Array 1 144559-144769 **** Predicted by CRISPRDetect 2.4 *** >NZ_PION01000001.1 Klebsiella sp. G-Nf4 NODE_1_length_1227609_cov_12.7829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 144559 28 100.0 33 ............................ TCGAAGAAGTCGAGTCTGGTGCATTTGATGGCG 144620 28 100.0 33 ............................ TGAGGGGATACAGAAAGAAAAACTACCCTTTCC 144681 28 100.0 33 ............................ CTTTCAGCAACAAGCGGCTATCGTTCGGATTGA 144742 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 4 28 98.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTACGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCATCAGTACGTCGCGCTACGTTCAGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGAGGCGGGCAGGCAAGTAGGGTATATCGGTTTTGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAAGGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGGAAGGGGATTCCTGACGTAAAGGCATCAATGCCGTGACATAGTTATCCTTAATGTAGATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATATTTTTTATATGATTTTACTTATAAATATTCGTGAACTATGTTTGTTCTATACTTTCTTTAGGGACATCTAAATCGTTCGAGTTTCTTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAATTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGCGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAATTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGACCAGGGTTTCGCTACAAAATCAACATGCCATAGCGGCGATAAGTTTTGAGAACTGCCCAGCGAAAACCCGGATG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 153523-154585 **** Predicted by CRISPRDetect 2.4 *** >NZ_PION01000001.1 Klebsiella sp. G-Nf4 NODE_1_length_1227609_cov_12.7829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 153523 28 100.0 33 ............................ CAACGAACCAGCTTAAATTCGCACATAGCACCT 153584 28 100.0 33 ............................ TCTACCTGTCAATCCTGCAATCCTGCCGGGGGG 153645 28 100.0 33 ............................ TAAAATCGCCGGGTGGGAGGACTGCCGCACCGT 153706 28 100.0 33 ............................ TTTAATTACATCAATGCCGGCTAGTGTAATCTC 153767 28 100.0 33 ............................ CAGATGGTCCCTGGACAGCCCTTCCAGTGCTGG 153828 28 100.0 33 ............................ CAGATGGTCCCTGGACAGCCCTTCCAGTGCTGG 153889 28 100.0 33 ............................ CATCCGGCGCCTTAACGAGCACTACCGATCCTA 153950 28 100.0 33 ............................ TCCGGAGAACGCAAAAGCGGGCAAGGCGATTGG 154011 28 100.0 33 ............................ TGAAGTAGCCTTTTTATTATTCCTGAACAATCC 154072 28 100.0 33 ............................ CGTGCCGGTGAGCACGTCGCCAATGCGCCCCAT 154133 28 100.0 33 ............................ CGTATCACGACTGCCTGGTGAACCTGCTGGATA 154194 28 100.0 33 ............................ CCACTACGTTTGTGGCTCCATCATGCAGCAGAT 154255 28 100.0 33 ............................ CTTTGTCGGCGGCGGCGGGGCCAGTACCGGGAT 154316 27 85.7 33 ...............-......G.GG.. TACGTAGAGATAAACCCGGCCCTCTTTATCGTG 154376 28 96.4 33 ..............T............. CGGGGCTCACCTGCGTAGTTGTTGGCCGTCAGC 154437 27 89.3 33 .........G....T..-.......... CATGATTACCTCGTATCAGAGCGGCCGCTATCT 154497 28 96.4 33 ..............T............. TCTCTTGATACTGACTCGGTGCCCGAGCGAGAC 154558 28 71.4 0 ..............T.....AC.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 18 28 96.6 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGAGCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTTTTCGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGAACTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : AATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGATGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAACAATAACGGCGAATGATTATTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGCCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACTCCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAATTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTACGATGAGGTAGAGCACAGACTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //