Array 1 385032-385244 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074132.1 Nocardiopsis sp. HDS12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 385032 30 100.0 31 .............................. ATAGCGGCGGCGGGCAGTCCGGCCATGGTGG 385093 30 96.7 31 .............................A ACCACCCCCCAGAGCCCAACGGCGGGAGGCG 385154 30 100.0 31 .............................. GAGGCATGCTTCCCAGCTTCAACGACGAGGA 385215 30 93.3 0 ......................C......A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 97.5 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GAGCCGGTCGGTGTCCTCCTGGCCGTACTCCGCGATCCGGTCCCGGTCGAAGCCCTCCAGGGCCCGCCGGTAGTTCTCCCGTTTGTTGAGCACGGTGGACCAGGACAGCCCGGCCTGCGCGCCCTCCAGGACGAGCATCTCGAACAGGTGCGCGTCGTCGCGGGAGGGCCTGCCCCACTCGTGGTCGTGGTAGGCCCGCATCAGCTCGGACGACCCCCGGGCCCAGGCGCAGCGCTGGTCGGACATGGCGGCTCCTCGGGGCTGGCGGCGGTGGTCGCCTCCATGGTGCCGCAGGTCGGTGACAGTCCGGACGCGTCCTTCGGTCGGGGTGCGTTGCGCGGGTGTCTAGCTGGTCGCGGTCCTGATCAGTAGGGCGAGTGTGCTGGTCCTGCGCGTGAAACCATGGGTCGGTCCGGACCTGGCTTTGTGGGTGAAATGTCTGTTTCTCGGGAAGTTGGAAATTCGGCCGCTTGCCGCTGGTAAGTTCCGAGGTCAGTTAC # Right flank : AGCGACTGACCGCGAAGGGCCGCATCGTCCGGGGGGTCAAGCGGTGCCGTGCCAGGATCTCCACAAGGCCGCGTAGGCGCCGCCCGCGTCCACCAGTTCGTCGTGGCCGCCCAGTTCGGTGATCCGGCCGTCCTCCACTACCGCCACCCGGTCGGCGTCGTGCGCGGTGTGCAGCCGGTGCGCGATCGCGATCACCGTCCTGCCCTCCAGCACCGCCGCGAGGGAGCGCTCCGCCGCCCGGGCGGCGGTGGGGTCCAGCAGCGAGGTGGCCTCATCGAGCACCACCGTGTGCGGGTCGGCCAACACCACCCGGGCCAGGGCCAGCTGCTGTGCCGCCGCGGCGTCCAGCGCCGTACCGCCCGCGCCCAGCGGGGTGTCCAGTCCTTCCGGCAGCTCCCGCGGCCAGTCCGCGTCCACCGCCTCCAGCGCGGCCAGCAGGTCGGAGTCGTCGGCCTCCTCCGAGGCCAGGGCCAGGTTCTCGCGCAGCGTCCCCGCGAACA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 860748-861020 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074132.1 Nocardiopsis sp. HDS12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 860748 29 96.6 32 .....................A....... CTCGAAGCGGAGGTTCTCCAGCCTGCCGGGAT 860809 29 93.1 32 ..........T..........A....... TTGGCCAGGGTCGCGGCCGGGTCGCCGAACAC 860870 29 93.1 32 .C...............A........... CTGACGGCGGAACTCGCCGTCGATTCGCTGGA 860931 29 96.6 32 .C........................... ATACGGTGGCGCGAGCCGGAGCCACACCGGAC 860992 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGAGCCCCGCGCACGCGGGGGTGGACCG # Left flank : TCCTCCCCAGCCATAAGCACCAGTGGCTCAACGGTGAGCTTGCCTAATGCAGGTCCGCATGAGAAGGCACCTACGTTCTCATCGTCAGGTCGACTCCGGTCTTTTCTGCGGGCCGCCCACACCCTCATAACCGCCCGACGCTTGACCTCTCACGTGGGGGTCAACGCCATCGCCTCTGCCTTCTGCTGTCTCCACCAGGTCGCGATGCAAGCCACCTACGCGAACTGGTCTGCCAACGCGTGGGCGTGGAGGGCGTACGGGTGCCGATGGCTGCGGAGGTGGCGTTCTTTGCTCCTAAGGCAGATGTCGATGTGGGTTGAGTCCTCGGCGAGATAGGGGATCGGCGGTTGTTCTGGTGGGCTCCAGCGGTCATGAGAGCATGCTGTGAGGTGAAGTTAGCGTTGGGGCGGTGCTTTTCGCGGGATGGTCGAGGTTGGTCATTTCTGGCCTGGCTCGTAGGTCTCGTGGAGATAACGCCCCGCGTTGTTGCAGGTCGTTAA # Right flank : GGGCAAGAAGTGAGCCCCCGCCGTGAGTTCGACGTGTCCCGCACGACCATCCGCCGCGCGCTCGCGGTCCGAGGACGTCGGCGTGGTGCGGGTGGATCGGGTGCGGGGCCGTGTGGTCGGCGCGGGCCCGGTGCGCACCGGGCCTCTGCGCGTTGAGATCGCCGATAGGGTCCGTGCATGCATCGCTGAGGGCATCGTCCTACCCGCCCGGCTCCACACTGTCGCCTGAGAACGCCTTAGCAGGCTCGGAAGGGGCGTCTAGGTCTACGGTGCGGGCGGCACTCCAGATCTTGGAGAGTGAGGGTCTGGTAGTCGCAAAGCAGGGGCGCGGGCGGGTAGTGGCCACTTCCGGTCACCGCTGACTGCCTTACCCGCAGCGGACACGAGGCGCGGGAAGATGCCCTCACATGGCGCCAGAAAGGCGCCCGATCAAGGGGTGGCATGGAGCTCTATGAACACGAGGTCCTCGTCTGGGATCTCGATAAGGATGTCGACTTCCC # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 881608-883590 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074132.1 Nocardiopsis sp. HDS12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 881608 29 100.0 32 ............................. TTCGCGCGCGGCGGCGCGGTCGGAGCGCTGCC 881669 29 100.0 32 ............................. GCGACGAAAGGCCGGCGGGCGATGGAGTGGTC 881730 29 100.0 32 ............................. ACGAAGAAGACCATCAGCACCGACGTGGTGGC 881791 29 100.0 32 ............................. GCCGCGGACCGCCTCGACGGGCGCGTCGTCAA 881852 29 96.6 32 ............................C TGACCGTCACCGCTGAAACCCCCACCACCCCC 881913 29 100.0 32 ............................. CACACCGACGCCCCAGCTGCCCGCGAGTACCA 881974 29 100.0 32 ............................. GAGGGGACATGTACGACTACGCCTCCGTGTTC 882035 29 100.0 32 ............................. GATTCCTTAATAGTTGGGGCGTCCTGGTGTCG 882096 29 100.0 32 ............................. TCGCCGCTCACGGGCCCGAGGAGGGTGCATGA 882157 29 100.0 32 ............................. CTGAGGGCGCCGACCGGCGTCCGCGTCCTGGG 882218 29 100.0 32 ............................. CTGAGGGCGCCGACCGGCGTCCGCGTCCTGGG 882279 29 96.6 32 ............................C GGACGGCGCAGGCCGGACGCCAGCCGGTCGCG 882340 29 100.0 32 ............................. GACTTGCCGCTGCCGGGGTCCCCATACACCCA 882401 29 100.0 32 ............................. GTCACCGCCATCACCGACCCGGCCATGCGCGC 882462 29 100.0 32 ............................. AGATCGTCGGCGGCCCCCACGCCGGACAGCTC 882523 29 100.0 32 ............................. CAGTCTTCACTGACGATGGTGTGCCAGACCAG 882584 29 100.0 32 ............................. CCTGGCCTCTGCCGGATCAACCAGGCGTGGGT 882645 29 100.0 32 ............................. ATCGCGAAGACCGCGCTCATCGTCGGCGTTAC 882706 29 100.0 32 ............................. GGCGCCGGATCTGATCCGGCGCCCTTCCTTTG 882767 29 100.0 32 ............................. TACACCAGGCGGCCGGTGTCGATCTCGTAGGC 882828 29 100.0 32 ............................. CCCTCCAGGCCCGCACCGACGGGGACCTGGTG 882889 29 100.0 32 ............................. GGCTCCCGATCGTGGAGTTCCCGCAGTCCCCG 882950 29 100.0 32 ............................. GAGGAGATCCGGCGGCGGGGCGGTAAGAGCCC 883011 29 100.0 32 ............................. ACGGATGGGACCCCGGCGCCGCCTCCGGCCTG 883072 29 100.0 33 ............................. GGGTCCGCGCCATTCCCGGAGGTGCCCCCGGTG 883134 29 100.0 32 ............................. GCGCACACGTAGACGGACTCGCTGGTGGCGGA 883195 29 100.0 32 ............................. CACGTCGGATCGTGCCCGTCCCGCCTGTACGT 883256 29 100.0 32 ............................. GCTCCTACTACGGCTACAACGTCGGCCTCGAC 883317 29 100.0 32 ............................. AACTCCGTAGCACAAGGGTCCTACGAAAATAT 883378 29 100.0 32 ............................. CTCCAGGACGAGGCGGACGAGGGGAACACGTT 883439 29 100.0 33 ............................. GGTGGCCCGCGGGCAGCAGGGAACGCAGGCGGT 883501 29 96.6 32 ............................T GCATCACTTCATCCTGTACACCGACCTGTGGC 883562 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.7 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : TCTGGCATATCTGCGGATCGCGGCGGCGGAGTACACGCACGAGCTGCTGTCCGAGGTGGAGTTGCCCTGGATCGAGGAGAAGCGCCAGGCCTACCGTCGGGCCGCTGCCGACTGCTTCGTCAGCCTGGCCAAGGCCAGTGAGGGGCCGGAGCAGGGGCTGGTCTGGCTGGAGCGGGCGAGGGAGTCCGACGGCCTGAACGAGGCCGTCTACCAGGAGGTCATGCGGACCCAGGCGGCTTTGGGACGGTTGGACGCGGTCGAGCGTGCCTACCAGGAGCTCAGCGAGCGGCTCAAGGCCATGCGTGCTCGCCCCAGTGTCACCACGAGCAAGCTCTTTCAGGAGCTACTCGGCCGTTGAGGTTGCGTTGGCTGGGATGCTGGTGGAGCTGGGCGCCGACTGTGTGAGTATGGACGCGGAACGGGCGTCGGAGAGGTTTTAAACAAGCTCTCCGCATAGATTGCGAGGAGATAACGGCCTGCGTTTTCGCAGGTCGTTAAGC # Right flank : GCTGTCCAGTCGCCGGAGCGACCTTCAGGTGTTGTGAGTACCGCCATGCGGAGGTCAAATGGCGGTACGGAATTCGCCTGCTTTCTTGGTCGAGCCTGTTCGCCAGGGTGTTCGTCTAAGCGTGCGAACAGGGTGGAAGGCACTGACAGGGCAGGTCAGAGTGGGTGCAGGGTGTTCGTTCTGACGCCCCGACTTATAGCGTCTTGCTACTTCTTCACCGGGGCGGGGGAGGGCTGGGGGCGAGAGGTTCTCACCGCTCGGGTGTCCAACCCGGTGGGTGCGGGTGGCTTCTTTGGAGGGTGAAGGGGACTTCATCCGAGGAAGGGGCGTACCCATGTGGGCGTGGGACGAGGACAACGGCTGGTGCCGGGGCGGCGAGCGCTGGTGCTCCGCGAAGGCGGGTCATGGCCAGGGCCGCTGCCGTCGGACGAAGGAGCCCGTGGTGCCGGTGGCGGGCCAGCGGGAGCGTCAGATGTTGCTGACCGACCTGCGGGCGCTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 4 2122559-2122770 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074132.1 Nocardiopsis sp. HDS12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2122559 29 100.0 32 ............................. GTGTCCCGGGTCGGGACCGGGTGGTGGATGGC 2122620 29 93.1 32 .........A..................T CTCATACGTAGCGCCGTCCAGGCCGAGCGTGA 2122681 29 93.1 32 ........................AT... GCCGAGATCGACGACCTCGCGAAAGAGGTCGG 2122742 29 79.3 0 ..A.....T....G........C...TT. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 91.4 32 CTGCTCCCCGCGCACGCGGGGATGGCCCC # Left flank : GTCCGCCGAAGCTGCACAGCGTCGGAGCGAACGGTCCCGTGCCTCCCGGGGCTGCACTCCACGTGTGTGCCGCTGTGGAACTGGAGCCGGAGGCGGTCCGAGCCGAAGCCTGGCTGCACGGTCGATGGGTGCGGATTCGCCCCGCCGAGTGAACACCTTTGCTCGTGCCTGTCTTCGGAGTCCAACGCGACCGGAGACAGGCACTTCTTGTGCGTCCTGTGCGGGAAAGTCCGTCTTATGTACGAACCAGAGGCGTCGCAGTTGTGCCGTCGCTGTACTAATGTCACAGGGCTGTGCTGGGGTCCTCTGGAAGGTGCGCGCCGTCGCGTGCGGTTTTCCAGCGTTGCACGATGGTAGTTGTGCCCTAACTGATTGGTGGGACAAGCCTGGTCTGCGGTAGGAAGAGTTCAAGGACTGCCTTGGCAGGGAGGGGAAATATCCGTTCTCAGGAAGCTGGAAAAACGGCTGCTTTCCTCTGGTAGGGCCGCAGGTCATGAAGT # Right flank : CCGCTGCCTCATCTGGGGTTTTAAGGCCGGATCAGGATCTGTCTGAAGAACGGTCGCTCCTGACCACCAGTGTCAGGATGCCCACTGCTGCCCCGAACGCGGCACCGGCAGCCAACAGAGCATCGGGCCAGGAAGCCCCTGCCGCCAACCGCAGTGTCCCTGCGAGGACACCGCACCCCGTGCTGCCCAACAGGATGAGTGCAGCGCGCACCTCAATCATCTTCACTCCCTTCACACCGGGGCTTCCGGTCACTATCAAGCCTGAAAGCAGCTACACCCCGATGCTCCGCCCGCTTTCTCCGGACTGATCGAGAGCATGAGGCGGCCCCTGTAGTGCTTGTCAGAGCCAGAGATCGTTTACGCTTGTCCTAGCTTGTTTCTGCTTGCTGAAGGTTGCCCAAAGGAGTTTCGGGATGGTGAGGTCGATCCGGATGCCCTCGCAGAAGGAGTTGCCTCCAGGGCCGCAACGCAGGTTCATGGAGACGCTGTTCCGCTTGTGG # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2879088-2879907 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074132.1 Nocardiopsis sp. HDS12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2879088 29 100.0 32 ............................. GCGAGTTCTGGGCGCTCTCGGAGGGCTCTTTT 2879149 29 100.0 32 ............................. CCCGGCTGCTTCTGGTGGACCCATCGTCACCT 2879210 29 96.6 32 ............................T CCAGCGTGGTATTTGCCAGCCACCGAGGAACA 2879271 29 100.0 32 ............................. ACCAGACCGGGCCCCAGCAGTGGCGGCAGTAC 2879332 29 100.0 32 ............................. ACGCGCGGCTTGTATGCGACGTCATCAGCAAA 2879393 29 100.0 32 ............................. CCGCGAGCCAGGTAGTACTGCTGGAGCGCGAC 2879454 29 100.0 32 ............................. CCCGCCGCGGCGAACTCGCCAGCATCTACGGG 2879515 29 100.0 31 ............................. GCCCTCCAGATCCGCTCTGGAGGGCCTTTCG 2879575 29 100.0 31 ............................. TCGCCGGAGACGACTTCCGAGAGCGCTTCCG 2879635 29 100.0 32 ............................. GAATGCACGGGCGTGCGGGTGCCTGACCTGGA 2879696 29 100.0 32 ............................. CCGCCTAGGCCGACGTCTAGGAGCGGTGCGAG 2879757 29 100.0 32 ............................. ATTCGGCGGACCCCGGCGAACCGCTCGTAGGC 2879818 29 100.0 31 ............................. GGGTTGGCGCCCCTCCTCGGGAACGTGTTCG 2879878 29 93.1 0 .........................T..A | T [2879903] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GCGAACACTGTCATCGCTGTTCAGAGCTCTTCTTGGAGCTATCGGCGGACAGCCGCCCAGAAGAGGTTGCCTACTCCGATCCTGCAACTGGGTGCCTTGTGTCAGCTTCCTGCCAGCGCTTCGCCCGCGTTCTGCTCGCCGTCCGTGAGCCTTTTGTGCGCCTGCTGTCAGCCGGACTTCCTTCGGCTTTCGGCGTCACCCAACCCCTGCCCACCTGGTGGGCGGAGTTCGGTGCTGACGGCAACGACGACGGGCGGGCGGACCCGCACAACGCTCCTCGTGCGGGTGCGACCATCCGCGTAGAGCCCGTTGAGGGGCCGTACTACTCGTCTCGTTTCATGTCTGCCGTTCGTCCCGGCTGAGGAGCTTGATCGAACGCTGGAGCAGTTCCTTGGCTCCTATTGTGTGAGGATGGACGCACGCGGGCCACGAGGGTGGCTTGTATCTCTCAGAGAAGATTGCGGGGAGATAACGGTCCGCGTTTTCGCAGGTCGTTAAGC # Right flank : ACCCGGTTGCCGCCCTCAGCGACGGCGGTGAGCGAAGGCGCCCCTCAACGCCGCGCCGCGCACTGTGCGTCGCGACGTTGAGGGGCGTGTGCTGGCCGCCGCCGTCAGCCTTCCTGGTCGCCGACGGGGACGAAGTTGGCGTACTCCTCGATGCGCCTGATCCGTCCGGCGTCGTCGAAACCGAAGTAGACCGCGGCGTGGACCTCGCCGCGCGTGCCGCTGGTGGTGGCAACGTGGATCACGTGCTGCTGGAGGACCTCACCCGGCTGGGAGAGCTGGCGCAGGACGTCGTAGCGCATCGACTCGATGGAGGCCATCAGTCCTTCCATTCCGGCGATGTTCTCCTCGATGGACTGCTCGCCCTTGCCGTCGTTGTGCCAGACGGTGGCTGTCTCGGCGCACAGGCCCCGGGCGCTCTTCCAGTCGCGGTTCTCCAGCGCGCGGAGGTATCTGATGGCCCTGTCCTTCAGGTCCTGGCTCATACGGGTCTTCCTTCGGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 6 5083836-5084448 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074132.1 Nocardiopsis sp. HDS12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================== ================== 5083836 29 93.1 32 ....................A.......G ACACCGACGACCAGGGAGTGCTCGCGCTGCTG 5083897 29 96.6 32 ....................A........ CAGGCTCGCCCGACGCCGTGGCCGCTGACCGA 5083958 29 96.6 32 ....................A........ TGACATGGCCGGAGAGACCCAGATCTGCATCG 5084019 29 100.0 32 ............................. GCGTCCGTCAGGCTGAGCCAGTCCGCCATCAG 5084080 29 100.0 32 ............................. GTCCTGGTCCTGGACGAGGCCGCCACCATCGA 5084141 29 96.6 66 .........................T... CAGTCATCGAGGAAGTGGCCGATCTTGCGGGCCCGCGGGCCACGGACCCGCGCCGGATGGCGGTCT 5084236 29 93.1 32 ........................AT... GAACAGGGCTACCAGACGGGCGCGGCCTACTT 5084297 29 86.2 32 .........A.A....T........T... ATGTAGATGTGGCGCAGGGCGATGCCCTCCTC CC [5084302] 5084360 29 89.7 32 ..............T..A.......A... AGCCTGGAGAACTTCCAGCGGGGCGCCAGCGG 5084421 28 82.8 0 ............A.T........-A...A | ========== ====== ====== ====== ============================= ================================================================== ================== 10 29 93.5 36 CTGCTCCCCGCGCACGCGGGGATGGGCCC # Left flank : CTGACCTGCGTCGGAGCGATCGGGGTGCGGTGGACGTCCGGGTTTTCAACGTGTATTCACCGTGGACACCACTGCGGGGGCGGCCGTCTGCTCCTGGCGGCCGGGCTCAGCAGTCGGCGCGAGGAAGGAGCGCGGCCAGGAGGAGCTAGCCAGTGGGGGGCTCGCTCCTGCTGTGCTCTTCACCTTCTTAGAGAGTAAGGAAACGCAGCCTCCGCAGCCTCCGCATGTGCCTTGAAAGTTCCCCTGATCTGCGGCGATGACGCGGAGGCTAGGCGTGAGGGCCAGCCTCCGCCAGCCTCCGCAGGCTCCGGGATAGCCTCCGCACCTACATTCGCCCCCCACTGGCTAGCTCTGCACGTCAGGGCCATCTGGCGGGGTCGGGTGCAAGTGAGGTATGAAGGCACCAGAAGCTCGGACCTATACCCGTGGGCGAAATATCTGTTTCTCAAGAAGTTGGAAAAACGGCTGCTTGCCGCTGGTAAGTTCCCATGTCAGTGAGT # Right flank : ATCCACGAGCTTCCGCTTTTCATGCGATCACACCATCCCTCACGGGCGCCTCCTTGACCTGCGTGAACACTAAAACTAGTTTGGCTGTGACCGAGCTTGGCCGCGTATTGGCCGCAGCAGACTCCTGAACATCGCTTGGAGCTAGCAGGGCTCCTGCTGCGCTCCTCACCTTTTTAGAGAATACGGGTGGGATTCCCTGCCTCAGGGAACCTCGTTCCGAACGCCATCGTCGGAATCGTTGACGTGGTCGGCTGCTCGCACAACCACCCAAGCTCGTAGGCGATCTCCGGCTACTGGCACTGGGTCATCGCCAACCTGCGCACGTTGCACGAACCGATCGTGTGCAAGAGGGCGCTCAGCTTGCAGCAGACCTCCAACGAGGCCACTCGGCAATGGCCGAACGAACAGTGGGAGAGTGCATGACACCTGAAATCCTGGTGGGCTTGATTGGCGCAGGTGGTGCTCTGAGTGGCGCACTGCTTGGTGGTCTCGCAACGTTC # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.21, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGGCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGAATGGGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //