Array 1 6642-5418 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYRK01000004.1 Streptococcus agalactiae strain GCH58 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6641 36 100.0 30 .................................... CACATTGCCTTTTTGCCACATGCGATAATA 6575 36 100.0 29 .................................... CGTTCAATCTGTTCTTGCTTTTGGTCATC 6510 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 6444 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 6378 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 6312 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 6246 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 6180 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 6114 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 6048 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 5982 36 97.2 30 .............................A...... TAATGTCTTTTCCTAGAATGTACATTTCTA 5916 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 5850 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 5784 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 5718 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 5652 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 5586 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 5519 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 5453 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //