Array 1 7568-7271 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZFH01000011.1 Staphylococcus warneri strain SNUC 4140 contig011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 7567 33 100.0 33 ................................. AACTGACAACTGGTTATTATGTGAATCCAACTA 7501 33 100.0 33 ................................. AACTCTAAATTATTAAATATACCATTTGAAGAG 7435 33 100.0 33 ................................. AACTAACATCTCATTCTGTTCCAGGTACTTATA 7369 33 100.0 33 ................................. AAACGTTACTGAACGTGGAATCGACTTCGAGGA 7303 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 5 33 100.0 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : ACAATACGGTGGCAAGTTGCTATTAATATATTTGTATCCTGAAGCAAATTTAAGTCCAAAAGAACAAATACGTTTGAAAGAGTTAATAATATCACTTGGAATTGATATTATAGTATTAACAGGGTCATTGCATTTTTTAGCTAAGGATTGGAAGTATAATAACTATATTAGATGTGATAATCAAAAAATATCATCTGAATTGGTAGATAATCTACTTTGGAATGCCCCATTAAATTTTGAAAGAAGTGAAATAGAGCAGAGTTTAAATCAATTTATATTAGCTTACCAAGATAAAATCGAAATAAAACCGATTATCTCTAATTATCAAATTGCTCAAATTATGTTATTTAGTTCAATTGATTTATATGTAGGAGTTTCATATATGCAACATTGCAATCATGAATTTATATTGAATATAGATGAGACGAAATTACCCTTAAGTATGGCTAAATATTTAGAACAGTTTGTTAAAGAAAATTAACTATAATTTTGCGCTAGAG # Right flank : GATTGGAGGATATTTATGAGTAGCATGAGGAAGCCGATTATAAAAAATATTAGTTATTCTAATGAAGAGCTAGTTAATTCATTAGGCGAGTGGCAACAGAGTGATGATTCCAAATTTTTACTCAGATATCCCACCGTCTATATTATAAATGATAAAAATAAGTCTGATCATTTTAATTTGTATGTTGGTGAAACAACGGATATCAAAAATAGAACAATTCAACATTTGAAAAATGATGTGAAGCTTAAAGACTATTGGAAATCATTTTACAGTTCTGATACGTCTTCGATGTATGTCATCGGACATCCGTTCTTTAATAAGTCTTTAACTTTAGATATAGAAAACAAGTTTATGCAATATTTGTCTAGTGTAGATGCTGTGACTTCAATATTTAATAGTAGAACAAATCAGCAAAATGAATATTATACTTCTGAAAAATTAGATGAAATATTCACAAATATTTGGCAACAATTACATAAAGAGAATAGTAAACTTTTTCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 13542-13245 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZFH01000011.1 Staphylococcus warneri strain SNUC 4140 contig011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 13541 33 100.0 33 ................................. AACCCATCGAGCTCTTTACCAGTTGCACCAGTC 13475 33 100.0 33 ................................. AACATTCGTCTTCTATTGCCTTTGAAACGTAGG 13409 33 100.0 33 ................................. AACTCACTCCTTTCTGCAATAATGGGTGGGGTT 13343 33 100.0 33 ................................. AACGGTGTTTTTAACAAGTCTAATCCCGTATGC 13277 32 78.8 0 ...........T........G.A-.....AA.T | T [13247] ========== ====== ====== ====== ================================= ================================= ================== 5 33 95.8 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : AAGGGTTATATACAGACTTTGTCATCGTTAATCAACAAGGTCATCGTGTTCGACCAGGGCAAGGCTATGTACATCATGTAGCAGTCAATCTTCCTACAGATACAGACTTAAATGACATTTATGAAAAAATAGCACGACAATCCAACCCTAACTCCGGCATTATCGATCGATACTTCTTTAAATCATTATACTATCGACATAACCAAATACTATTTGAATTTGCGACAGCAGAGCCAGGATTTACCGTTGATACACCCGTCGATAAACTAGGTCAACAACTCAACCTCCCCGATTTTCTAGAGGACAAAAGAGACGAGATTGAAAGCCAATTGAGAGAAATATAGAGGACAATGTTAAAGCACTCGCTATTACGGCGCGTGCTTATTTGTGGTTATAAAAGTAGATTTTTATTTGTTTAAGATATATATTTAGATTATCAAGTAGATAATACGAAAAATGGATTACTAAAATTTTTAGTAGTAGAGTTTTATATGCTAGAG # Right flank : ATAATATTTTAGTTGCAATGCTATTGAATAACAATTATAATTTAATTACAGAGAACAAGTTTAGCTAACTTGTACTCATACCTAAAATTACAGAATCTACTGAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGATTTTTTGTGTTTTAGTACAACTTCTGTAGAAAAAATATAAAAAGTAGTGCCACGTTTATTGGTTTTAAATTATAATAAAATAAAACAAATAAGGTGGGTGTAAACTATGAAAGAAAAATATATTTTGGGTTTAGATTTAGGTATTACATCAGTAGGATATGGAATTATTAATTTTGAAACTAAAAAGATTATAGATGCAGGCGTTAGGCTTTTTCCAGAAGCAAACGTAGATAATAATGAAGGTCGTAGAAGTAAAAGAGGATCTAGACGATTAAAAAGGAGAAGAATACATAGATTAGATCGAGTGAAATCATTACTCACAGAATATAACTTAATAAATAGAGAACAAATA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //