Array 1 63586-62519 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGVN01000004.1 Salmonella enterica subsp. enterica serovar Heidelberg strain T_NS-021A NODE_4_length_345354_cov_36.1521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63585 29 100.0 32 ............................. GCCGATGACGGACTGGAGGGTGTAGAAGCTGA 63524 29 100.0 32 ............................. ATAAATAATCCGCGTTTCCTCGTCAGGTTCTT 63463 29 100.0 32 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAA 63402 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 63341 29 100.0 32 ............................. GCCGGGGTTTCCCAGAGGCATTCTGATGAAAG 63280 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGA 63219 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 63158 29 100.0 32 ............................. AAAACCCAGGAACGGCACCAAAATTTACACAT 63097 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 63036 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 62975 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 62914 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 62853 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 62792 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 62731 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 62670 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 62609 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 62548 29 96.6 0 ............T................ | A [62521] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGAAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81717-80346 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGVN01000004.1 Salmonella enterica subsp. enterica serovar Heidelberg strain T_NS-021A NODE_4_length_345354_cov_36.1521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81716 29 100.0 32 ............................. AAATACTGGCCGTCATAACAGACTGAACTAAA 81655 29 100.0 32 ............................. CACATGGACATGATCCGACAGTTTCAGACCAT 81594 29 100.0 32 ............................. GCTTGCCTTTAAACCGCGTCACCAACGTAACC 81533 29 100.0 32 ............................. CCAACAACGGAATGGCCACCATTGAGCAGGAG 81472 29 100.0 32 ............................. GAACGCAACGATATAGAGTTAGTTGTCGTTGG 81411 29 100.0 32 ............................. TCCATCAATCACACGCTGGCGATCTTTCACTA 81350 29 100.0 32 ............................. TCATGCAGGGCGTGAGCATCAGGGCGACGAAC 81289 29 100.0 32 ............................. GGACGCTGGCATATACCAGCACCATGACATAG 81228 29 100.0 32 ............................. CGCAGATGCCCGGCGGCGGCCGTACTCCTGTA 81167 29 96.6 32 ..........T.................. AATGAGGTAGTCTTCACGCGTCATTGACTGGG 81106 29 100.0 32 ............................. GCCGCCCGAGAAAAAGCGGATCTGGATTACGC 81045 29 100.0 32 ............................. TCTGATATCGCTTCTTATGGACAAACGCGCGG 80984 29 100.0 32 ............................. CGCTGGTAGAGGCGCTGGAGAGGGCGCAGCAG 80923 29 96.6 32 .................A........... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 80862 29 100.0 32 ............................. CGGCTAAAAGTCGCGCTGGCAAGATGTCAGCG 80801 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 80740 29 100.0 32 ............................. AGCCGTTCCCGTTGAATACGCCGGCGGTTATC 80679 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 80618 29 100.0 32 ............................. GTCAAGGTGTGTAATTGAGGCATCAAGTTCAG 80557 29 100.0 32 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 80496 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT T [80491] 80434 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 80373 28 86.2 0 ...............A.AA......-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //