Array 1 123447-124178 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016491.1 Lactiplantibacillus pentosus strain BGM48 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 123447 36 100.0 30 .................................... GATCTAAGTCATGTCGCGGGGTGGTTTTTC 123513 36 100.0 30 .................................... ATTTACAATTGTAATCAGGGTACGCGCCGT 123579 36 100.0 30 .................................... TAATTATTTGCAAAGTGGCTGGTGTAGACC 123645 36 100.0 30 .................................... ACGGCTTTAAGCTTGTGCTCGTGGACGTAT 123711 36 100.0 30 .................................... ACTTATGTACCAGCGATTACAGCCGTTAAT 123777 36 100.0 30 .................................... TTGACGGTAGTAAAAACACCGGTACTTGCA 123843 36 100.0 30 .................................... CGGTGTTCGTTAACGACGGGCGCCGCGTTC 123909 36 100.0 5 .................................... TTTGA Deletion [123950] 123950 35 77.8 30 CG..GT....-..T....C.T............... CCTTGCTGACGGTAAACAGCGCACCAGATA A [123968] 124016 36 100.0 30 .................................... TTTACCTGCCGTATACGCCTGATACTCCAT 124082 36 94.4 25 .......................G..A......... AGGATCGTTTCGACCTGTCATCCGG 124143 36 72.2 0 ....C.G.C...G.....T.T..G...T.G.....T | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 95.4 27 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCCGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGAGCCATGATTGCCAAAGTAATGGAAGCCAGTTTTCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTGGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGACATCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGCAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : TAACCCCCGTGTTACCGTACATCTTGAATAGTAGTCACTCCCCCTCAACCCCAGGCCCACCAAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTCGGTAAACCAAGTGCGGTCAAGTAGTCGTAGGCGAAGATTCCGAGTCCTGAAATCAGGAAGGAA # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 2130581-2131090 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016491.1 Lactiplantibacillus pentosus strain BGM48 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 2130581 29 100.0 32 ............................. TTATGGACACTGTGCTATCGCTGCCACAACAT 2130642 29 100.0 32 ............................. GATGTGCCCATCTACTACTTGATAAGTTCTCG 2130703 29 100.0 32 ............................. GTTCATTTTGCTCGATATTTTTCGTTGGTTTT 2130764 28 86.2 35 .....A.........A..A......-... TTAACGAAACCGTATTCTGCTGATTTGTCCTGGCA 2130827 29 86.2 33 ..G........A...A............T TAACACGCCGGTAGTCCCGTTTTTGAGGGATTG 2130889 29 86.2 32 ..G............AT....C....... ATGACTGCGCACTATACTGAGTCAGTGCGACT 2130950 29 75.9 32 ..T.....T......A...AA.....T.G AGGGGCACTCTCGTGAGAAGTGTAGACGCTAG 2131011 29 79.3 22 ..G...TT...........A...C....T CGCTGAATCGATATCCGCCATT Deletion [2131062] 2131062 28 75.9 0 T..........A...A......A.-..TT | C [2131083] ========== ====== ====== ====== ============================= =================================== ================== 9 29 87.7 31 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : ATATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAACTGGAACACCAGCGATAAACGCTTGTACGGCGTGAAATATATGGCTAGTCTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGAATGCTCCCCAAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGAGTAGCAAGCTATTGGATTGATTTGTTAAAATTCCGGATACAGGTCAAACATTCACGCCTATTAAACGTGGTTGTAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGTTTTGTTGCGTTTTATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAATCAGCATTACTATCGCCTCTAATATATACTGGGATATTTCAGCATTTATACAGAGCGATGAACAACATCACTTCATCAACAGAGCAATTTGACTTCTATGAGAACCAACGGCAAAAAATTTAAGTTCACACCACCAATCTTCCTTGTGAATCAAGCTTCCATTACACAAACAGTGCATTTCTCAGATGTGTTCTAAATTTTTAGTCTTTCTAACTTATTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTCTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATAGTTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCTTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGTATT # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2133708-2134102 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016491.1 Lactiplantibacillus pentosus strain BGM48 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2133708 29 100.0 32 ............................. AATTTACGCTATCTAAGTTTATCAAACAAAAT 2133769 29 96.6 32 ............................C GTGAGAACAGTTCACCACTCCATGAATCCCAC 2133830 29 100.0 32 ............................. GTGGCAAACAACTGGACGCTAGCCTTGGGTGT 2133891 29 96.6 32 .........................A... CGTTTCATCAAATTTGTCTCTGGGAGGGTTTA 2133952 29 79.3 32 ..A.......T.C..A.........A..C CATATTGATTCAAGTAAGGTACGTCAAGCTAC 2134013 29 79.3 32 ..A.......T..C.A.........A..C GAGCTACTGAGGAACTGGAGGAGAAACTAGAT 2134074 29 75.9 0 T........A.A...A....A.....TT. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 89.7 32 CTGTTCCCCGCGTATGCGGGGGTGATCCT # Left flank : AGTTATTTGTGCGTGGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATCTAGACCTCACGATTGTTAAGCGCTTACAATTTATTGTTAATATTGCTGACAATCGTGAATTATACTGACAAGAAATCATCGACTTTCATCCGTACATTTTCGTCAGAACCCTAAACTGCTTGTAAGCGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTAATTCTATACTTCTAATATTAGCATTCAATGTTTGAATAAACATCTATTTTTGGAAGGACTTCGATGGATTTTTGATAAATTATGACGACTAGTTTGTATCAAGACAGTCTGATATGTCCAGTTTTGAGGTTTCCCAATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGAGACTTAGCCAATTTTGAATTGTTGATATACCGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGGCAAAGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATATCCCGGATACTGGGATATTCCTGGTGGTTTAGCCATAAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTGAAAATTAGCAGAATTATTTGGGAAGACTCAGTTCTTGATACAGCAAAAATGCGCGTGTTTACAACATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTATTTTTGTAAATTCACGGCAAACTTTGAATAAAGTAAAGGTCGTACCGTATTTAGAGAAAGTACTGTTGCAGTTTCTATAGATTAGGGAGAGTTGTACGGTGATAACTACACTTGAATGCGCATAGAAAGAATTTATAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2406288-2407105 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016491.1 Lactiplantibacillus pentosus strain BGM48 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2406288 28 100.0 33 ............................ CCATGGCTAGGCCCCCTCATAGAATTTCGTGTT 2406349 28 100.0 33 ............................ TAAGATGATCGAGTATTACCAAACCAGTCACAT 2406410 28 100.0 33 ............................ TTAATCCCGCCGCGTCTTCGACCTTCATGTCGG 2406471 28 100.0 33 ............................ CGTTTGCCAGGCTTTACTGGAGTCGTTCAATTC 2406532 28 100.0 33 ............................ CACGTTTAAACTTGAGCGCGTCGCGATTCTTGA 2406593 28 100.0 33 ............................ CTGTATGGGGTCAGGTAGTACGGGTGTCAGCTG 2406654 28 100.0 33 ............................ CTAATTCACGATTCTGGTCGCTGTGGTCAAGTA 2406715 28 96.4 33 ..........C................. TAGATAGCTTGCATGAGTGTGCCGTAGTCCGTG 2406776 28 96.4 33 ..........C................. TGTTCCGTCCTTGTCGTTGCCGTGCGTGCCATC 2406837 28 96.4 33 ..........C................. TTATACCATACACCGAAAATGTGAAATAATAAT 2406898 28 92.9 33 ..........C............A.... TAATCCAGCTCCAATTGGTTGGACGTTAAATGC 2406959 27 92.9 33 .....T...........-.......... CGTGCCGGACTGCTCAACGGTCATAATGCTACG 2407019 28 92.9 32 ...........A...........A.... AATTAAACTATTTTTTGATGATACTTGCAGTG 2407079 27 75.0 0 A..-.....A.....A.A...T...C.. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 95.9 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : ATCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGGATTTTTGGCGAAATTGCCACTGTTTGATGGAAACAACTCAGAATAATATCACTAGTAGTAGTGAACCGCGCCGCATAAACAGATTTAACGGTAATTTTATAGCCATTTTTGGCTTTATCGGTATTGTATGACCATTTAGACCGGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTCGAGCGATTCGCGAAATCTTGAGAAGCAATCTTTTTTCAATGGCAATGCTAATTCAACTAAAATGATAATCACGCCATACTTTCATGGAAGATATTTTAGACAATCGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTCTACCTGCCTATCGTACTCACAAAAGTAAAACGTAGCGTTTTTGGAATCAAATCGACCAGAAGTTGACAATGAATTGGTTGTCCACGAAAAAATTAGAGTTCTTTCAAACTCATTGTTACCCTGAAACAACAGGTCATTAAAAATAATAACCACTGCTGGAGATTAGCCTATAAAATGGTTATTGCTTTGGATTATGTAATCAAGTGTTATGAATTTGAATCCGAGCTACATTTGCCAGGGAACTTTATAAAAGATAAAAATGCAATCAGGTATTTCAGAGCGCAGATTTCAAATTAGAATACCTATAAGGAATACCAAATTCATATCGGTAGTACACTATTCTTCACTAAGCTTCCTGGGAAAGCCTTGGTCATGTAGTTTACGACCATATTCGGGTGCCACTAAAAGCTAATAATTTTGGAGGAGAGTACTGAAAAATGAAAAAAGTTACAGTTTTTCTCGTCATAATCTTTGCGATTGCAATATCCATACAATAC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //