0 40 ............................. AAGCATAAAAAATTAATTTTACTCAATAAAATAGTTTCAG 53145 29 100.0 37 ............................. CATAGCACTACACAAAGCATTAACAAGAGTTTCGCTA 53211 29 100.0 35 ............................. TTTGACATATTAAGTGATGTGGATAGAAGAATATG 53275 29 100.0 37 ............................. TCCTTATATGTAACCCAAATATTTAACCACTTTGTCA 53341 29 100.0 37 ............................. ATGGTCCAGCTACTACTGTCAACGCTATAAAACTTGA 53407 29 100.0 36 ............................. AACCCTTTCGCTTTAGCTTCTGCGTTTCCTGTCGCT 53472 29 100.0 36 ............................. TATTGAATGGTCGAGAGTTGTAACTAGGCACTACAA 53537 29 89.7 0 .....G..........A......G..... | ========== ====== ====== ====== ============================= ======================================== ================== 21 29 99.5 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : TAAATTGTACTATATTAGTTATAAAATACCATGCTTATATTATGTGTTTGAATTAAACTAAATTAGTTGAGATATTAAGAATAAAAATGTTAATATAAGCAAGTTATATTAAAATATATAGAAATCATATGATAATATTTATATATTTTAGATAATGAAAAAACTAATTAAAGACATAGACATATTTTTAATAGTTTGTATTTTGAGTATAAAAGATATTGATTGTTTAATTAATATCTTTTTATATTGTTATCTTATATCAAAAAGTATGTAATAATTCTATGTTAGATATGTTTTTAAATTTATTATGTCTTAAAAATAATATTTAGTAGTTTTGGTTTTGCAGTGAGCGAAAAAATCACATAAGTGGCTATAAATTAGTGATGGCAAAGATTACAACTGTATTTTTGATTATACCAAAAAACACTACTTAGGGCTCACTGCAAATTATTCATTTTAATAATACTATAAGTATTGGAATTACTGTAGTTTTATTTGGG # Right flank : TTTACTTATTCATTAAGAAACTTAACTGAGAGTTTGATTTATATTACTGAATTATCAAGAGTCTTAGAAAGTAGAAAATTATACCCCAATAATACCCCAACTACAAAAATAAACAATAAAAAACAATCAAAAAGATTGCTCTAACATCATAACTAAATAGCTATATACCTACACTTACAAAAACCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTCTCCACCATTAAAATCCAAGAAAAATATTAGCACTTTGCTAATATTTTTTTTGTGAAAACTAATCATAACCTATATAATTAACTTATAAAACACACACAAAGAGGTAAAACTATATGACTAAAATTGACAATATGATGTCCATATTATGGATGCTAAACTCAGATAAAAAAATCACCGCAAAACAAATATCTGAAAAGCTAGAAATAAACATAAGAACTGTTTACAGACACATTAATGCATTATCTGCTAGTGGAATACCTATAATTTCAGATACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 189237-192143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIVO010000001.1 Clostridioides difficile strain JV59 862 JV59_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 189237 29 100.0 37 ............................. TCATATTTAGATATAACGGTTACTTTATCTACATCTA 189303 29 100.0 36 ............................. ATATCCAAATTATCTATATTATCTAAAGTAACTTTA 189368 29 100.0 36 ............................. ATAAGAAAAAGCAACATCATAATCACGTATATTATC 189433 29 100.0 35 ............................. TTCGATGAAGTTTGTAACTCATTTGATGCTTTCTC 189497 29 100.0 37 ............................. GCTAAAGTTAAAAAATTAAGAGAAAAACATAGAATTA 189563 29 100.0 36 ............................. AATCATGTTAACAAAAAATGATTACGTTTTACCCGT 189628 29 100.0 37 ............................. GGAAAAAAATTAGTATTAAACCAGTCAACAACATCAT 189694 29 100.0 37 ............................. TGCTCTTTACAATTTTCAAAATCTAAATTCATTGGAA 189760 29 100.0 36 ............................. TCATCTGCAAATAATGTTTCATCACTACTATTAGGG 189825 29 100.0 37 ............................. TATAATGAAAGTTCTGGCGATTATCCTGTTTCGCCTG 189891 29 100.0 37 ............................. TACTTAGTCGGAATGATTGCAGGAGCTATATTTAACA 189957 29 100.0 37 ............................. CAGATTATACGGAATTTTGTCCTCATCAGTTTTTTGT 190023 29 100.0 37 ............................. GTTGTAATGTCTATCTCTTTGTCATAATATTTTTTAA 190089 29 100.0 36 ............................. GTTGTAATGTCTATCTCTTTGTCATAATATTTTTTA 190154 29 100.0 36 ............................. TTTAACAACAAGTGTTACTGCTGGATTGTCTACCGT 190219 29 100.0 35 ............................. TCAAAATTTAATTAAAAAACAATTAAATTTATCAG 190283 29 100.0 37 ............................. GTGTTTAAAGTTATAACCGTTTCTTTATGACTCGCTA 190349 29 100.0 38 ............................. TGTAAATTTAGGACTTTTAGTGTGATGGAATTGGAAGG 190416 29 100.0 37 ............................. TTACAGAAGAGGCATTTACAACGAAGTTTGTTTCATT 190482 29 100.0 37 ............................. TTCGGTACTTATTAATCTTGCTATAACTGCTAGGCTT 190548 29 100.0 38 ............................. TCTCATAACAACAGAATAAACAAAATAAATCAACATGT 190615 29 100.0 37 ............................. ATAAGTACCTTTAACAGTACTTTTCAAACAACAAAGA 190681 29 100.0 37 ............................. AAAATAGTATCTAACATAAAAAATCACTCCTTTAAGG 190747 29 100.0 36 ............................. TTGCCCGAAAATGTAAATTTAAATGATATATCTACA 190812 29 100.0 37 ............................. GTTCTGTAGAAGTAATATTCTTATATGAAAGCTTACA 190878 29 100.0 37 ............................. CAATTTTTTGTTGATTATTCTGAAAAGAATCATATTA 190944 29 100.0 37 ............................. TAGACTCAAATTTAAAATATGTGATTAAAGATAATAA 191010 29 100.0 37 ............................. GTAGATACAGGGACATTAAAAGATAGTGCTTTTGTAG 191076 29 100.0 30 ............................. CCTTTTATTTTTTATTTTTACTATATTTAT 191135 29 100.0 37 ............................. ATATATTTATTTTTATTTAACTTCTAGGAAGTAATAT 191201 29 100.0 37 ............................. AAGCATGATGAACTATATTCTGAATGGTTTATTCTTA 191267 29 100.0 36 ............................. TATCTAAAACACCTGTATATCGTGAATAACTATATC 191332 29 100.0 37 ............................. AAAATTTTTATATCAAAATCTAAAAAAGGAGAATCGG 191398 29 100.0 36 ............................. ATAGGAAAACGCAACATCATAATCAACTATATTTTC 191463 29 100.0 36 ............................. GCACATTTAACCTCTAATCTTAAAGTATTAGTCGCA 191528 29 100.0 35 ............................. GCGAGACTTACAACTTAAAGGCTCTAATGAGTTAC 191592 29 100.0 36 ............................. TTTGCCATCTCAATATATATTTTGACATTTATTCTC 191657 29 100.0 35 ............................. TGCGAAGAAATTAGAAACAATCTAAAATCTAATGG 191721 29 100.0 36 ............................. TTGCAGCTTTCTTGATTACTTGCAATAATTCTTGTG 191786 29 100.0 36 ............................. GTATCATTTACAACTACCATTTCCCTAGCATTTATA 191851 29 100.0 37 ............................. CTAAATGGAGAACCATAAATCCATAAAGTTTTTTTAC 191917 29 100.0 38 ............................. AATAGTCCTTTTTTGAATTTAGAAAGTAAATTTGGTGT 191984 29 96.6 37 ....C........................ TATTTACTTCATAATTTATGATTATAATATCATATTT 192050 29 100.0 36 ............................. TGGACTCAGCAAATGTTTTTTAAACCTTTCAAAAGA 192115 29 82.8 0 A.................A...GC....T | ========== ====== ====== ====== ============================= ====================================== ================== 45 29 99.5 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAAAGTATGTTTGTTATTGTTACTTATGATGTTGTTGAAGCAAGGTCATTAAACAGGGTTAGAAAAACACTTAAAAAATATCTAACTTGGACTCAGAATTCTGTTTTTGAAGGAGATATTACTGATGGGAAGTTACATAAATGTATTTCTGAAATAGAAAAGATTATTGATAATAGCGAAGATTCGATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTGTGCTAAAATAAGGCTTAACAGTTGGAATATAAGAGATTGAAGGCATGTGATAATTATTGTCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTCCTTGAGTGTAGTATTTTCAATCTATTCAGTTATACCTATTTTGGG # Right flank : TGAAGTAAACTTACGCTATAAATAAAAATCAACATAAAAATGGGGTGAAATAAAATTTATGATAAGAAAATCAAATGATAAAGATATAAATAAAATCATGGAAATATGGAAAGAAAGCACAATCAAAGCACATAACTTTATAAATAAAGAATACTGGGAAAATAACTATAACACTGTCAAAAATGAATATATACCTATATCAGATACATTTGTATATGAGGATGGTCAAGAAATAAAAGGATTTATAAGCATAATAAATAAAAGCTTCATAGGAGCCTTATTTATAAATTCAAACTATCAAAACCTAGGTATAGGAAGTAAACTTTTAGACTATGCAACTAAAGAATACAAGAATCTAAGTCTAGCAGTATACAAAGACAATAAAAAGGCAGTTGTATTTTACAATAAAAAAGGATTTAATATAGTAAAAGAGCAAATAAATGAAGATTCAGGATTTAAAGAGTACATCATGGAATATAGTAAATAACATTAATATATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 391140-392746 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIVO010000013.1 Clostridioides difficile strain JV59 862 JV59_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 391140 29 100.0 37 ............................. TCCAAATAATTTGGCTCTAAATTATTCATTTTACATT 391206 29 100.0 39 ............................. TTATTAAGTGCTTGTGCATGTCTCTTAGCATCCGCTCCC 391274 29 100.0 38 ............................. GTTACTGTCATTATTAATATAGAATTTGAGACTAAAAG 391341 29 100.0 36 ............................. ATTTGAAAGACGTTGAGTTACAAAATAGTTATGGAG 391406 29 100.0 38 ............................. CAACTAACAAGCGAAGAAAGAGCATACTATAATCAAGC 391473 29 100.0 36 ............................. CATACGAGGATTGAATTTTATACCCCCCTCGTCAAT 391538 29 100.0 37 ............................. TATGGTATCGCTATCATGGGTGCGTTTTTAGTTTGGG 391604 29 100.0 37 ............................. TCAATTAAAGAATCAATATTTTTTAAATTAACTCTAA 391670 29 100.0 37 ............................. CAATATTTATCTTTAAATATATTATATCATCTGTATT 391736 29 100.0 37 ............................. ATGCTTATTACTTTAACTGCTTGGCTTTCTTGTATGT 391802 29 100.0 36 ............................. CTCATTTTTTCTTTGTAAAATAATACTCTTTATTTC 391867 29 100.0 38 ............................. GTTTCATGTTCAAGCATTTTTAAAACACACTCTCTAGT 391934 29 100.0 35 ............................. TTTTTTTCTTTGACTAAGTTGATTATTCAAATTAG 391998 29 100.0 37 ............................. GATCAAAATCAAACAGCAGATGCTTATAAAATAGATT 392064 29 100.0 36 ............................. ACTTTAGTTGTTGCTGCTGTTCCTTCCCAAACTACT 392129 29 100.0 37 ............................. GAATTTGCACTAGTAGCGATAGGATTAAACAAACCAC 392195 29 100.0 36 ............................. ATAGATATTCCTTCCAAAGCAACAGGAAGGAGTGAG 392260 29 100.0 36 ............................. TCTATTCATGTTATCCGTTTTCATAGGCTCTTTAAC 392325 29 100.0 38 ............................. TAAGTCCAGAACAGTCAAAGTTACTTGGTCCATTGCCA 392392 29 100.0 37 ............................. ATTTTTATCTGACAATAGTAAGTTTCAAGGACTTTAT 392458 29 89.7 36 ................A...A.......T ATGCTAGTCTGACAATAGTAAGTTTCAAGGACTTTA 392523 29 89.7 36 ................A...A.......T ACAAGTTCAGTAGGGAGACAGACAGTAATTTTAAAA 392588 29 86.2 36 .C..............A...A.......T GTTTCTTCTTCCACATACTCCACATATACATGAAAT 392653 29 89.7 37 ................A...A.......T ATTTCACAATTATAGACGATAATTCTATTGAGGTTAG 392719 28 86.2 0 ......G.............-..T....A | ========== ====== ====== ====== ============================= ======================================= ================== 25 29 97.7 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AACCTATTATTGTTTATAGTAGATTTTATTTCAATTAAATGTTTTTCAGCATCTTTTTTCCTTTCATAACTTCCATAACTTTTCTGTTTTATTTTACCGGTTTCTTCCACATACTCCACATATACATGAAATTTTTCATTTCTTTTTCTTATGAAGGCTGATTTAATATTCATAAGAGCACCACCCTTTGAGTTAATTTGAATTAATTACTTAATTATATTTTATAACAAGTGAAAAAAATTTTCAGAGTTTATTAAAAAGTATTTATTTTTATTAAATTATAAATTGTTACAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAAGAGTTTTGCAGCGTGCGATTTTTCTGTTTAAGTATGCTTTAACAGTTGAAATACCAGGCATTGAGAGTATACGATAAGTGTTATCAATTGCACTACTAGCCGCTCACTGCAAATTTGAGAGAGTTTTATGTGTGTAAGTGTTGAAAATACTCAACTTATTTTGGG # Right flank : ATTAAAAATACTAAAAACACTTACTTAAATAGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGAAAAAAGTAATATATGGAAAAATATGTAAATATATATGTTATAATATTTTTAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACATTGATAGGGGAGGTGAGTATGTATGGATAATTTTTTATTTAATGTGTTAGCTAGTGTAACAGCTAGTTACATAGTTTACTTGATTAGCAAGTTAATCAAAAAAGTAAAAAGCCACTCTACCGCAAAGAGTGACTTAAAGATTGATATAAATTTTAAATATCATCGTAAAAAATAACTTTCAGTTATAGAACTTCACTCTACCGCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAATAAAAAAATTTTAACATTAATTATTATAAACAATGATAATGAATCTAAATTAATGAATAAATCTAATTGTAAAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 394445-395261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIVO010000013.1 Clostridioides difficile strain JV59 862 JV59_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 394445 29 100.0 37 ............................. TGATTATATAGTATCTCTGATATAAGTGCACTATTTG 394511 29 100.0 37 ............................. GAAGTATAAGCAAATAGTTTTATCTAAAAATTATAAT 394577 29 100.0 37 ............................. CTGAATTTGACGAACTCTATATAAAGAAAAAAACAAA 394643 29 100.0 39 ............................. ACTCAAAAATTAATTAAAAAAACAAATTAATTTTCTCAG 394711 29 100.0 38 ............................. ACGTATGGAATGAAAGGGATAATACGTATTGTAACAAA 394778 29 100.0 36 ............................. TATGCAAATAATCCTCGAAACAATGAGTATGCAGTT 394843 29 100.0 35 ............................. TAATGATAAATGATAATCCGATTGTATGCTATCTG 394907 29 100.0 37 ............................. AAAGTATTTGCTATATTATTTTTTCCTATTTGCAAGT 394973 29 100.0 37 ............................. TGGGATTTAAGTCGTGTTTTTGGTATTTTTGATGTTA 395039 29 100.0 36 ............................. AAATTTGTGGTTGCGGGTGCAGAAAAAAACATAAAA 395104 29 96.6 35 ............................G CAACACATGAGTAATATTGAACGAGGTGGTTCTAG 395168 29 96.6 37 ............................G TTAAAATGGATTTAAATAGCTCATATAGTATATTATA 395234 28 89.7 0 ....................-..T....A | ========== ====== ====== ====== ============================= ======================================= ================== 13 29 98.7 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TTTAGCAAAATTCGAAATAATGTAGATGAAGTTGAAAATATATATTTTCGAGAAGAAGAGGTTGAAACTAAAGAAGAAGAAAAGCTACGACAAGAAAAAAACAATGATAATAATTATATTCGAAACAGTGGAATTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGTTAGACTCAGGCGCAATTACACAGGAAGAATATAATAAAAAGAAAAAGGTATTATTAGAATAGATAATATAGTAAGCACTTACAAATATGTAGGTGCTCTTAAATTGATAGATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGAGCGATATTTGTGATAAAGTAGGCTTTAACAGTTGCAATGTAAGGTGTTGAGGGAATGTGATAAGCGTTATCAACTGCACTACTCATGGTTCACTGCAAATTTGAGAAAGTTATATATGTGTAAGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : ATTAAAAATATCAAAGAACACTTACTTAAATAGTAGGTGTTTTTTTAATTGAAAGGATGTGATGATAATGAAAAAAGTAATAAATAGGAAAAATATGTAAGAATTATGTGCTATAATAGTTGTAAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTGTATGTATGGATAATTTTTTGATTGGCGTATTAGCTAGCTTAACAGCTACTCTAATAGCTTACGTAATTGGTAAATTAATCAAAAAAGCAAAAAGCCACTCTCGTGCAAAGAGTGACTTACGAGTTGAATTTAAATTTATGTTTAAATTCAAAAAATAAACGATGTTTATGATGAACTCCACTCTACTGCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTAGAAAAAATATTACCTATAATATTTTTTATAGTCAATAAAAAGATGAAATTTTTTATACAAAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 56387-56546 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIVO010000033.1 Clostridioides difficile strain JV59 862 JV59_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 56387 29 100.0 37 ............................. TATGATACAGAGGATAAGTATCTAAATAAATATAATT 56453 29 96.6 36 ............................T ATTACTCTAAAAGTCTTTTTATCATTTTCTACCTTA 56518 29 96.6 0 .....G....................... | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 97.7 37 ATTTTATATTAACTAAGTGGTATGTAAAG # Left flank : GAAGCTAAGAAAAAAGAGGAAATAGAGAAAAAATCCTCAGAGGAGAACAAAGGAAACATGGAAACGAAAAAACAAACATTAACTGGTGAAGAATTAAAGAAAAAAGTTGAGTCAATAATTTCATCACAGTATAAAGGAAACTATTATACAAATGATATACTGGATGCAGATGGTAGCTATGTACTTAGTTTACAAGTTCAAAATGCAAGTTTTGATAACGAAAACAGTTGTAAAGCATTTACTAAAGACTTGATTAACAAGTTAAAAGAATTTAGAATAGATTCAGCAGAAATTTATTTCGTGGGTTCAAGCGGTCAAACAACATATCAAATTAACATAGATGACTTTTTGAAAGTTCAAGATAATATTGATAGCATAGATGATATGGAGTTTTTCTCTTTTAAAGATTTTAAAAATTAGAAACAAAATAGAGACATTTGCTTAAATAGCAGGTGTTTCTATTTTGTCAAATTATGTTATAATAGTACTTAAGAAATATA # Right flank : GATGGGAACAATTGTTGATGGGTTGTCAGGAACTGGAGTTTTATATTAACTATATGGAGAAAAACTTAATAAACAAAAAAAGCACTTACTTTATTGTAGGTGCTTTTATTTTGCTCAAATTACCTAACTTAGAAGTTGCTAAGTACAACTTTTGAGAATTATACAATATAAAAATGAACTAAAGTGATTGATTTTGCTCAAGTTGGTCGGTTGAGTAAAATAATTAGAAAAAATTAGTAAAAACTCTTGAAAAGTATCGCGATACAGTGTATAATTATATTATCGCGATACAGAAAAGAGGTGAAAATTATTACTGATAGCAGTAGAGCAGATTACTTCAAGCAAAGACGACAAAATAAGAAAACTTTTAGTGTTCTATTAGATAGAGAGAAAGTAGAAAAAATTGAAGAACATCTAAAAAAGCAGAACAAAACTAAAACAGTTTGGCTTGAAGAAAAAATTAGTGAAGAGTTAGAAAAAGAGGAATAAAAATAAGGGAC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 58446-59271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIVO010000033.1 Clostridioides difficile strain JV59 862 JV59_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================================================================================================================== ================== 58446 29 100.0 36 ............................. TTAATAGCTGTCTTATAATCTAAAACTCCTGTGCTG 58511 29 100.0 37 ............................. TTGTTTTACCTGACCCACTTTTTCTGAAAAACCATTA 58577 29 100.0 37 ............................. TGGATTGGTTTAGAAAAACTGTGGCTAATGATTATCA 58643 29 100.0 38 ............................. AAAAACAAGAGTGATTATGGAATTGTAAAAAGAGAAAA 58710 29 100.0 36 ............................. GTTGAATTTATGGATGATGCAATGGCAGCTCTTAGA 58775 29 100.0 36 ............................. AAAATAATTATATTCTTTTCTAACCTGTCAAGAAGC 58840 29 96.6 36 ...............A............. TTTTTTGAGGATGAAAAAGAGGAAACAAGAACAGCA 58905 29 96.6 37 ...............A............. TCTTCTTTTGAGATAAACAGTAAAGTAATAGTAAATA 58971 28 82.8 243 A.......C...........-..T....A TTAAAAATATCAAAGAACACTTACTTAAATAGTAGGTGTTTTTTTAATTGAAAGGATGTGATTATAATGAAAAAAGTAATAAATAGGAAAAATATGTAAGAATTATGTGCTATAATAATTGTAGCAAGGAAAATAATAATTGAAAAGTGCTAAGAGTGGCTATTTCCATATTAAACGCCAAATTCCATAACGGAAGGAGGTGGAACGATATGGTGATAAATTTTTTATTGAGTATACTAGCTG 59242 29 72.4 0 ..G......C.G..T.CAT.........A | A [59266] ========== ====== ====== ====== ============================= =================================================================================================================================================================================================================================================== ================== 10 29 94.8 60 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : ATTATCATGTAGTATACAAGATTGAGTAAATTTATAAGATTGTATTAAATAATTTAGTTTAGTTTTGAGGGGGATTAATACAATGCGTGAGAATTTACTTAATGAATATAATTTAAAAACTGATGAAGATGTAGAATACTTTGTGAAGTTTGCTACATTATTATATAAATTAAAACAGAATGATGAAGAAAAGTTTTATGAATATGCAGAGATATTGAGAGGTATTCTTAGAGAACAAGAAGAGAGAGAAAAGAAGTAAATAGAATAGATAAAGCACTTGAATATTCTGTTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTGTTCGATTTTTCTACTCAAATATGCTTTAACAGTTGAAATACAAGGTATTGAGAGTGTATGTTAAGTGTTATAAACTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATATGTGTAAGTATTGGAAATACTCAATTTATTTTGGG # Right flank : ATAAAAAACCACTCAAACGCCAATAAGAGTGGTTTAAAAAAGTAATTCTTTAAATCGATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTATTTCCTTGCTTTTATTATACCACAAATTATAAAAAATATTACCTATAATATTTTTTATAGTCAATAAAAAGATGAAATTTTTTATACAAAATAATGATGAATCTAAATTAATGAATAAATTTAATTGTAAAACGGTAAATACAGTAAGCACTTACAAACATGTAGGTGTTTTTTTATACAAAAAATCAAAGGAAGTGAGTTTATGGTAAGAAAACTGCGGTGTAGTATTTAAAAATACTTTAGAAAGGAAGTGATAACTTGGTAATAGACATATACCTAAAAAATGAAAAAGAAAAAATAGATTTCCATTTTCCGGTTAATCCACTTGATAGTTTATCTATAAAGAAAGAAAAAAGATTTGAAACTGTTGATATAGTGAATTTAGGTGAATTTGACATTAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //