Array 1 1192785-1189517 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDOI01000010.1 Listeria monocytogenes strain A41 contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1192784 29 100.0 34 ............................. CCATCCACGTGGACGGGACTTCTTTTACATCAAT 1192721 29 100.0 36 ............................. TCAGCAAACCAATCCATTCAAGACGCCTTTGTGTTT 1192656 29 100.0 35 ............................. TAGTATCTCACTTCAAAACTATCTGTGTCACTATT 1192592 29 100.0 36 ............................. CAAGAAGCACGTAAGATGTTTGTAGCACCAGACAAC 1192527 29 100.0 38 ............................. CAAAAAGAAGTCGTATCTGAAAATAGCAAAGCACCTCA 1192460 29 100.0 37 ............................. GACACTCATTTTTGCTGCTTGCTTACTAGTGACCTTT 1192394 29 100.0 36 ............................. ACTGATAACCCTAATTTTGTAGCAATTACTGAAAGT 1192329 29 100.0 34 ............................. CCTGAAATGGGGGCTTTTTTGTGATGAAAAACAC 1192266 29 100.0 35 ............................. TGGTATAAATCTAAAAATACACAAGTTGTAAATGT 1192202 29 100.0 35 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAA 1192138 29 100.0 36 ............................. CTAAAAAAGATTGGCAGAATGGAAATGTGTATGTGT 1192073 29 100.0 34 ............................. CCATTACGTTTGCCTTGTTGTTAAAGCTTGCAAC 1192010 29 100.0 35 ............................. AGCTGTAGCACCTTTCTGCAATCTTTCAGCCTCAT 1191946 29 100.0 35 ............................. AAAGTAAATGCCGTAGAAACGTCCTCACAACCACA 1191882 29 100.0 35 ............................. ACAAGTGGCTTAATATAAAACGTTGGTGCTGTGGG 1191818 29 100.0 35 ............................. TGATAACCGTCAAATAAGTCAGTGTCAACTTCGTC 1191754 29 100.0 35 ............................. GTTGTTTTTTATGTTTAGCATCCATAGTCGTAAGG 1191690 29 100.0 36 ............................. TTCGAAAAGTCTGTTTTGCCCTATGTCTAATCCTTT 1191625 29 100.0 34 ............................. ACATTCGAAGTGGAGTGGCAACAAAAGCCTTATA 1191562 29 100.0 37 ............................. AAGTTAATTATTGAATGCTATCCAGAAAGAATAGAAG 1191496 29 100.0 36 ............................. GTGCTTAAAACGATGACAAAAGTAGGAATAACATCA 1191431 29 100.0 36 ............................. TTGCTTATAGAAGCTTATTTGTCTATTATTACCAGC 1191366 29 100.0 36 ............................. GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT 1191301 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 1191235 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 1191171 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCTGTTTTCAATTATT 1191106 29 100.0 35 ............................. TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT 1191042 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 1190978 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 1190913 29 100.0 36 ............................. ATAGATTAGTAGGGAAATAATATGTAATGGTTACTG 1190848 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 1190782 29 100.0 36 ............................. CTTCTTAACCCTTTAACACAAGCGCAAGATGGCTGT 1190717 29 100.0 36 ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 1190652 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 1190588 29 100.0 35 ............................. TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC 1190524 29 100.0 37 ............................. CTTGTTAAGTCCCCACTTCCATTAAAATCGTAATTGT 1190458 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 1190393 29 100.0 37 ............................. ACAATTAACACATTGTCAGTTCTGGTCTGGTATGTTT 1190327 29 100.0 35 ............................. TTGTTTATATGCACATAAATTTCGCGCATCCATAA 1190263 29 89.7 34 CG...T....................... TTTATACGTATGAGTCCGTCATATCGCATATTTA 1190200 29 100.0 36 ............................. AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT 1190135 29 100.0 38 ............................. CTCTTCCACTTTTGCTGCTTTTTCCGCATCTGGTACAA 1190068 29 100.0 37 ............................. ATTACTTAATTCTAGTTACGTTGCTGCGTTTACTTCT 1190002 29 100.0 35 ............................. AAATTTTTTGTTGATAAGCATGCAGGAGCAAATAA 1189938 29 100.0 37 ............................. CAGTGATTATGCTAAGACCTACACAATCGTTATCACT 1189872 29 100.0 36 ............................. AGAGAAATCTCAAGAGCCAGCCAAGCAAGAGACATC 1189807 29 100.0 36 ............................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 1189742 29 100.0 37 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA 1189676 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 1189612 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 1189546 29 93.1 0 .......................C....C | A [1189521] ========== ====== ====== ====== ============================= ====================================== ================== 51 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCCACAACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGTGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGCTTCTGCCATTCCAGCTCCAGCAAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1209433-1209079 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDOI01000010.1 Listeria monocytogenes strain A41 contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1209432 29 100.0 37 ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 1209366 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 1209303 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 1209239 29 96.6 37 A............................ TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 1209173 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [1209149] 1209107 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 92.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTTCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATTGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCCAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCATTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGAGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //