Array 1 25920-24365 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAGG01000023.1 Neisseria meningitidis strain Neisseria meningitidis isolate 21966, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 25919 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 25853 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 25787 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 25721 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 25655 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 25589 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 25523 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 25457 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 25391 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 25325 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 25259 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 25193 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 25127 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 25061 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 24995 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 24929 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 24863 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 24797 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 24731 36 100.0 30 .................................... TGCTGAAATTATGGCAAGTATGGGGCAAAG 24665 36 100.0 30 .................................... TAGCAAACAAGGAATATTCAAAGTCCTTTA 24599 36 100.0 30 .................................... CGGCAATGCGGCGGCTGTGTTGGTTGGCGA 24533 36 100.0 30 .................................... TCATCGTCCGCCTGAAGCGTGTGCAGACCA 24467 36 100.0 31 .................................... ATGCTTTTAGCGTTTGTCTGATCGAATTTGA 24400 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 27-195 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAGG01000175.1 Neisseria meningitidis strain Neisseria meningitidis isolate 21966, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 27 29 100.0 39 ............................. CCTTGGGATAACAGCAATATTCAAAGATTATAAAAGACC 95 29 100.0 43 ............................. ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATGC 167 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =========================================== ================== 3 29 100.0 42 CGTCATTCCCGCGCAGGCGGGAATCTAGA # Left flank : GGTGCAGGTTTCCGTATGGATGGATTC # Right flank : CCATTGGACAGCGGCAATATTCAAAGATTATCTGAAAGTCCGAGATTCTGGATTCCCACTTTCGTGGGAATGACGGGATTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCATTCCCGCGCAGGCGGGAATCTAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.60,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA //