Array 1 83006-84419 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVQJ01000060.1 Escherichia coli strain sheep40 sheep40_contig_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83006 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 83067 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 83128 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 83189 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 83250 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 83311 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 83372 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 83433 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 83494 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 83555 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 83616 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 83677 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 83738 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 83799 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [83823] Deletion [83840] 83841 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 83902 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 83963 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 84024 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 84085 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 84146 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 84208 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 84269 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 84330 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 84391 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 110992-109865 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVQJ01000064.1 Escherichia coli strain sheep40 sheep40_contig_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110991 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 110930 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 110869 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 110808 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 110747 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 110686 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 110625 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 110564 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 110503 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 110442 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 110381 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 110320 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 110259 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 110198 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 110137 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 110076 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 110015 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 109954 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 109893 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //