Array 1 153411-141632 **** Predicted by CRISPRDetect 2.4 *** >NC_016940.1 Saprospira grandis str. Lewin, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================ ================== 153410 36 100.0 35 .................................... ATTTCTCAGTTAGTAGGTTTGGTAAATATTGGCCA 153339 36 100.0 34 .................................... CCGACTTGAGCGGACAACCAACGACCCCACAGGA 153269 36 100.0 35 .................................... GTCACTTTTAGCTTTTCGCCTTCAGCCCATTCTAT 153198 36 100.0 35 .................................... TAGCAGAGGCTTCCCACTTGACTGACCTGTTATGG 153127 36 100.0 34 .................................... CTCAATTTTAATTTCGGGCATTACCATGCTTTGC 153057 36 100.0 35 .................................... GCCACTGCCAAGAAGCAGAAGTCTCTGTATAAAAA 152986 36 100.0 34 .................................... TTCAGCGTGGAAGCTGGCAACCTTTGACCCTTTT 152916 36 100.0 33 .................................... TTAAAAGAGCCCTCTAGGGCCTCTTTTGTTTTT 152847 36 100.0 35 .................................... ATTCCTGGCAAACTCTCATATGAGTTCCCAGCCCT 152776 36 100.0 38 .................................... TATTATAAATTCATAAGTCTATGAAATCCGCATCTCAA 152702 36 100.0 35 .................................... TCATAATGTAATAAATTTAGAGTTAATTAAATATA 152631 36 100.0 36 .................................... ATTTCTTCATTGAAATCTCAGCAGCAATCTTATCAA 152559 36 100.0 36 .................................... TACTTCGAATGTGTAGAAGCTACACATGGAAAGTTT 152487 36 100.0 35 .................................... ATCCTCTCCATCAATGTAGTGGGGAGGAATAGTTC 152416 36 100.0 34 .................................... TGACAGCTTTAGAATATTATAAGTTTATAAATGT 152346 36 100.0 35 .................................... CCCCTTGCCGAAGCGATGGCTATGGCCCTAAAAAC 152275 36 100.0 34 .................................... AGTTCTTCCAGCTCCTTATCCGTACTCGTGTGCA 152205 36 100.0 36 .................................... AGCTCTTGTTTTAAGAGAGCTTTGAAGTCATTTCTA 152133 36 100.0 35 .................................... CCCATAGGCAGGTGGCCTGTTGACCATACTGTATA 152062 36 100.0 36 .................................... TACTGCAGGCTCCTTGTATTTTCGGGCTTTGCGCCT 151990 36 100.0 35 .................................... TCTTCAATCTCCCCTAGATTTTCTAGTTCTGTTTC 151919 36 100.0 33 .................................... AGCCCAGATTGTTAAGCTACTTCAAGCAGCTGA 151850 36 100.0 35 .................................... TCCCTTTGTGGGACTCTATAATTCGAGAAAGCGGA 151779 36 100.0 37 .................................... TAGAATATTTAAGCCCAGCCGACTTCGAAACCAAATT 151706 36 100.0 34 .................................... TATATGTATTCATTTACTACTTTTTTAACTCTAT 151636 36 100.0 34 .................................... TTGTAAGTTTAGTAGAGCCCGAAGAAGACGGCTC 151566 36 100.0 35 .................................... GGTTCTTTTACCGAAACCCTAACTAAAAATGACGT 151495 36 100.0 34 .................................... AGCAAGGCTTACATCAGGTCCTCCAGGAAGTACA 151425 36 100.0 35 .................................... TATAGAATGGCTAGTAATGAGATTATGTCAAGTGC 151354 36 100.0 35 .................................... AGTGCACTCTTATTGTTAAATACCTACCTAAAAAA 151283 36 100.0 34 .................................... TAAGTATACTTCCTTATTTACTTTGTAGCTTTGT 151213 36 100.0 36 .................................... TGTTTATTGTCTCTCCAGACATACGTACCTACACAA 151141 36 100.0 36 .................................... TCGAAAGAACAAAACCCGCCGTGGTTACCGAAACTA 151069 36 100.0 34 .................................... TGTTTTATTTGCTCGGTTTTGGGGTTGAAACTCC 150999 36 100.0 34 .................................... GTTATTATGGGTAAGAAGTTCAAAGAATTTGAGA 150929 36 100.0 35 .................................... TGTTTACCTTGGCAACAAGGCGGTTCTTGCCAGAA 150858 36 100.0 35 .................................... AGGTTGTTTTTCAACCTTTTCTCTTAACAGAGCGT 150787 36 100.0 35 .................................... TTTGCAGGATAACCCAAATTACCGCTTCGAGCAAG 150716 36 100.0 34 .................................... TAGAACCAAACGGCATAGCCGCGGTCCATATCGA 150646 36 100.0 35 .................................... AACCTGGTAGCATTGGTTTCCAGTCCCTGACTCTG 150575 36 100.0 34 .................................... AATTCAGAAAAATAACTTCCACTGAAAATTGTGT 150505 36 100.0 36 .................................... AATATATTTACATTAGTTTGTGTAATGATATTATTT 150433 36 100.0 35 .................................... CTGTCAGCCTCAATTAAGGTATCTAAATGTACTTT 150362 36 100.0 34 .................................... TACGTCTCACAGTAGAAGCAATCAAAGAGCTCGA 150292 36 100.0 34 .................................... ATCCAGAACAGAGATTTGGTTTGACCAAATTCTT 150222 36 100.0 36 .................................... TGTTAATTTCATATAATTAACTTAAAAAAATACATA 150150 36 100.0 35 .................................... GGCTGGCAAGTGTGCCATCTTGGTATAGGTCCAAG 150079 36 100.0 33 .................................... CGCTTTAAAAAATTTATTGATCAGCTGGCGGCC 150010 36 100.0 36 .................................... ATTCTAGTTCACCTAAAATTTATACATTATTATAAT 149938 36 100.0 36 .................................... TTTTAAAAGATGTTTGCTAGAAATGTACCGGGCCGA 149866 36 100.0 35 .................................... ACTACAAATGCTCCATTTAAAAAGTCAGTTGCTGT 149795 36 100.0 34 .................................... TGTTATCAGAAGCAACAAAGCTTCTGATCGTAGA 149725 36 100.0 35 .................................... AGCTTCTTTTCTTTTTCCTTTTTTATCCAGAAGCT 149654 36 100.0 35 .................................... TATGAGAAATATGCAGTACAATATAAGAAAGGTAG 149583 36 100.0 34 .................................... TATCTCCAGAAATACCTTTCGAGTTATTTAAAGA 149513 36 100.0 34 .................................... GATGCTGGAGAAGTATTCCTCCAGATCATCTTTC 149443 36 100.0 33 .................................... TATTCTATTTTGTTCTCAACTGAGATCAGATAA 149374 36 100.0 33 .................................... AGTCTTATTCAAAGTTTCAGATTCTGCCATTGA 149305 36 100.0 34 .................................... TTTATAGTTCTTAATGAGAGACATTCCTTCACCT 149235 36 100.0 34 .................................... GGCCCAAAATAAAGGCCTCGTGTTCGGTCTTAAA 149165 36 100.0 34 .................................... TTCTCAAGACTTGTGGTCCAGAAGAAGGCTTTGA 149095 36 100.0 34 .................................... TGGCAATGAACTCGACCTCGCGGTCGAACTCTCG 149025 36 100.0 33 .................................... GGCTTAGGAATTTAGCCTTGCTGGCTTTAGGGC 148956 36 100.0 35 .................................... TGCTCTTTTCAAGTTGGCACAGCAATACAATAGTT 148885 36 100.0 34 .................................... AACAAGCTTAACCGTGACATTCATAAACGGTAGC 148815 36 100.0 33 .................................... AACTCATCTAATTCTAGTGGGTAGTCCAAGTTA 148746 36 100.0 35 .................................... AACCTTAAAACGAAGCTATGTTTAACGAAGAATTT 148675 36 100.0 35 .................................... CATTTTGCAAGAAAAAAATAAAAAAACCTAGGAAA 148604 36 100.0 36 .................................... CGTGGTAGAACACGCCATTTTTGAAATCGTAATAGC 148532 36 100.0 35 .................................... GTTGTACGAGATTACTCAAGCTGTGAGTTGCGTAT 148461 36 100.0 36 .................................... AGTCATCTGTAAGTCTATTAATATCGGAGTCAAACT 148389 36 100.0 35 .................................... ATTTTTTTCCTGCAATAGCTCACGGATCCGAGAAA 148318 36 100.0 36 .................................... TTTTAAAAGATGTTTGCTAGAAATGTACCGGGCCGA 148246 36 100.0 35 .................................... TACAGGTGCTGCTAGCTTGGTTTGGAAAAACCTGA 148175 36 100.0 35 .................................... ATTTTTTTCCTGCAATAGCTCACGGATCCGAGAAA 148104 36 100.0 36 .................................... TTTTAAAAGATGTTTGCTAGAAATGTACCGGGCCGA 148032 36 100.0 35 .................................... TACAGGTGCTGCTAGCTTGGTTTGGAAAAACCTGA 147961 36 100.0 34 .................................... TGTTTAAGAGCAAGCCGCCCTTCCTTGTTGCAGA 147891 36 100.0 36 .................................... CGTCAGAAAGCTCTTTTCCTCGAAATTCGTCGGGGA 147819 36 100.0 36 .................................... CGTCAGAAAGCTCTTTTCCTCGAAATTCGTCGGGGA 147747 36 100.0 35 .................................... CTCTCGACAGAAGAGTGGAAATCCACTATAGTGTA 147676 36 100.0 34 .................................... TCATGAGAAATCTACTTATTTCAGAGCGTTTTAA 147606 36 100.0 36 .................................... ATCGCTAGAGAACTTTGATGCGAAAACGATGGGAGT 147534 36 100.0 36 .................................... AAAAGGCGTATCATCTCCAAATTGGCCTCCCTACGA 147462 36 100.0 34 .................................... CTCAGACATGTACTGGGCTACAGCAAACGAAAGC 147392 36 100.0 35 .................................... CACGTTCTTCTTCAGGGAGTTTACTGAACCAGTCT 147321 36 100.0 35 .................................... CAGTGACCGAGAGAGAAATGCTCCCTCGGTACAAT 147250 36 100.0 35 .................................... ACTCGACTGAGCGAGTATAAACAGCCATTTAGGCT 147179 36 100.0 35 .................................... AGATGAAGATAGAGGGCTGCGATGAGTTGGTGTCT 147108 36 100.0 36 .................................... TTTTTGACCCCCGGGGGTGTCTGACAAAAAAAAGTT 147036 36 100.0 36 .................................... TTCAAAAAGAAATTAAAAGAATTGAAGCTACTTTAA 146964 36 100.0 35 .................................... CTCTATCAATGCCTTAAGAACTAAAAGGGCTCAAG 146893 36 100.0 34 .................................... CTCCTTGAGGTCTCAATCCGAAAATAGATGCTAC 146823 36 100.0 35 .................................... TTGCGTAAGTCGGATCCTAAGCGAGTATTTACTCG 146752 36 100.0 34 .................................... CTCCTTGAGGTCTCAATCCGAAAATAGATGCTAC 146682 36 100.0 34 .................................... TATTCATTCAAAATTTCAACAGATATAGTTTCTA 146612 36 100.0 34 .................................... CGTGAATTAGAAGAATTAAAAAACAAAGTAGTAG 146542 36 100.0 35 .................................... ATTCACGGTAGGCCTCTTTTTTTCGGTAAGCACCA 146471 36 100.0 34 .................................... AACATGTAGTGATCTACCAGAAGATTTCTTAGAA 146401 36 100.0 34 .................................... ATTATGGGCAATACAAGGGATCCATCGTTAGAGC 146331 36 100.0 35 .................................... AGCTGACATATTAACAGAAGCTGTCAAAAGAGGAG 146260 36 100.0 35 .................................... TTTCTCTAATTTGCATTGAGTTCGTCTTTACAGTC 146189 36 100.0 34 .................................... TCTCCGAAAGTAATCAAGATTCTTTTCACAGGTT 146119 36 100.0 34 .................................... TCTAAAGTTTTTGGGTTTGACTTAAAACTGTCTA 146049 36 100.0 35 .................................... TGTATCCAATAGACGTACAACTGCGGAGATCTGTA 145978 36 100.0 35 .................................... TGTATCCAATAGACGTACAACTGCGGAGATCTGTA 145907 36 100.0 36 .................................... TATTTGAAGATACTATAATGGTGGAAGATAAAAAAA 145835 36 100.0 39 .................................... TTTACCGTAAGAGTGATCAGCAATTACGGTAGGGTGCTA 145760 36 100.0 35 .................................... TCTGGCGCCGCCGAGTCCCCCCGATTCGGTTGGTT 145689 36 100.0 37 .................................... CTGTTCTAATACAGCTACTGTTGAATCGTTACCTTTG 145616 36 100.0 35 .................................... TACTCTCCAAGGACATCCCCCCCGTCCTTAGCCGT 145545 36 100.0 35 .................................... TACACGGACTCGAACCGTGGACCCACTGATTATGA 145474 36 100.0 33 .................................... AAATTAAATGAAGAATTAAGAGCTAAATAATTA 145405 36 100.0 76 .................................... TTCATGATGACCACCTGATTCCTAGGTATGGTGAAGATGAGAAAACGGGAAGAAAAAGATTATTAAATAACGAGAT 145293 36 100.0 34 .................................... TTCATGATGACCACCTGATTCCTAGGTATGGTGA 145223 36 100.0 34 .................................... CCATTTGCAAAAACAGAAATCCTTACGTTGTCTA 145153 36 100.0 37 .................................... TTCTTCAATATAATCACAGATGTCAACATAATTAAGT 145080 36 97.2 35 ...........A........................ CTCAGATGTCATAATGAATCTGAGGGTTGTTTTAT 145009 36 100.0 35 .................................... GTTTTACCCCTCTCCTAATAATGAGGAGAGAGGTT 144938 36 100.0 34 .................................... AATTCCTCGAAATTTTTGAATGAAATCATTTTTT 144868 36 100.0 35 .................................... ATCAATTCTATCGTAGTAGACACTACATTGTTCTG 144797 36 100.0 36 .................................... GCTCAGAGCCTAAACGCCTGTTTATACTCGCTCTGA 144725 36 100.0 34 .................................... AGTTTTTAAAGGTTCTAAAAGAAATTTTAGTTGT 144655 36 100.0 36 .................................... TCTCTCCGCTGAGGCGTGGGAGTTGGCAGGGAAGCT 144583 36 100.0 34 .................................... TTCGTCATCTGCTTGCTTGTACATTACATCCATT 144513 36 100.0 34 .................................... ATCTTTGCGGAGATTCTTCTGGAGTACGAATCAG 144443 36 100.0 35 .................................... TGGAGCAGCTCCAGCCTGAAACTACCCCTTCTCCT 144372 36 100.0 35 .................................... AATGGTATTGATTACATTTTAAGTGGTGAAATAGT 144301 36 100.0 33 .................................... ACGTATTGAGACCGATGAGTATATGTCTATAAA 144232 36 100.0 33 .................................... TGAAATGATTTATATGCTAATAAAACCTCTACT 144163 36 100.0 34 .................................... AATAAGTGGATTATTAAAAGAGAATGGGTTTTAT 144093 36 100.0 35 .................................... CTTTTCTTTTTCATCAAAAAATGACATAATAAAAT 144022 36 100.0 34 .................................... TTTCCCCGATAACACCACCATCAGTGGCATCACC 143952 36 100.0 36 .................................... TTCCTTCAAACAGTAGTCTATTGAAGTATTCAAACA 143880 36 100.0 36 .................................... TGTTATTGCTTTAGACCATGATGATAATATTGAAAT 143808 36 100.0 36 .................................... AACTTTGGAGGTGGATTTAACAATAGAGCTGAAGAA 143736 36 100.0 35 .................................... CTCTTTAAAGAAGACGCTGAACCCCTTGATTAGGG 143665 36 100.0 35 .................................... AGCTTCTAGGGGGATTCCACAAGACTCACGTATTA 143594 36 100.0 34 .................................... ATAAGAGATCTTATCAAAAACCTCAAAGTGGAGG 143524 36 100.0 34 .................................... TTGTCCATACCTGCATAAGCAACGCACTGAGCCT 143454 36 100.0 36 .................................... CTTTGAAAGCCTGCGAGGTTGCCCCCCATTTTAAAA 143382 36 100.0 36 .................................... TAGCCATAATTTGGGCCATAAAACGGCCCGTTTTAG 143310 36 100.0 34 .................................... AATAGAGGTTGCTTTTCCCCCCTTCTACATATCT 143240 36 100.0 33 .................................... AGTGTCATTTCTGCTTTGATCTGCTTTGGTTTG 143171 36 100.0 34 .................................... ATCGTGTCATTATTTTTAGCTTAGGTTGGTAATT 143101 36 100.0 36 .................................... TAGCAAATTCCCTCCAATAAGAGAAATACGCATCTA 143029 36 97.2 36 ...........A........................ ACTCCTGAACCATTTCAGGAGTGAGGCAATGGGCTT 142957 36 97.2 35 ...........A........................ TACTATGCGAATGCAGTAGAAGGCTCTGGATTGAT 142886 36 97.2 35 ...........A........................ CTATCCAGTAAAAGGCGGAAGATTTGTGATTTTAG 142815 36 97.2 37 ...........A........................ TTCTACATGTTGGCTGTATCCAATAGACGTACAACTG 142742 36 97.2 38 ...........A........................ CGGCTGGAGGAGCTGCATGAATGCCTGCTCGCCATTGA 142668 36 97.2 38 ...........A........................ CGGCTGGAGGAGCTGCATGAATGCCTGCTCGCCATTGA 142594 36 97.2 35 ...........A........................ GACTATTTAGGGGTTACTTCAATAGACCCTCCTAA 142523 36 97.2 36 ...........A........................ CTCCACGTTGAGAGAGAAGTTCGACTTCTCATCTTC 142451 36 97.2 37 ...........A........................ CGTGGCATTGGATTATTTATAATCTAGCCTTAGCATA 142378 36 97.2 35 ...........A........................ TGCCTTAGACAGCTTTAAGGGTTTAATATAATGCA 142307 36 97.2 35 ...........A........................ ACAGTTCCACACTCCAACTGCAGGGATCTTATCCC 142236 36 97.2 37 ...........A........................ TTTTTTAGCCTCTATTTCGGTATTGGCCCAATGGCTA 142163 36 97.2 35 ...........A........................ TGTTTTATATCGCCCATAGTGAGCGATTTTTTGAA 142092 36 97.2 34 ...........A........................ TCTACCATCCATTTAGGAGCAACCCATTCTCCTT 142022 36 97.2 36 ...........A........................ GTCACAATCCACGCTGGTACGCACATCATTCGGGAC 141950 36 97.2 34 ...........A........................ CTCCCCCCCCTCCCTCAATTAAATATTTAAAAAT 141880 36 97.2 35 ...........A........................ TTTTTGCGTCTAACTTAGGCAAAACGCCACTTGAA 141809 36 97.2 34 ...........A........................ CTCGACCGCTTAGGTCGTCCTCGTTCCATCTCGT 141739 36 97.2 36 ...........A........................ GACATCCGTTATTGCTTTTGATTTGCTGGATTATAA 141667 36 83.3 0 ...........A.................GCC..TA | ========== ====== ====== ====== ==================================== ============================================================================ ================== 166 36 99.6 35 ATACTAAACCCTTTGCAGGCGAAGCAGCATTGAAAC # Left flank : CATAATATTTTTCATATCGTACGGATTTAGACAAGCGGTAATGGGGGCAAAAATACGGTTTTTTTGCTGGCTCTTTGGCTTATAAAATCAAATTACTGTTAAGGACTGGGGGAGGGGCCTCCGCTGCGGCCTGCGGCCTTGCGGCGCTACGTTTCGGGGCTCGCAGGTCTGCTCGGCCCTTCAGGCTTCACTTCGTTTCGCCTTCGGTCTGGCCTTCGGCCACCCCTGCACATCGCTAGGCCGTTTGGCCTTCGGCCTGCGGCGGCTTTGCCGCCTGTAGGTCGCGGAAAAAGGGGCCAAAATTAAATTAGGAAGTATAGGAGATAAGTTTTATATTGTGAGCAGGAAATGTCTTTAGATAGTGGGAAAATCCAAATCTTAAAACTTTCTTAAAATGAAAAAAGAGCATTTGGGAGCTTTGCGGTATATTTTAGAGTTTGGTGGCTCTAATGTCGGTGAAAGCGTTCTTATGGCTTTTTGAATTATATGATAGTTTTGCT # Right flank : ATCGCCTAGGGACAAGCCCCTAGGCTAACCCAATGGAGTCAGCCCTAAAGGGCCTCAAATTGTGATGTAGGGTTTTGCTCTGTTGTTATTGCAGAGAAGGACCATATCCAAAGGCCCTCTTTAGAGGGCTGTCTGAAAAAAGCTAGCCTAGGGATAAGCCCCTAGGCAGCAGAGTTGGTAGTATTGAGATAGCTTTATTAGTCCCTCAACTTTTTCTTGGGAGTTTTGAAAGGAGGGGGAGAGAGCGAATAGAGAAGAAGCCTTTTTTGGAACTAGCGGGTTTGGACTCATGGCTAAAGCCCTTGTTCGCTATAAAAATGGAAAAGGTTCGCTCCAAGAAAAAAACAACAGTCCAACCACAACGGCAAAGAAAAATCCCCTCGAAGGAGGGGATGGCGATTTTTTCGATAGCCTAGGGCCTTGGCCCTAGGGTTCCTATGAAATTTATGGGGGAGAAAAAAAGAAAATCAAACTACCGAAGAAAAATAACTCTTGTTCAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATACTAAACCCTTTGCAGGCGAAGCAGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 2 3742956-3753501 **** Predicted by CRISPRDetect 2.4 *** >NC_016940.1 Saprospira grandis str. Lewin, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3742956 36 100.0 34 .................................... GATAGCCAATTCGAGAACGTCAAAAAGAACGAAG 3743026 36 100.0 36 .................................... GGGACCAAGCTGTAAATAGTCATACCCTCTTCTACT 3743098 36 100.0 35 .................................... TATTACCCCCTACTCTAAGGAACATAAGCGTTTTG 3743169 36 100.0 35 .................................... GGCCTTGACTCGATTTGACGCTGAAACGGACGCTA 3743240 36 100.0 33 .................................... CATTTCAACATCCCTAGCCCCATAGGTTATTTG 3743309 36 100.0 36 .................................... ATCTAAAGAAAGACAGTACAGGACAATATCCCGATG 3743381 36 100.0 36 .................................... AAAACTAATTGCTTCAAATATTTTGCTATTCTTTTA 3743453 36 100.0 36 .................................... ACCTTCTTATTTCCATCCTTTTTATCATCGTAGTTT 3743525 36 100.0 35 .................................... GACATAATAAAACAGTTAATAAGATTAATAAATAA 3743596 36 100.0 35 .................................... TCTTTAACAAAAGTTCTCCACTTAGAAAAGTACTT 3743667 36 100.0 35 .................................... TTTGCTAATTTCATCAAGCTTGCTAGAAATCTCTT 3743738 36 100.0 34 .................................... CCCACTGAAGCTCGTTACTGGTGTGCCTTATCAT 3743808 36 100.0 35 .................................... CTTTTAGTAGAACGTCTTTTTGATACTTGTGAAAA 3743879 36 100.0 35 .................................... TATTTTCCAAAATTTTATATTCGAATTTTATCACG 3743950 36 100.0 35 .................................... TATATTTTACAAATGTAAAGTATAGACTTTTTTAA 3744021 36 100.0 35 .................................... GTTCTGGCATTAGTTGCTTTGCCGCAGCAAGCACA 3744092 36 100.0 38 .................................... TAGTCATAATATATAAGTTTTTTAATAAATTAAAGAGA 3744166 36 100.0 34 .................................... AGAAATGTATATGCTCAAGATAGTTTAGATGTAA 3744236 36 100.0 33 .................................... AAGGTAGGGCCGCAACTGTCCGTCCGTTACCAA 3744305 36 100.0 36 .................................... CTATCCCAGTGGTCCCATGTCTGTATTGTTTCAGGT 3744377 36 100.0 35 .................................... CTCAGGACACAAAGGGTAGTTGTCAAGTATTATAT 3744448 36 100.0 35 .................................... TCTACCGTCATGGGTAGAATATTCATAGTGCATAC 3744519 36 100.0 34 .................................... TAGAATCTCTTCAAGGAGTTTGGAAACATCTGTT 3744589 36 100.0 35 .................................... CTTCTTCCCTAGTTTTTTTGATTAGGGCTAAGGAA 3744660 36 100.0 34 .................................... GTAAACACGCTGGACTTAAAATCCAGTGCACTGT 3744730 36 100.0 38 .................................... TTTTATTCCGTTTGATAAGTCGCTCTAGGCTCTTTTTC 3744804 36 100.0 35 .................................... ATTAGAATTGGCTCTGAAAAGACTTCAGGATTAAA 3744875 36 100.0 37 .................................... CTCTGTAGATAGTGGACTAATACTAGTAGACTAATGA 3744948 36 100.0 34 .................................... TTAAAAGTTTCTTTTTAAATTCTTCAGTTTCTTT 3745018 36 100.0 36 .................................... GGAAATACGTATTCCCAAGAATACTTGGTTATCATA 3745090 36 100.0 34 .................................... ATCCATACATAAGATATTACCTCTAGAGTGTATT 3745160 36 100.0 37 .................................... ATTTCTCTTCTCCTAGCTTAACCAAAGTTTCTAAGTT 3745233 36 100.0 36 .................................... TATAACACATAGATATATATATTCCGTTAAAAACTC 3745305 36 100.0 40 .................................... TGTAGACTGCTTTCTACTACAATAGGGCTGTTGAAGTCCA 3745381 36 100.0 39 .................................... TGTTTCTTTAGAGGAGTTCTCCATCCTCAATAAAAAATT 3745456 36 100.0 34 .................................... TAAAGGGTCTTTGATTAAATAAACCTCTTCATTT 3745526 36 100.0 36 .................................... CGTTGCCGTCAAAGCTAAGGGGCAACTAAATCACAA 3745598 36 100.0 36 .................................... TGTAGCAGACAACAACTTCTGATCCAAATGAGCCTA 3745670 36 100.0 34 .................................... ATTTTACACCGAAATAAATAAAGCTAAAGATTTA 3745740 36 100.0 36 .................................... TTCTGCCCGCCGCCTAACGTCTTGGCGGTTACCCTA 3745812 36 100.0 35 .................................... CTTTTTGCCTCTTCATTTGTTATGAATCCCTTTTC 3745883 36 100.0 34 .................................... GTCATTTCCGAGGGACTGCCTTTTGGTTTTTTGT 3745953 36 100.0 36 .................................... TGTCAAACTCCATCACAACTTGCTTGTTTGTCCCGA 3746025 36 100.0 35 .................................... GAGCCTGATTCCAGTCATATTTCTCAAACATACCA 3746096 36 100.0 35 .................................... GCAATTTAGGCACGAGAAGCCATTTGTCCAGCAGG 3746167 36 100.0 34 .................................... TGCTTGGGTGATTCGATAGATTGAGGAACATACT 3746237 36 100.0 34 .................................... ACTTTCTAATACATTATTGAAATATCTATTATAT 3746307 36 100.0 34 .................................... TTCCTGCTCAAAGTGCCGAGTTGTCGGCTGAGCA 3746377 36 100.0 33 .................................... GGTTTGCAGCGGTTGAAAATTGAGCTTGAGGAA 3746446 36 100.0 35 .................................... AGTGTTAAATTATCCTCAATGCTATCTACTTCAAA 3746517 36 100.0 34 .................................... TGCACAAAATAGCAGAAGCGGCAAACCTAAACTA 3746587 36 100.0 35 .................................... GACAGCGAGGGTAATAAACCGCATATCCAAGTTAA 3746658 36 100.0 35 .................................... TTCTTTTTTGAGTTAGCAGATTGCTTCTACTGTGA 3746729 36 100.0 34 .................................... CTTCTATATCTTCACCAGATTTCTCCCAAATCTT 3746799 36 100.0 36 .................................... ATAAGGATCTGAACCTACATAAGGCATCACTAATTT 3746871 36 100.0 35 .................................... GCGCATCATCTTCAAAAACAATATTCAGCTCAATG 3746942 36 100.0 35 .................................... CCCTTTGGGTTGGGGCTTCTTTTTTAGCCTTAGCT 3747013 36 100.0 35 .................................... TGTCATCGGTATTTTTTGGAGACATTATTAATCTT 3747084 36 100.0 34 .................................... AGCATTGAAACCCTAGTAGCCTCTGGGGTTTCAA 3747154 36 100.0 35 .................................... TACGATGTAACATTTGAGGACGGCACTATGGCTAC 3747225 36 100.0 34 .................................... TAATGGAAAAAGTAGATCTTTCTGAATTTGAACT 3747295 36 100.0 37 .................................... TTAATGTTGGTTGGTTTGAACATAGCTCTTGCACCAA 3747368 36 100.0 35 .................................... TCACATACTAAGTAAAGAGTACAAAGAACTAGTAA 3747439 36 100.0 34 .................................... GGGCTTGGCAGCTTCTCTTGCTGCGTCTGCTTCA 3747509 36 100.0 34 .................................... TGGAAGTTGAAGTTGAATCTGAGGCTGCTAAGCA 3747579 36 100.0 36 .................................... TGGTTAAAGGGAAGGTATGCTTCCCCTCCCTTTGTA 3747651 36 100.0 35 .................................... AGCTTCCATAGAAACTCTAAGATTATGTAAATACT 3747722 36 100.0 36 .................................... CTTTAACAGAAGAAGCTTCTCTTGAATTTGAAATAG 3747794 36 100.0 35 .................................... AAAGTGTGAAGAAAAAGCGTCTTTGTGTTTAATTG 3747865 36 100.0 35 .................................... TACAATTGTACCGATTCCAGATCCAAGTGCGTCCG 3747936 36 100.0 34 .................................... AAAAGCAGTTAGGAGCAATGGGCACGAACAACGG 3748006 36 100.0 36 .................................... GATGAGGGCAAGGCTCGCTTCGAAGAGCTGTGGGGC 3748078 36 100.0 34 .................................... AACTATAAATACACCTTCCTAGCAGAACTGGCTT 3748148 36 100.0 37 .................................... AATGATGCAATTCCGCACACCCTGCGCCTTAGCGCGA 3748221 36 100.0 35 .................................... CCTCGCCTGCAATTGCTGCAGAATCGCCTGCAGCT 3748292 36 100.0 35 .................................... AGTTAATTATATAACATTTTATTCAACCTATTTAA 3748363 36 100.0 34 .................................... TAAGTAGTTACCTTCGCCAATAGGGCCCCGCTGC 3748433 36 100.0 34 .................................... TAAGTAGTTACCTTCGCCAATAGGGCCCCGCTGC 3748503 36 100.0 36 .................................... GTTGCCTTTCTAGGATAAATACCTAGCAGGTGTAGA 3748575 36 100.0 34 .................................... GCTACACACCTCTTCATTTATTTGCAAACCTTTC 3748645 36 100.0 37 .................................... CACCCACAAGAAAATTCTTGCGGGTGAAAGAAATTGA 3748718 36 100.0 33 .................................... CCCTTAGTTTGTCGTATTTGCGCAGAATATAAA 3748787 36 100.0 32 .................................... ACCGCCGCCGATTTGGGCAAAGTAGAAGAAAC 3748855 36 100.0 35 .................................... CGATGATCTGCCCATGTTCATTGCGAAATGCTTTC 3748926 36 100.0 36 .................................... CCTGGCTGAACGGCCTGAGGCTCTTCGCCGTACTTT 3748998 36 100.0 35 .................................... AACCTCGGTGGTCTTATGATCCTTCGTTTATTGTA 3749069 36 100.0 35 .................................... CGATGATCTGCCCATGTTCATTGCGAAATGCTTTC 3749140 36 100.0 35 .................................... TGGGTTGTCTAACTCTTTCAAGCTGCTCGCCATCG 3749211 36 100.0 35 .................................... TATAAATGAGCATTTAACGGAAGCAAACCGTTTGT 3749282 36 100.0 35 .................................... TATAAATGAGCATTTAACGGAAGCAAACCGTTTGT 3749353 36 100.0 35 .................................... TCTGGCTTTTTGGGGCGTCTACTTTGCCGTTTTTA 3749424 36 100.0 36 .................................... TCAGTTGAAACGCCTTTTCAAATTGAGCAGGCATTT 3749496 36 100.0 34 .................................... AATCAATCTTGACCCAAAAAAAAGGGGCTCAAGT 3749566 36 100.0 33 .................................... AGTCATCTTTTCAGAAAACATCTTATCTGTTAC 3749635 36 100.0 35 .................................... CTTCGGATTGGAGACAGAACTTCGTTTCTAATGCT 3749706 36 100.0 35 .................................... TAGCCGCTCTTTTAGCTTACTCGTCTTATCCATTA 3749777 36 100.0 34 .................................... CAGCGGTACAGCCAGAAGTAGTGCAGCGGGTTCT 3749847 36 100.0 37 .................................... TGCTGGCGGGCCCAAGGGCTGAAGCTAAGACTTGCCG 3749920 36 100.0 36 .................................... CTTTTTAGTCGTTGAGACTTTAACGAAGCAGGCCCC 3749992 36 100.0 33 .................................... ACAATCCTACATTTTGCAAAGGAGGCCCTTTAA 3750061 36 100.0 35 .................................... TCCAAGAGTGGAGCGGCCCATTGACTACGAGGCTG 3750132 36 100.0 34 .................................... AGTCAAAAACAAGCAATTGAAAAAATTGAATCTT 3750202 36 100.0 35 .................................... AGTTAAGCTTTGTCATTGAAATTCCCAATCATTTT 3750273 36 100.0 34 .................................... TTGTCAGCCCATTGTCTGACTTCTTCTTTAGCTC 3750343 36 100.0 34 .................................... TTGCGCTATTGATTTGGAATTGGATAGCACTCAG 3750413 36 100.0 36 .................................... AAGCTGTGAAAGAGGGTATCATTACACTTTGGAGTA 3750485 36 100.0 36 .................................... AACTCTGAGACAAGAAGCATTTGAGGCCAAGCACAA 3750557 36 100.0 35 .................................... CACCTTGGTTCATTTTATCCAAGAAACTACTAACA 3750628 36 100.0 36 .................................... CCCGTTTCTTTGTCTACAGCAGGTAGGTGATATGGG 3750700 36 100.0 34 .................................... TGAATATTGGCCAACCATATTGGCGGCCGCTAAA 3750770 36 100.0 33 .................................... TTTCATCTTTTGCTCCAAAAAGTAAAGAGCAAA 3750839 36 100.0 34 .................................... CTGGAAATAACATTAGCATTAGCTAATGCTGTTT 3750909 36 100.0 34 .................................... TAGCATTCTTCCATTCTGGACTTTCGGGTTCAAA 3750979 36 100.0 34 .................................... TTTACTTTATGCAAGTTAAATTGAGTACATTTCT 3751049 36 100.0 34 .................................... ACTGATCCTGACCAGTAAAACCACCGTCCTCTTC 3751119 36 100.0 35 .................................... TACGGGGGTTTTTAGATTAAGCGTCGACTACCCCT 3751190 36 100.0 37 .................................... AACCATCGTCAGGACAGAGAGTGGAAATTTGAAGCTC 3751263 36 100.0 33 .................................... CTTTCACTTTAGCGGTAAGAATGCCATTATTGG 3751332 36 100.0 36 .................................... TATATAATCGGCCTGCCAAACTGGAAAGCTGGTTTT 3751404 36 97.2 33 ....................G............... CTTTTTGGAAGCTTAAGAAATTACATTAACTAA 3751473 36 97.2 36 ....................G............... TTCCTCTTTTTCAAGAGGAAGAATGACATCATTTAA 3751545 36 97.2 34 ....................G............... GACTTATTACGTAGATGTACTACACAACGAGATA 3751615 36 97.2 34 ....................G............... CTTGCAAATCCTTTTACTGCTAGTTTCAATTGCT 3751685 36 97.2 35 ....................G............... TATTTATGGCCCGAACTGCCATTGCATTGAAGATT 3751756 36 97.2 35 ....................G............... GTTACTCACGTCATTTTAGACGCAGCCTTGACCCA 3751827 36 97.2 34 ....................G............... ATCTTTATCGGATTGTAATATCGGATGTAGATAA 3751897 36 97.2 34 ....................G............... CAATTTACCACCGAAGACGGTAAGCGTTGGACTA 3751967 36 97.2 35 ....................G............... TGTGAGAAGCTCGTAAGTCCTGACAATTTCACAAA 3752038 36 97.2 40 ....................G............... TTGGCAACAAGGCGGTTCTTGCCAGAAATAAGAAACCCTA 3752114 36 97.2 34 ....................G............... TGCTGGCTTTGAGGCGACTTTGCTCGCCCCATAC 3752184 36 97.2 36 ....................G............... GATTTCATAAAGCGTACGAAATCTCTGTTTTTGTGA 3752256 36 97.2 36 ....................G............... TATATAATCGGCCTGCCAAACTGGAAAGCTGGTTTT 3752328 36 97.2 33 ....................G............... CTTTTTGGAAGCTTAAGAAATTACATTAACTAA 3752397 36 97.2 36 ....................G............... TTCCTCTTTTTCAAGAGGAAGAATGACATCATTTAA 3752469 36 97.2 34 ....................G............... CAATTTACCACCGAAGACGGTAAGCGTTGGACTA 3752539 36 97.2 35 ....................G............... TGTGAGAAGCTCGTAAGTCCTGACAATTTCACAAA 3752610 36 97.2 40 ....................G............... TTGGCAACAAGGCGGTTCTTGCCAGAAATAAGAAACCCTA 3752686 36 97.2 34 ....................G............... TGCTGGCTTTGAGGCGACTTTGCTCGCCCCATAC 3752756 36 97.2 36 ....................G............... GATTTCATAAAGCGTACGAAATCTCTGTTTTTGTGA 3752828 36 97.2 36 ....................G............... TATATAATCGGCCTGCCAAACTGGAAAGCTGGTTTT 3752900 36 97.2 33 ....................G............... CTTTTTGGAAGCTTAAGAAATTACATTAACTAA 3752969 36 97.2 36 ....................G............... TTCCTCTTTTTCAAGAGGAAGAATGACATCATTTAA 3753041 36 97.2 34 ....................G............... GACTTATTACGTAGATGTACTACACAACGAGATA 3753111 36 97.2 34 ....................G............... CTTGCAAATCCTTTTACTGCTAGTTTCAATTGCT 3753181 36 97.2 35 ....................G............... TATTTATGGCCCGAACTGCCATTGCATTGAAGATT 3753252 36 97.2 35 ....................G............... GTTACTCACGTCATTTTAGACGCAGCCTTGACCCA 3753323 36 97.2 37 ....................G............... AACAAGTCTGACCATAGAATCCTATTGGCAAAATTGT 3753396 36 97.2 34 ....................G............... CCCTTCATTATTTCCATTCGAATAGGGTGGTATA 3753466 36 80.6 0 ...........T........G........GCC..TA | ========== ====== ====== ====== ==================================== ======================================== ================== 149 36 99.3 35 ATACTAAACCCATTGCAGGCAAAGCAGCATTGAAAC # Left flank : GCGTATATTTGTTGCGGATTCGGGCTGGGGGAAGCCAGCAGAGTTTAAAATTTGTCCGACAGTAAGGGCTGAAAAAATGCGAAAATAGGGGAGCTAGGAGAGGAGCTTTCCTATTTTTTTGTCTGTTGGGAGGGGGGATTTGGGGCTGCCCCTCGCTTTGCTCGGGTCGCTCCACTTCGCAGCTCGCAGGTCTGCTCGGCCCTGCGTCGCTTTGCTCCTTGGTCTGCCGCTTGCGCGGCCCTGCTACGGCAGCTCAGCCTGCGGCGGCTTTGCCGCCTGTAGGGCGCGGAAAGGGGGATGAAATTAAATTAGGAAGTATAGGGGAGAAGTTTTATATTGTGGCAGAAATTAGCGCTAAGAGGAGGAGAAATCTAAATCTTAAAACTTTCTTAAAATGAAAAAAAGGTGTTTGGAGGCTTTGCGGTATATTTTGGAGTTAGATAGCTCTAGTGTCGATCTTAGCTTTCTTATGGCTTTTTAAATTATATGATAGTTTTGCT # Right flank : AATCGCCCAGGGACAAGCCCCTAGGCTAATTCAATGGAGTCAGCCCTAAAGGGCCTCAAATTGTGATGTAGGGTTTTGCTCTGTTGTTATTGCAGAGAAGGACCATATCCAAAGGCCCTCTTTAGAGGGCTGTCTGAAAAAAGCTAGCCTAGGGGCTTGTCCCTAGGTAGCAGAGCAGGCAGATAGCTTTATTAGTCCCTCAACTTTTTCTGTGGAGAGAAGGGAGGGTAAAGTAAATAAAGCGTCTTTTAACGGCTGGGCGGTTTTGGGTCCATGGGCTGAAGCCCATGCTTGTGGGACTATGCAAACTAGCGGGCTAAAGCCCTTGTTTGCTGTTTATTAGAACTCATTATGGGCCGATGGTTTTAACCCATCGGCTCATTTTATTGCGCTTAGTATAGCCTCTTTTGTAGCAGTGGGTTTTAACCCACTGGTTTTCTTATTATATAATCGCTTAGGGGCTTGTCCCTAGGTAGCGGAGCAGGAGGTCGTATGGAGAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATACTAAACCCATTGCAGGCAAAGCAGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.70,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 3828724-3820468 **** Predicted by CRISPRDetect 2.4 *** >NC_016940.1 Saprospira grandis str. Lewin, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 3828723 36 100.0 35 .................................... GATTTCTCCTTTTCCACTGTCGTTAAGAGGGTTAT 3828652 36 100.0 33 .................................... TCGTTCAGGGTACCAAACATGCCCCTTGAAAAC 3828583 36 100.0 35 .................................... AAGCATAGACTTTTTGATTACTTACCCCTGTTTCT 3828512 36 100.0 34 .................................... CAATTAAATACCTCTCTAAAAAGAAGTTTAATAA 3828442 36 100.0 35 .................................... ACGAGACCACAACTGAAACGCAATTGTTTGATCGT 3828371 36 100.0 35 .................................... ATTCCATTGTTCTTTTGTGAACTGAGAAGGGATTT 3828300 36 100.0 36 .................................... TTCTGTATCGGCCTTATAAAAGATTCCGCAATTATC 3828228 36 100.0 36 .................................... TGCATAAACTGAAGAGAATACATTGTAGCTGTGTAA 3828156 36 100.0 36 .................................... TAGTATAAAATAAAAGGTCTCCTCATTCTGCTGGGT 3828084 36 100.0 34 .................................... CTCAAGGTCTTTTTGATTACAAAATCGATAATGA 3828014 36 100.0 35 .................................... TTTTTAGTTTTTAAAGTTAAACCCACTATCAATAC 3827943 36 100.0 36 .................................... GTTGTATTTGGAGATATTATCAATCTTCCAGAAAAA 3827871 36 100.0 33 .................................... CCCTTTTTTTAGTCTTTTTTGAAAGCCTTTTTT 3827802 36 100.0 34 .................................... TATTACCATATCAATTATGTCAGATGTAGCATCT 3827732 36 100.0 37 .................................... TTCGGCTTCGCCGTCGCTTCGCTCTGTTTTGCGGGGG 3827659 36 100.0 34 .................................... TATATATACAATCAGGAGAATTTTCTTTAAATTT 3827589 36 100.0 35 .................................... TTCTTATTTTTTTCAACATAGATAATTTCTTCTTT 3827518 36 100.0 33 .................................... ACTGAAGTTTCATCATAAATTATATTTTTAAGA 3827449 36 100.0 34 .................................... AAAAATAACATGCTCAATGTTTCTTCGAGGTTTA 3827379 36 100.0 35 .................................... TGTATCGGTGGGCGCACTCATGCTGGAATGGTCCC 3827308 36 100.0 36 .................................... AATCATCGCAACCTACATGAAAACCTGATGCTGCTT 3827236 36 100.0 34 .................................... ATTAAAGGCTTTAATCGGCCTTAGAATGTTTTAA 3827166 36 100.0 34 .................................... AAGATGTCTTGAGAGAGTACGAATAACCTCTCAA 3827096 36 100.0 35 .................................... ATCTTCCTCTAAAACGATTCTCTCGGTGGTGCTTG 3827025 36 100.0 35 .................................... GCTCAACGATCGAAGCTTTAGTGCCCGTTCCTTAC 3826954 36 100.0 34 .................................... TGAATAACTAATCCTGATGATGGAAGAGTTACAG 3826884 36 100.0 34 .................................... CCTATATAAACTCCAACTATACAGCGGACCTTAG 3826814 36 100.0 34 .................................... AGCAATTTGCCCCCCTCAAAAAGGTCAATAGCAA 3826744 36 100.0 33 .................................... TTTCCTCGTACTTTTACGGTTCGGTCCAATGCT 3826675 36 100.0 36 .................................... TGTAGAATCTTTAAACATTCTAGAAAACTACGTTAA 3826603 36 100.0 35 .................................... ACAGAAAAGGAGTTTTTTGACTACATTAAGCCTAA 3826532 36 100.0 34 .................................... CTGGTGCTGACCTTGTTTGGAGGCCGGGTAACAA 3826462 36 100.0 35 .................................... TTCAACCCTTTTTCAGCTGCCTTAGACAGCTTTAA 3826391 36 100.0 34 .................................... CACTTTCATAGATATACTTAAATTTTAAGGTATT 3826321 36 100.0 36 .................................... TAGACAAAGGCTAGTGCTTAGTTACCGTATAGGTAG 3826249 36 100.0 35 .................................... ACTGTAGTTTTTGCTTTGGAATCATCAGCTCTCAA 3826178 36 100.0 36 .................................... AGCAACAGCCTTGATAGGATCCTCCACGATCTCTTT 3826106 36 100.0 35 .................................... AAGGAAGTGACGCAGGGCCTGCCTTCTTTTACTAT 3826035 36 100.0 35 .................................... ACGCCGCTCTTAGTGTTCTTCTTGACCTGCGTTTG 3825964 36 100.0 36 .................................... ACCTTTCTTCATATCTTCGTCGATCCAGGTAGTCAT 3825892 36 100.0 33 .................................... AATCTAATGATTTCCAAAGTACAATACTTACCA 3825823 36 100.0 35 .................................... GTCTACATTTGCAGACAAGCTGCTTAAACTCTTCT 3825752 36 100.0 35 .................................... TTTTAATAAACTATTATCAGAAGCTGAAAAATCTA 3825681 36 100.0 33 .................................... CAGGTCCACCCCATCTACAAGCGTAATATATCC 3825612 36 100.0 36 .................................... AGTGTTGTAGGGGCTTAAAAATTGTTTCTGGATCAA 3825540 36 100.0 36 .................................... TTCTGTTTTGCCGTCCGCTTTCAAGAAACGGAAAGC 3825468 36 100.0 39 .................................... TACCTTACCAGATATACCATGTTCTCCAAATTCGAACCA 3825393 36 100.0 37 .................................... TATGCTCCCCACCAATGGCTAAGCCTACCTTAGATAT 3825320 36 100.0 35 .................................... TCAAGTAATCTTCCAGAAGGATATCTCCATATCCT 3825249 36 100.0 35 .................................... AACCTTCGCTATGGACATGCATGTGACCCTAAAGG 3825178 36 100.0 34 .................................... TTGGGGGTGAAACGGCTAAGGACGGGGGGGATGT 3825108 36 100.0 35 .................................... ACCGCAAAACCAACAGCCAAATGAGTAACGAATGT 3825037 36 100.0 35 .................................... TCAATATCGGCCTTAGCCGCCCGAGCCTTAGCCTT 3824966 36 100.0 35 .................................... TTGTTATATAGTTCTTTTTCATAATCTACAAAGAT 3824895 36 100.0 34 .................................... AATCGTGTAGCTCTAGCAATGGAGTATGGCATGT 3824825 36 100.0 36 .................................... TCTACCCCGTAACGCTCAAGGAAAGAGCGCTTGATG 3824753 36 100.0 35 .................................... TTTTACCATCCTCGTTTTTAAATGTGTATTTAGTC 3824682 36 100.0 38 .................................... AGCTAATGGCTACTAATATGCTCGTTCTTCTCCACTTT 3824608 36 100.0 33 .................................... AATTTAACGATGCATAGATCTTGCATAGTATAT 3824539 36 100.0 34 .................................... CGGCGTTCTTTGCTTGGTCTGCATTGGCTAGAGG 3824469 36 100.0 35 .................................... ACGCATGGGATAACATTCTTCCATTCGGGCCAATG 3824398 36 100.0 34 .................................... CGGCGTTCTTTGCTTGGTCTGCATTGGCTAGAGG 3824328 36 100.0 35 .................................... TTGTTATATAGTTCTTTTTCATAATCTACAAAGAT 3824257 36 100.0 34 .................................... AATCGTGTAGCTCTAGCAATGGAGTATGGCATGT 3824187 36 100.0 34 .................................... CGGCGTTCTTTGCTTGGTCTGCATTGGCTAGAGG 3824117 36 100.0 35 .................................... ACGCATGGGATAACATTCTTCCATTCGGGCCAATG 3824046 36 100.0 34 .................................... CGGCGTTCTTTGCTTGGTCTGCATTGGCTAGAGG 3823976 36 100.0 35 .................................... ACGCATGGGATAACATTCTTCCATTCGGGCCAATG 3823905 36 100.0 38 .................................... TGTTCTACTTCTAATAGCAAACGCTCTTGTTTATCGCT 3823831 36 100.0 34 .................................... ATTTATTAATCATTAATACCAAAAGTCATGAGTA 3823761 36 100.0 37 .................................... TTTTAAAGGTAAAAGGTTATGAAGGTCAAATTTATGA 3823688 36 100.0 34 .................................... GCCCAGCCGATTTCGAAACAAAGTTCGAAGACCT 3823618 36 97.2 36 .....C.............................. TCCTCTCTATTCTTCAGCCAAACGCAACCTAGTCGA 3823546 36 100.0 32 .................................... AAAAAGACGGCGTATTTGCTCCGAAGTACCTG 3823478 36 100.0 36 .................................... TTCAGCACCTGTCTCTCTAATATCTAAACGAAGCTG 3823406 36 100.0 37 .................................... GATATACGTGCCCTCTGAATGGATTTGATTGGGTTCT 3823333 36 100.0 36 .................................... AGTTCCAAGCTCTTGTAGATAAACCAATTTCTCTTA 3823261 36 100.0 34 .................................... TTTCGTTGTTAGGGTTTGGCGAACCGAAAAACGG 3823191 36 100.0 36 .................................... TGCAACCGAACCCTGAATTACAGTAAAGCAAAGAAT 3823119 36 100.0 34 .................................... AGTACTCATACTCTTCTAACTCTTCCAATATAGA 3823049 36 100.0 34 .................................... TGTGTAGAGGCTTTTGTACACGAAAATCTTCCTG 3822979 36 100.0 35 .................................... TACATCCATTTCCAACCCAAATTGAAGGCTTTGAG 3822908 36 100.0 36 .................................... TGTGCATTTACACAATTATAAGAAAACGGATGGATA 3822836 36 100.0 35 .................................... TCTGAAAAAGACGCCTTGATCTCGAACTCGTAAAT 3822765 36 100.0 35 .................................... CGTCTCAAATTCTTTATACTGCTTACCCATATTTA 3822694 36 100.0 34 .................................... ACATGAATAAAAGCGCTTGGTATAGTGGTCTCCT 3822624 36 100.0 34 .................................... TTCTTTGAGGCTGAATCTCAGCCTTGGGAGGGCA 3822554 36 100.0 36 .................................... GCCCGCTTAAGGGCGAGAGTGGGGTTAGCCTCCCCT 3822482 36 100.0 35 .................................... GGTTAAAGAAGCAGAAGAACAATATAAATTGGAAC 3822411 36 100.0 35 .................................... AATACCAAGACCCAAAACAAGGTTTATCTGACATT 3822340 36 100.0 36 .................................... TTCGCAGCTCTTCTGCTCTCGATAGGAGAGTAGAAA 3822268 36 100.0 37 .................................... TTTATTTAACCTTGTCTCCACTTATTAACTATTAGAG 3822195 36 100.0 34 .................................... GGGTTTGAATTTACGAACATCAAAGCGAGGACGA 3822125 36 100.0 35 .................................... TTTGTTAGTGGCTCCTACAAATTTACTAACACTGC 3822054 36 100.0 33 .................................... ATACTCTATCATAGATAGGTGTTTGTAATATCA 3821985 36 100.0 34 .................................... ATCTAAGCCGTTGGGGGCGTTTAGGATATTTTCA 3821915 36 100.0 38 .................................... TTTATTGCCTTCTATTTGGCTAAGGACAAATACGAAAT 3821841 36 100.0 35 .................................... TGTTACCTCTAACCCCTCCTTTTCCAGAAGTTCTA 3821770 36 100.0 34 .................................... AACAACTGTACTAATACCTGTATTTCGTTTTTAT 3821700 36 100.0 36 .................................... CCCAATTTGGCGAAGTGGACACGATGATTGCCACAG 3821628 36 100.0 35 .................................... TGGAGAAAGAGATTAGTACTGAGTGGGTGGTTAAC 3821557 36 100.0 34 .................................... TCCCGATGCCGATGAAACCACTCTTCCTGAAGAG 3821487 36 100.0 36 .................................... TTCAGTCCTGCAGGAGTTTCCTGCATGGGACTGGAA 3821415 36 100.0 34 .................................... TTCGTAGAACTTAGCATATACTACTTTTCCTTTC 3821345 36 100.0 34 .................................... AAGTATCTCCTGTGTAAAGCACACATAAACTTGG 3821275 36 100.0 35 .................................... AGAATTTAGGTCGGGTAAGGCCGATTTGTCATTAC 3821204 36 100.0 34 .................................... TACGTATGTCTGGAGAGACACAAAATACTCACAT 3821134 36 100.0 35 .................................... CTTTTAGAAGGATATCTCCATATCCTTCTTCGTCC 3821063 36 100.0 33 .................................... TCCAGTCTCAATTGGGCTAATTCGCTCAAACCT 3820994 36 100.0 35 .................................... GTCTGTTTGTGTGTAATATACTTTTTTGACATGCT 3820923 36 100.0 33 .................................... TCCAGTCTCAATTGGGCTAATTCGCTCAAACCT 3820854 36 100.0 35 .................................... GTCTGTTTGTGTGTAATATACTTTTTTGACATGCT 3820783 36 100.0 35 .................................... ATAATTAGTTTACTCGATTGGGCGAGTATAAACAG 3820712 36 100.0 33 .................................... TCTGAGGGAGGAACTGCTGTTGTCATGTGCGAG 3820643 36 100.0 34 .................................... GCCTTTAGCTTTTCGCCTTCAGCCCATTCTATTT 3820573 36 100.0 34 .................................... CGATATAATTATTATAATTATATTCGACTTCTTC 3820503 36 80.6 0 .............................AAACCCA | ========== ====== ====== ====== ==================================== ======================================= ================== 117 36 99.8 35 ATACTAAACCCTTTGCAGGCGAAGCAGCATTGAAAC # Left flank : GACATGCGTGGATTGAGGGGGCAATCTAAGGAAGCTAGGCGAGTATCTGGCGAAAAAGACCCGCGATTGAACATTGCTGCGGGGGCTGGATTGATTAACAATGGGGCTTCTAAAATACTGGGGAACTTCATGTTAAGTTTGAACAAAATCTCGCATCCGATTCGGTTATTTACCAATGAGCAAGAGGCGATAGATTGGTTATTAGAGATCAAGAAAAAGAACGGGCATTAGCCTAGTTAGCGAAAGAGAGTGGAATAGCGTAGGGGCTATTTCGCTCTTTTTTTTGTTTGTTGTTTTGGGGGGAAATGGCTATATTGGGCTGTAGTTCGGGAGTTTTGGGCTAGCATATATTGGTTTTGGTCTTAGCTTTTACGAATCTTAAAACTTTCTTAAAATGAAAAAAGGGCAGCAAAAGGATTTGCGGTATATTTTTGAGTTACATGACTCTAATATAGGTTGTGGCGTTCTTATGACTTTTTAAATTATATGATAGTTTTACT # Right flank : AAAGGGGCAGCGAATGATTATTCGCTGCCCCTTTTTTTGGCCCGAACCCCTCCCCTAGGGGCAAAAAAAAAGCACGCAAGATGCGTGCTTAGCGGTCTGGACGGGACTCGAACCCGCGACCCCCTGCGTGACAGGCAGGTATTCTAACCAACTGAACTACCAGACCAAATTGGTTATTCCCTCTGGGAACGACACAAATATAGGCGCTCCTTTTGGCTTTTCCAAACCTATTTTTTAACAACAGCTTAAATATAAGAATAACCTGCTGATTTTGAGCAAACTATTTTTTTATTTTTTTTCGGGCCGAAGATAACTGCCAAAACTGAAAAAATAAGTTGTGCGGCCCAGCGCTGCGCAGCAGTGCCGCGAAGCGGCAGACCGAGGCCGCAGGCCGAAGGGCCTTGGGTTGACCCACTTTTAAAAATAAGCTTAAATTAGCTCTAAATCAAGATTTATATGGACAGTACAAATGTATCTTCATTTATGTTAAATAAGCAATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATACTAAACCCTTTGCAGGCGAAGCAGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA //