Array 1 669662-671677 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUH010000001.1 Streptococcus thermophilus strain 24855 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 669662 36 97.2 30 ..........G......................... AAGGCGCTTGATAGATATATCGAAAGCCAG 669728 36 100.0 29 .................................... ACTATTTGGCACCCGTTGGATTCGATTGG 669793 36 100.0 30 .................................... GAGGCTTCACTTGCTAACGAGTTCGTCTTT 669859 36 100.0 30 .................................... AATTTGTGAGCTCTGGTTTTAGAGTAATTT 669925 36 100.0 30 .................................... AGCATCTGTGAACTTGATGTCTGGCAATTT 669991 36 100.0 30 .................................... TCTCATAATCACCAATGCCGTCAACGTTGT 670057 36 100.0 30 .................................... TAAGAAATCAACGCAGATTTTCAGAACACA 670123 36 100.0 30 .................................... ACTACTGCAGATTTTGAATATCTTACTCGT 670189 36 100.0 30 .................................... GGAAGTCATGGTTAATAATTGGGAATTGTT 670255 36 100.0 30 .................................... GGTAGAGATTTTGTCTTGGCGAGTGTGCCT 670321 36 100.0 30 .................................... CGAATCAGAAAACATATGGATGCATCTCGT 670387 36 100.0 30 .................................... GTGGAATAGATGAATAGACTTAAAGAGTTA 670453 36 100.0 30 .................................... AAACTTACTAGTTGAGAACGCAACCCCTCC 670519 36 100.0 30 .................................... GCAATTTATTCGCTTGATGTACTCACGCTT 670585 36 100.0 30 .................................... GTTTTCAATCAGATTGGTTTATTGAACAGG 670651 36 100.0 30 .................................... AGTCACCTCAAATCTTAAAATTGGGCTGAA 670717 36 100.0 30 .................................... AAAATCAATGGAAAAAGATTGTGGAATCAA 670783 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 670848 36 100.0 30 .................................... TCACATGTAGGCAAATATACCGACGAGGTA 670914 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 670979 36 100.0 31 .................................... CAACGTTGATGAATATTGTTGATAAACTTTA 671046 36 100.0 30 .................................... ATCATGACCCCAACGTGGCCACCTGCACCA 671112 36 100.0 30 .................................... TACCGAGAGATGCTCGTCAATGCCATGTTC 671178 36 100.0 31 .................................... TTGGCGTCGTCAGTGCTCGCAGTTGATTGAA 671245 36 100.0 30 .................................... TAGTCGTGGTGACAGAATTAGACCGTTTAG 671311 36 100.0 31 .................................... CAACGTTGATGAATATTGTTGATAAACTTTA 671378 36 100.0 30 .................................... GAAGATGGTGATGCAGATGTGCTCTCTGAA 671444 36 100.0 30 .................................... GGCAGCATCAAATGATGGTTTTGTCATCGG 671510 36 100.0 30 .................................... TACATCGTGGAAAAACAGTTAAAGCTTCTA 671576 36 100.0 30 .................................... AGCTCTCGTCCAAAGAATGGACCATCTTAA 671642 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTCGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 910929-911682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUH010000001.1 Streptococcus thermophilus strain 24855 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 910929 36 100.0 34 .................................... AAAGCTTCAAAAAACATATCGTAAGATTTACGGA 910999 36 100.0 36 .................................... TCCACTCAGATTTTTCATTCTTAACAGTAACTTTAA 911071 36 100.0 35 .................................... ATATTTTTTTAAAGATCTAAAATATTGTGCTTTCT 911142 36 100.0 34 .................................... CCATAAACGTTACCCGTGAATACTGCTTGATTGA 911212 36 100.0 41 .................................... ATTGATTGCTTGATACCATTAACGATCTCACTCTGGTAATT 911289 36 100.0 35 .................................... TTTCCAGGCATATTTTTTATAAGTGACGTTTTCCC 911360 36 100.0 36 .................................... TTTTGATTAGTCTTTCTAACATTTCTATCCATTTCG 911432 36 100.0 35 .................................... TCTTTCTTGATAATATTCAAAGATATTGAAATTAG 911503 36 97.2 38 ......A............................. CGTTTGTTTAATTGCAATAATGCTCGCAAACTATCAAG 911577 36 94.4 34 ......A..........T.................. GCTCCTACCCATTGTGGCTCATTCATTTGCTTTA 911647 36 80.6 0 ......A.......................TTTTTT | ========== ====== ====== ====== ==================================== ========================================= ================== 11 36 97.5 36 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTTGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1390017-1387470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUH010000001.1 Streptococcus thermophilus strain 24855 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1390016 36 100.0 30 .................................... ATGGTATTGGGTGTTTTCTCTTGCAAAGTT 1389950 36 100.0 30 .................................... ACCATACAATATCATGGTCTCAACCGATAA 1389884 36 100.0 30 .................................... GTAATTGCCCGTGTCGTAAAAAAGATTCTA 1389818 36 100.0 30 .................................... CGATAAAGCTAATATGTATAAAGAAGTCTT 1389752 36 100.0 30 .................................... TTTCTCTTTTTCAGCGCAGTTTAATGGTTC 1389686 36 100.0 30 .................................... TATCGATGGCAACGCTGATTCCCTGTACAA 1389620 36 100.0 31 .................................... CCATTACAGACACAGGGCAAGGTGGGTACTA 1389553 36 100.0 30 .................................... ACCAATTAAACGTAATAAATTAGGTAGAAC 1389487 36 100.0 30 .................................... AGACTACAATATTGTCTTAATTGGCGATAC 1389421 36 100.0 30 .................................... GGCGTAGCAACACAATTCAAAGAGATTGAC 1389355 36 100.0 30 .................................... CATTACAACAAAGGGATAAGCCGCGCCTTC 1389289 36 100.0 30 .................................... TCAACGTGTTACGGTTCCTACTAACCCTTA 1389223 36 100.0 30 .................................... AATATAGCGTCTGAAGTCGGAATAAAACAA 1389157 36 100.0 30 .................................... CGAATCAAAGTCGAAAGAATACGATGCTAG 1389091 36 100.0 30 .................................... TAGTCGTTCAGCAATTACTAGGGTTAGAAA 1389025 36 100.0 31 .................................... AAAACGGTTCTGAATATGAGTATCTCGTTAA 1388958 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 1388892 36 100.0 30 .................................... TCTTGGAGTTCTCTTTGACCGCAAGGCGCT 1388826 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 1388760 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 1388694 36 100.0 30 .................................... TACGGAATATTTAAATAATGTTGATGGTAT 1388628 36 100.0 30 .................................... CATTCCCATCTGTGTTCAAAACGATAGGGT 1388562 36 100.0 30 .................................... AAAAATAATCTTTTATCAGAGATTGAAAAA 1388496 36 100.0 30 .................................... CGAGTCAAAGTCGAAAGAATACGATGCTAG 1388430 36 100.0 30 .................................... AACAGCAATTAACACAGTATATACAGAACT 1388364 36 100.0 30 .................................... AACCTTTCAGAAAGAGCTCATGTAGCTATC 1388298 36 100.0 30 .................................... TAAAGAAGACATTCAAGTTAATTATGAAAA 1388232 36 100.0 30 .................................... TATTGACCGCTTCGATGTTGTTCAAACAGA 1388166 36 100.0 30 .................................... TTTTTAACTGTGAAGGAATTAAAGTGGAAG 1388100 36 100.0 30 .................................... AAGCTATATAAGGTAATTGAACCTCATACA 1388034 36 100.0 30 .................................... TCTTCAAAGACTGATCTGACGTGGTCAGAT 1387968 36 100.0 30 .................................... AAAAACTAACTCAACTTATAATGTCATAAT 1387902 36 100.0 31 .................................... AAAACGGTTCTGAATATGAGTATCTCGTTAA 1387835 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 1387769 36 100.0 30 .................................... TCTTGGAGTTCTCTTTGACCGCAAGGCGCT 1387703 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 1387637 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 1387571 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 1387505 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTTGGTTGACATCTCCTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAGGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGATCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCACATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //