Array 1 18981-22493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGN010000005.1 Porphyromonas levii strain DD27 JD4_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 18981 30 100.0 36 .............................. TTCAGGATAGAGAGCGTAGATATACGGGCACTTTAT 19047 30 100.0 36 .............................. CTCTATCGATGGGATACGAGAATGTAGATAGCTTCA 19113 30 100.0 36 .............................. CTAAGGCACTGATGGGTACGCTTACACTTGGATTGT 19179 30 100.0 36 .............................. AGGTGTAAAGAGTGGTAAGTATCCTAGAGAGCACTC 19245 30 100.0 36 .............................. ATGAGTAATAACCCCGTCTTGCTTGTCGATGTGGGG 19311 30 100.0 36 .............................. TATCTTGGTTATGGCTACGGAAAAGGCGGCAGCGAT 19377 30 100.0 36 .............................. GACTTGCTCACATCTGGGTCTATTGCAATGATAACC 19443 30 100.0 34 .............................. AGGCTGCACCGGCAAAAGCACTCACCGCATCGGC 19507 30 100.0 36 .............................. ACAGCATACCTACCACACCCCGATGACCTTAAAGGC 19573 30 100.0 35 .............................. GCATGTGATAGATTGTTATACTTCTCTACCCATCC 19638 30 100.0 36 .............................. ATCTCCACGCTTGTCGTTGTCTCCGAGCCTTGGATG 19704 30 100.0 36 .............................. TCCTTTGTCTCGGTGTCCTCGTGTCTCGCCCTTTTG 19770 30 100.0 37 .............................. TATCTGCTGCAGTCTTAGATCTTCGTAAGAGGTTTCA 19837 30 100.0 34 .............................. TTCTCAGCGCCCTCTTTACCATCCTTTACCACAT 19901 30 100.0 35 .............................. TAGCTTCTTAGCTATTTCTACCTTTTTTGTTAGGT 19966 30 100.0 36 .............................. CACTCATCGTCTGCAATGCTTCTGGCTTAATGGCTT 20032 30 100.0 37 .............................. CTATTGACGTAAGCTGAACCGTTATACACCCACCAGT 20099 30 100.0 35 .............................. TTATGTAGTATCTCCATTGCCATGCGGTTTAAGTT 20164 30 100.0 35 .............................. GCATTCTTCGCATACAGCTGTTTCCCCTCATCTGA 20229 30 100.0 35 .............................. TACACATAGCACTCAGGGTGTCATCACTCACAGGG 20294 30 100.0 38 .............................. GAGCTAATTCCAGTTATACCACGCTCATTCTCTCTAGC 20362 30 100.0 36 .............................. TAGTAAGGTGCATTCCTATAAAGGATTGCATAGACC 20428 30 100.0 37 .............................. TAATCTCACTCATCACACAATATCTAACAGCATCCTG 20495 30 100.0 36 .............................. ACGATAACGAAGAATAAGCGCAACAACAAGACGTAC 20561 30 100.0 35 .............................. AGATAAAAGACACGGTGAGAGGTAACGGCACCTCT 20626 30 100.0 35 .............................. AAGTTGGTCTTGATGCTTATTGTGTGCTGACCCTT 20691 30 100.0 37 .............................. TAAGTATATATAAATGTATTCGTCAATCCAATGCCGT 20758 30 100.0 36 .............................. AGGCTATAACCTTTTTACAGCAACCCACCAGCACCG 20824 30 100.0 35 .............................. ATGGAATGTCCGTTACCAACCCTTTAAGGGATTTA 20889 30 100.0 34 .............................. CTATGAGTACCGCTACGAGCTTGGTGGTGCGATG 20953 30 100.0 36 .............................. CCTACATCTACGACCGCTACGGCATCCCTAAGCCAG 21019 30 100.0 37 .............................. GAAGGAGATACGATTCCGTAACAACCTCGTGCATCTG 21086 30 100.0 36 .............................. ATAGAGCCTTGAGCATAACCTCTACAGCTCTAACCG 21152 30 100.0 36 .............................. TCTCGCTTTTTACATAGTAGTAGCTATTACCCTCGA 21218 30 100.0 35 .............................. TAATGACGGAGCAGACCAACCGACTACTGCGCATT 21283 30 100.0 35 .............................. CCAGCTGCCGAGGGGTAATAACGCTCTCAAAGAGG 21348 30 100.0 36 .............................. TAGAATAGCCTCCTCCTGAAACCGTTTCGTTAACGA 21414 30 100.0 34 .............................. AAGAGAGTGGCGCAAAGTACATGGAGTGACGAGA 21478 30 100.0 36 .............................. TAGCTCTTATCCATCTTCGCGAGCTCCTTCTGCAGC 21544 30 100.0 36 .............................. TGATTATGTTTTGTGACTCCCTCGCCCCCTTTCTCA 21610 30 100.0 34 .............................. CTCGTTGCTCTCTGTGCTGCTCTCTTATATCCTC 21674 30 100.0 36 .............................. TCAGGAAACAAAGAGCCTTGCACAAATCAACCACGT 21740 30 100.0 36 .............................. GTGAGAACACGCATCAATCTGCCACCTCCCAAGGCT 21806 30 100.0 36 .............................. CATAAGAGTTAAGAGGGATATCAATAGGCTTATCAG 21872 30 100.0 34 .............................. TGTGATAGGTACGGGTCAATTAGCATGTCATCGT 21936 30 100.0 37 .............................. ATTGTCGTGACTCCAAAGCATGACGGGATTTTTGAGG 22003 30 100.0 36 .............................. ACGTTAATCATTATGCCACGCATGTAGAACTTATCC 22069 30 100.0 36 .............................. AATGAGTATGCGAATGGCGTCTCCGTCAAATCAAAT 22135 30 100.0 36 .............................. CATAGAGGTACAAAAGCGTGTCAATTACCTCTACAA 22201 30 100.0 35 .............................. CTTATACTTCTTTGGGTCGCTGCTGTCCGCTGGCA 22266 30 100.0 37 .............................. GATGTAGAGAGACTTCTATTTGAATACGATTACAAAA 22333 30 100.0 36 .............................. ATCGCAAGTACCTGAGTATCCACACTCTCATCCACG 22399 30 100.0 35 .............................. TTTTATCCTCTCGACTTGAGTTCTTGTTGAAAAAA 22464 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 54 30 100.0 36 CTGTTAATCGTACCATACTGGAATTGAAAC # Left flank : ATAATATTTTCATCAAGACAGGAGGGGTGGTTAGACAAAGAGATTATGGGAATTGAGAAAGCATCTACCGATAATTTCTTGTGAGTATTTTCCTATTTCGAATTACACGCCAATGCGTAAGGATGATAGAGATCATAGACATTTCGAAAACTAATAATATCTTTGTTTGGGTCGCATCAGACTAATAGATGTAAATCATGGTTAGCATTTTAGTGCTCTGTAGGACAGTTCCCATATCATACAATATGTGGTGCGCATAAATTGCTCTATAATGATGGGTTATTCTCTAAATGTCTGTCGATACTGGTGTTCACTAGTATTTTAGACGGTCTATGAAAATAGGAGGAATATTATGTTATTGATAATCAGTAGAATGGACTGTTGTCGTAGGTGCACTCTTATTATACGATTAGGGTTCGACGACATCTTCCAAGCAAAAAGTGCCAAATAAATTTTCTAACAGACTTGTAACCAATGATATATTATAGTAAATTTGACGG # Right flank : CTATTCGTCATCATCACGCACCTTATGTTCGATAGTTCTGAGAGATGGGGGGATTTGAGAGAGGGGGAGTGGTCGAATTCTCTAGCGCGAGCGGGGAAATTTATCTCTAGGAATAAAAATATTTATTCCTAGAGATAAATGTTTTTATTTGTGCAGAAAAGTAAATTTATTCCTAGGGATAAATTTGATGGTGAAGTAGACTATTTTTTTGCTGCTGTATATCAAGCGCTTGGGTGAAGGGTATTGCGCTGTAAATTGGTATATTTGTACGCTAATGTATAGGTGTGTATGAAGCTAAGGACTGAGGATTTAGTAAAGAAATATAAGAGTCGTACGGTGGTGAACCATGTCTCTATCGAGGTGGAGCAAGGTGAGATCGTGGGGCTTCTGGGGCCTAATGGCGCTGGGAAGACGACTACTTTCTATATGACGGTGGGGTTGGTACAACCCAATAATGGTCGGATTTTCTTGGATAATCGAGAGATTACCAAGGAGCCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //