Array 1 1975259-1974512 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LDJD01000001.1 Listeria monocytogenes strain L64 Scaffold_1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	=============================	======================================	==================
   1975258	    29	 100.0	    37	.............................	AGCGTTTTTCTTTTTCGCTTCATTTGATAAATCTTCC 	
   1975192	    29	 100.0	    36	.............................	AGTATTTACTTAGACAAACGCGCTCAAATTGAGCAT  	
   1975127	    29	  96.6	    38	................T............	ACAGTCAGTTTGTGCTCATTCACTTGAACTGCATCTTT	
   1975060	    29	  96.6	    37	................T............	AGCGCAACAGGTGCCATATACAAACTGCCTTTTTTTC 	
   1974994	    29	 100.0	    37	.............................	GAACCAGTAAGCATCATATTTTTATGAATTGCTTTTA 	
   1974928	    29	 100.0	    36	.............................	GAATTATTAGAAAAAATGAAGCAACAAGGTATTGAA  	
   1974863	    29	 100.0	    36	.............................	TTTTACATGGGAGTCAAAAGAGCAACTTAATATACT  	
   1974798	    29	  96.6	    34	................T............	GTTGGTAGGTTTAACCAAAGATGATCACCATGTC    	
   1974735	    29	 100.0	    34	.............................	ATGTCCCACTGCTCAATTTTTAACGGGACTCCAG    	
   1974672	    29	  96.6	    37	................A............	TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 	
   1974606	    29	  75.9	    36	......T.C.A.C...CA...T.......	GAAGAAACAGCAAAATAACCAAAAGTAATGACTTTC  	G [1974582]
   1974540	    29	  79.3	     0	......A..T....AGA......A.....	|                                     	
==========	======	======	======	=============================	======================================	==================
        12	    29	  95.1	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                      	       

# Left flank :   GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCTGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGGCAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGTGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAAATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG
# Right flank :  GAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT

# Questionable array : NO	 Score: 5.89
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   GTTTTAGTTACTTATTTTGAAATGTAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [15-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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