Array 1 32887-34195 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUU01000006.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001690 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32887 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 32948 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 33009 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 33070 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 33131 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 33192 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 33253 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 33314 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 33375 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 33436 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 33497 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 33558 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 33619 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 33680 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 33741 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 33802 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 33863 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 33924 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 33985 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 34046 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 34107 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 34168 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50902-52212 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUU01000006.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001690 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50902 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 50963 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 51024 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 51085 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 51146 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 51207 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 51268 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 51329 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 51390 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 51451 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 51512 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 51573 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 51634 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 51695 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 51756 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 51817 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 51878 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 51939 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 52000 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 52061 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 52122 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 52183 29 93.1 0 A...........T................ | A [52209] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACACCCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //