Array 1 536191-537683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESY010000002.1 Salmonella sp. 32120202201500174SM NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 536191 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 536252 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 536313 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 536374 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 536435 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 536496 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 536557 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 536618 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 536679 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 536740 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 536801 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 536862 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 536923 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 536984 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 537045 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 537106 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 537168 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 537229 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 537290 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 537351 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 537412 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 537473 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 537534 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 537595 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 537656 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 553815-555718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESY010000002.1 Salmonella sp. 32120202201500174SM NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 553815 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 553876 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 553937 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 553998 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 554059 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 554120 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 554181 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 554243 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 554304 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 554365 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 554426 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 554487 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 554548 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 554609 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 554670 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 554731 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 554792 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 554853 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 554914 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 554975 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 555037 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 555098 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [555140] 555140 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 555201 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 555262 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 555323 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 555384 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 555445 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 555506 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 555567 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 555628 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 555689 29 96.6 0 A............................ | A [555715] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //