Array 1 78902-83346 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKL01000005.1 Akkermansia muciniphila strain BSH05 scaf-5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 78902 31 100.0 34 ............................... AACTGGACCGGGCCCGCGTTTCTGAACAGCCGTC 78967 31 100.0 34 ............................... AAGAATAACCAAATTGTGCAGATTCTACCATATC 79032 31 100.0 34 ............................... CGAAATAAGGGGGTATTATTATTTCCCCTATCCT 79097 31 100.0 34 ............................... CGCAATGCGGGCAACGGCCATTTACGGGGGTTAC 79162 31 100.0 34 ............................... GTCATGATGGATAGTGAGCAGAGCAAGAAAGCCT 79227 31 100.0 34 ............................... TGGCAAAACAGGTGCCAGTGTATATTTATGTGCC 79292 31 100.0 34 ............................... CGGCTCGCAGAATATAGGCTGGAGTTGCCCGTTG 79357 31 100.0 34 ............................... CCGTGGGAGTGCTCCAACTGCTTACGGGTACAGG 79422 31 100.0 35 ............................... AAGACTTGTCGCAAAGGCTTTTTGTGAAGTTTCAG 79488 31 100.0 32 ............................... CTGATAGGCTACCGCAACACTTGCCTAAATCC 79551 31 100.0 34 ............................... TGGCAAAACAGGTGCCAGTGTATATTTATGTGCC 79616 31 100.0 35 ............................... CAAAATTTCCCCCATACAGCGGGCCGTATGAGGAA 79682 31 100.0 33 ............................... CACGGAGGTGGGTTGAGAGAACTGGCTCTTGTC 79746 31 100.0 34 ............................... GACGACGTGCTTAGTGCCGCCACCAAGATTGCTA 79811 31 100.0 33 ............................... TGACCAAGCATGAACATCTTCTTTACACCGCGG 79875 31 100.0 34 ............................... ACCGTTAATGGTATTGTTCACCCATTCGGGAGCA 79940 31 100.0 34 ............................... TGGACAATAGCGGTAATCTTAGCGTTAGCCTTAT 80005 31 100.0 34 ............................... ATGTCTCCATGCCGCATGGCCCAGGCACCATCCC 80070 31 100.0 33 ............................... GAAGGTCTTTAGCGATTGCTTTGCCATCTAAGA 80134 31 100.0 34 ............................... ATCATAGAGTTATCTTGCTTGTGTCAAGTTTGTT 80199 31 100.0 34 ............................... TATTTGTTAAGGTTATAGGGGAGATTGAAAAATG 80264 31 100.0 33 ............................... GGTGAAAGAATGGGGGTTACAAGCTCTCCTTCT 80328 31 100.0 34 ............................... AAACTACGGAACTGATTGCGTAACAGTTTGAGCA 80393 31 100.0 34 ............................... AGGCCAGAGGTAGGCACGATGTCAGCGACAGGGG 80458 31 100.0 34 ............................... CACCTGGGCATTACACGGACCAGAGTAGCTGTCA 80523 31 100.0 36 ............................... TCTATCCACGGGGTCCACGTAATCGGCGTAGGACTG 80590 31 100.0 33 ............................... TACAACTTCGCGGCTGACTTGGAAGCCTCGCGG 80654 31 100.0 34 ............................... ATAAGCTGAAATGGAACGGCTATGTAGTCGCCTT 80719 31 100.0 34 ............................... CCCCCATGAATGCCTCTATAATTGCCCCGGTACG 80784 31 100.0 33 ............................... TATCAGGAGAGTAATTTCTCCAATACATTTCTG 80848 31 100.0 34 ............................... CCATGGTCAGCACCTTGTTGGTAATCTCATGCTG 80913 31 100.0 34 ............................... TCCACCACGCCGGAGTTTCTCTTGTACATGGAGA 80978 31 100.0 34 ............................... CCCTGTTCACCAACGGCGAGATAGGTACGGTGCA 81043 31 100.0 34 ............................... AATGTCGTAGCCGCAGGCGGTAGCATATCCTATG 81108 31 100.0 35 ............................... GTTGTCATGGTTGTGGGTGCGATTATAGGACCGGG 81174 31 100.0 34 ............................... CGGCTTTTTCCACCTTGTCCAGCACGGAGGGCAT 81239 31 100.0 34 ............................... CATTCCGTCCTCCATTTTTGGAGGGGATGAATTG 81304 31 100.0 34 ............................... CCGTTAAAATCCTGCGTGATTTTATGGCTATCAG 81369 31 100.0 33 ............................... TCTTACGCTTCCACTTCTTTCCGTGAAAATTTT 81433 31 100.0 35 ............................... AATGCAAGTCTTTATCTCTTCGGGCCGAACGTTGA 81499 31 100.0 35 ............................... TCCCGTATAGATAGCTTGAACGACAATCGGAACAT 81565 31 100.0 33 ............................... TGATAATAAAAAGTATAAATCAGGTTATGACGC 81629 31 100.0 34 ............................... CAGGTCGGCGAATCCCAGCGGGCGGACCGCGTCA 81694 31 100.0 34 ............................... TCCGGCTACCGACTGGGACCGGCTGCCGGAAACT 81759 31 100.0 34 ............................... CCCGTCCAAACTGTACTGCGCTACTGGTCTAACT 81824 31 100.0 33 ............................... TTTTGCCAAGAGGCAATCCCTGACCATGCGGGA 81888 31 100.0 33 ............................... GCGTTCGCGGCTGTTGGTAGCCTGCCTGGACGT 81952 31 100.0 34 ............................... TTTGCTTTTCGCCGTCGTCATCCAGTCCGTCAGC 82017 31 100.0 34 ............................... GTGAGTGATCGCGTGTTTCGCTCGAATGATTCTA 82082 31 100.0 33 ............................... TATTCGCTTTTGATTTTCATTTATGTATTTCCC 82146 31 100.0 34 ............................... GCCCTGGTGGCATGAATAGCTTAAACACTATACA 82211 31 100.0 34 ............................... CCTGCCCCCACAATCTGCATAACTTCCTCATGTT 82276 31 100.0 34 ............................... GTTCTTCGCTCATAGCAAAAGTCTGATTTTTAAT 82341 31 100.0 34 ............................... CGGATGAAGCGTTTGATGCAATCGGGGATGATGC 82406 31 100.0 34 ............................... TATAATCATTAGCAATTAATCAAAAAAACAAAAG 82471 31 100.0 33 ............................... TATGAGAAACGTTGAATTATGCGTGGTTGCATG 82535 31 100.0 33 ............................... TGTTCGCACTAGCTGCGTGTGCCTCCTACATTA 82599 31 100.0 35 ............................... TCTTCCCGGAAAACCCGTAACCTCAACTCTATCAG 82665 31 100.0 35 ............................... ACGTTATTCATTGTTCGTCAAGTATTTGTAGGCCT 82731 31 100.0 33 ............................... TGTTTCTTCGTAAATCAAGATATGCAGTTTACT 82795 31 100.0 34 ............................... GTGTGCTCCCTGCTAAATTCTACCTTTGGATTGC 82860 31 100.0 34 ............................... TTGCTTGTTTCACCGTAGTATTCTTCATACGGCC 82925 31 100.0 34 ............................... CCGGTACTGTACAGGGGTGATAAAGGTCCACCTG 82990 31 100.0 34 ............................... TATATAAAGATATTCTTCCACAAAGTGGTTGTTA 83055 31 100.0 33 ............................... CGTTTTGTCCCACACAACTACCCCCCGCCAAGT 83119 31 96.8 34 ...................A........... CCGTCGTCGTCCAGTCCGTCGGCCCTAAGTGGGG 83184 31 100.0 34 ............................... TCACGCTCCCCGTGTATCTCCGCCCGCAGCAGGG 83249 31 100.0 34 ............................... AACGGATGCTGATCATTGCTCCCCCGCTGGCTCA 83314 31 83.9 0 ........C....G........G....C..G | G,C [83339,83342] ========== ====== ====== ====== =============================== ==================================== ================== 69 31 99.7 34 GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Left flank : CTCGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACTTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGGCGGCTGCTGATGCCGCAAAACACTTCAAGGCCGCTCCATATTGAATGGAGCGGCTTTTTGTTTTCGGAATGGCAGAGAAGGAAAAAGTTGCTGGACGATAGGCCGCTGACCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATGCTGAACCGCTGATCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGTAGATCGGCGATTCCTGTAAGTCCTTGAAATCAGCAGATTGACATTCCCTCCAATAAAATATAAGGCGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTCAACGCATATCCCCTTCCGCC # Right flank : GGGACACGTTTTGGAAGGTTGTCACACTTGCATGGAAATGTAGATGTGAACATCAAACACCAGCCTTACTAAATGGCATTTCATTAAGTATAGGTTGCTGAGGGAGAATGGACTTGGAGCCGACTTTCTTGGAGTAATAAAGAAAAATAATAGTGAAGCTTGCATCTTTAAAAAGGTAGTTTGTGATATAAATAAACCTTCTCTTCAAGAAGAATTTGTTGTTGAAGTATGGCAATAGAATGTTAGGTTTCCGTTGCATTTTGCATCAAGAGAGGGTTAGACGAAATGATTAGAAAGTGTTTGGAGTCGGAATTGGAAACAATTTATGAAATTATCAATGATTCAGCCGTGGTTTATAAAGACAGGATTCCTACCGACAGATGGAAGGAACCTTACATGCCCGTGGATGAATTAAAGGAGCAGATCAGAGATGGCGTGGTGTTCTATTGTTTTGAAGATAAGGGATGCCTTCTTGGCGTCATGGGGATTCAGGACCGGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 92348-94517 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKL01000005.1 Akkermansia muciniphila strain BSH05 scaf-5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 92348 33 100.0 34 ................................. GTGAACCCTTCGGCCTGCCATACCTCGTCAAACT 92415 33 100.0 34 ................................. CGATAGGTACGACGGATAGCTCCTGGCGTAACGG 92482 33 100.0 34 ................................. ACGTCCTGGCCGTTATTGCCATTGCCGTTGACAA 92549 33 100.0 33 ................................. GGATTGAACTTAAACGCGATAGCATCCTTCGGA 92615 33 100.0 34 ................................. CGCTTCATCCACGAATCCATGGCCCCGGCGATAC 92682 33 100.0 33 ................................. CTCATACAACCCGGTAGCCTATCAGAGCGAACT 92748 33 100.0 33 ................................. TCATCCTCCTGTGGGCCTACCGCGAACTGAACG 92814 33 100.0 33 ................................. CGGTCGATGATTTCATTGACCCACACAGGCCCC 92880 33 100.0 33 ................................. CATGTTTCGGGCAATGGACTTGGCCAAGGCACC 92946 33 100.0 34 ................................. CATGAACCCGGTGCCTCCGGTTACGTCAACAGCA 93013 33 100.0 34 ................................. ATGACCGGATAAGTTTAATTGTCGGAGCTTTGCT 93080 33 100.0 34 ................................. ATTTTCAATCCCCACAGCATCACCTTGAGGTTGG 93147 33 100.0 33 ................................. CCATGTCCTTGGTGGTCAGGGCCTGATACTCCG 93213 33 100.0 34 ................................. CCCAGCGCGAAGTGCATTTAGAATCTTCTCCTGC 93280 33 100.0 34 ................................. ACAAAAATGATGGAAAATAATATTGACAAGCCAG 93347 33 100.0 33 ................................. CATAGCTCACCCCGGAGGTCGCGTCAACGGCTT 93413 33 100.0 34 ................................. CCATGGTCAGCACCTTGTTGGTAATCTCATGCTG 93480 33 100.0 34 ................................. CTATATTGTAACCACTAAGTGCAAGTTGGTAGAG 93547 33 100.0 34 ................................. ACGTAACCGCGCCATTCTTCATGGCTGCGGGCTT 93614 33 100.0 34 ................................. TTCTTTTTCCTTTGCATTGTAGTAAGTCGTTGAT 93681 33 100.0 35 ................................. CCTAAAAATGGACATGTGGAGTCCACCCGCATTGT 93749 33 100.0 34 ................................. CAAAAATATGGCAAGGTTCAGATTCCCCTTCGAG 93816 33 100.0 34 ................................. CGCCTCAAAGCGGAGGGGGACGTCCCCGGTGGGT 93883 33 100.0 34 ................................. ATAATTACCGTCCCCATCACATTTGACATTGAGC 93950 33 100.0 35 ................................. TTCTTCCAATCCGGCTCTGGCCCGGTTCCAGCGTT 94018 33 100.0 34 ................................. TGTGACTATTTGCTTATATATGAGATAGTCGGTT 94085 33 100.0 34 ................................. TTTACGATGGATAATAGTGAGTATTGTGTATTAA 94152 33 100.0 34 ................................. TCATGACACAAGGCAGTCACCTTAGGCTTTTCTG 94219 33 100.0 34 ................................. CAATGAATCCGCACAGGCGGCGGCCTCCCGGAAG 94286 33 100.0 33 ................................. ATCATGATGGATAGTAAGCAGGGCAAGAAAGCC 94352 33 100.0 33 ................................. TGGATATAGGTTTCGTCGATGACATTGCAGGTC 94418 33 100.0 34 ................................. CGTGAGGATCGCCAGCTTTTCGGCGTCGTTTTTG 94485 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 33 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CAGCCCCAGGGCATTAGTGGGAATCAACTTGGAATGTCGCCCTCCGCAAGGAGTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 335976-333279 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKL01000001.1 Akkermansia muciniphila strain BSH05 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 335975 31 100.0 34 ............................... ACCCCACGCCTGCCCCTACTGCGAACGCCTCCCC 335910 31 100.0 34 ............................... GAGAGTTACAGGGCACTTTGCCTGTTTAGTACGC 335845 31 100.0 34 ............................... CTTCGGGGAACAAGGCCAATTTAGCATAGGTGTG 335780 31 100.0 34 ............................... CCGGTTAAAAGCTTGCGTGATTTTATGGCTATCA 335715 31 100.0 34 ............................... CCCTGCGCCCGGTCACCAACAACGACCCGAACAA 335650 31 100.0 34 ............................... AATGACAAAGAAATCGGGACGAGAACCTCCATCC 335585 31 100.0 34 ............................... CTCATACAACCCGGTAGCCTATCAGAGCGAACTC 335520 31 100.0 34 ............................... TGAGAGGCCAGACGGGTGATGAAGCGGCTGTAGG 335455 31 100.0 34 ............................... CGCGTTCTTCGCGCTGAAACTGGCAATCGTAACC 335390 31 100.0 34 ............................... TATCCGCGGTAGCCGTGGTAGCCGTGGGTATCTG 335325 31 100.0 35 ............................... CCAACTTGGGAGTCCGCAAAATCATTTGCCCTCCA 335259 31 100.0 34 ............................... CGTGGATGAGATACGCAAGCTCATGGCCGCCAAG 335194 31 100.0 34 ............................... CATCCGTTCAAATCCGTCCGCGGCATCCGCGTGT 335129 31 100.0 34 ............................... CCTACGTAGTCAGATTAAAGGCTTTAACGGAAGG 335064 31 100.0 33 ............................... CGCCGCCGCGCGTAGGTATCCTCCGCCTGTTCG 335000 31 100.0 35 ............................... ACAACTGATAGTGGTTTTCACCGGGGAACGCGCTT 334934 31 100.0 34 ............................... ATAAGTTGTATGTGGCTAGCTGCTTCAGCGTCAT 334869 31 100.0 35 ............................... TATACGCCGGGTGATGGACCTATAGCTTTCAACCT 334803 31 100.0 34 ............................... GTAACCTACTTCATAGGGAGTAGGAATATGGGGT 334738 31 100.0 34 ............................... AGCGTCAATGTCCATGTCTTCATCATTGTCCCTC 334673 31 100.0 34 ............................... TGTTTGTGGAGACCCTTAGCGGCAAGACCAAAGG 334608 31 100.0 34 ............................... ATTGTATTATGTGGTTAGGTTTATTTATTGTGCC 334543 31 100.0 34 ............................... CGGATTGGATTCAGGCCGTCCCGTAGGGGAAGCT 334478 31 100.0 34 ............................... TGGCGCGTTTCGGTCAGGTTGATCTGGTAGCGCA 334413 31 100.0 34 ............................... TTTTCCTTATCGTTTCTCACAAACCCTTCCGGCA 334348 31 100.0 33 ............................... TGAAGGTGTGCCGCAAGCGAAACAATACAATAA 334284 31 100.0 34 ............................... TTGAACTTCGCAAGGTCCGAGTTGGTGATACGGG 334219 31 100.0 34 ............................... ACGGCATCTGCCTGTTCCCCGTTTTGCCGGAGGA 334154 31 100.0 34 ............................... TCTCCATGGCGTTGCCAAGAACATTTTTCAGGAA 334089 31 100.0 34 ............................... TAATCATATCCCTACTACAACGGTAGGAATTAGA 334024 31 100.0 34 ............................... TGTACTCCAATTTCAGGGAGGATGTAGTTAACGT 333959 31 100.0 34 ............................... AATCGCTTTCCCGCCTTTGGCCTTGCTTGCTCGA 333894 31 100.0 34 ............................... TTGCAAATATAGATAAAGATTAACTATGAATAAG 333829 31 100.0 34 ............................... AAGGAGCTTTTGTTGGTCCTTGTGGAGGGCAAAT 333764 31 100.0 34 ............................... ATATCCAGGTGCCCGCGGATGCTCTCCGCCCCGG 333699 31 100.0 34 ............................... GAGAAAGTCACCCTTGCGGGTATTTGCTCCGGCT 333634 31 100.0 34 ............................... ACAGGCCCGGCGCTGGAACGGCTCATTGACTACC 333569 31 100.0 34 ............................... CACAGAGTGGATATTATAGATATAAAAGTATTAG 333504 31 100.0 33 ............................... TCTTGTTACCTAAGAGGCCCCTACTATGGCACA 333440 31 100.0 34 ............................... CGATAAAAAACAGATACTTTCCGTGTTACTGCAA 333375 31 96.8 34 ........T...................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 333310 31 83.9 0 ....T................A..A....TA | G [333292] ========== ====== ====== ====== =============================== =================================== ================== 42 31 99.5 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGGATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGTAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : GTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTTAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 32863-29072 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKL01000017.1 Akkermansia muciniphila strain BSH05 scaf-17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 32862 31 100.0 34 ............................... GCACAATGTACAATAATGCAAAGTAGAACGAAAA 32797 31 100.0 34 ............................... TAATCATATCCCTACTAAGCTAGTAGGAATTAGG 32732 31 100.0 34 ............................... AGGTAGCGTCCGCTATAATTACCCTACCGAAGGC 32667 31 100.0 33 ............................... AGTGTATTCCATGGGTAAATTCCTTTACTGATT 32603 31 100.0 34 ............................... TTCGTTCATTGTATATTATGGTTAGGTTTTATTT 32538 31 100.0 34 ............................... CGCCTGATGCGGGACTACGGAAAATACAGCGCAG 32473 31 100.0 34 ............................... CGCGGAATCCGGGGATGCCAGGAACCTGACGGAG 32408 31 100.0 34 ............................... GTGTGGAGTTCATTGCCCCACATGGGGCGACTAA 32343 31 100.0 34 ............................... CAATCGGTTTCCTATAACGTAGGCTACGCGGTCG 32278 31 100.0 34 ............................... AAAGGCGGAGTAGGAGTCAACGTTGGCCAGCTCC 32213 31 100.0 34 ............................... GGGCTCCTTGTCATATCCCTCTATGCAGGTGACG 32148 31 100.0 33 ............................... GACAAGTCCCAGGTGAACCGAGCCCTTGCCATG 32084 31 100.0 34 ............................... CGGGGGAACAATGATGACCGGAGAATCTTGTTGT 32019 31 100.0 34 ............................... CCTACCTCAAGCTCTGGCAGTCCTCCAGCGAAGA 31954 31 100.0 33 ............................... CGTGATATAGAAACTGCAACCGCGCCGGGTCAT 31890 31 100.0 34 ............................... TAATACGGAATACCAGCACAAAATCTGCGTGAAG 31825 31 100.0 34 ............................... GGAGACCAGCCACTGAATGAGGGCTGGGACAAGG 31760 31 100.0 35 ............................... TTCAACGACTTGTCGGACGTGTTGCGAGAGTACAA 31694 31 100.0 34 ............................... CTATTGTGGAATACAAACCAACGGGGGTTAGTAG 31629 31 100.0 33 ............................... CCCTAACAGGAAGCCAGTCAGCCAGGATGATGA 31565 31 100.0 33 ............................... CAAGGCATCAATTACGAGGTAGGCACTGGTCTG 31501 31 100.0 34 ............................... TGTTTCAGGTCCACGTTGGAGTCATAGATGGTAT 31436 31 100.0 34 ............................... TCATTTTCAGCTCGACGGGAACCAATATAGGATT 31371 31 100.0 33 ............................... CTATATTGTAACCACTAAGTGCAAGTTGGTAGA 31307 31 100.0 33 ............................... CGGGTAGGTGAAAAAGTCCCATGTCTTAGGTGC 31243 31 100.0 33 ............................... TGTTCTTCGTAATATTGTGCAAGTCCGCTACCC 31179 31 100.0 34 ............................... GTCGAACAGGGCAAGGTGCAAGTGTTCATCTACC 31114 31 100.0 34 ............................... TCCATGCTGAATTCTACCTTCGGATTGCTGGAAA 31049 31 100.0 34 ............................... CTTTGCTACTCCTGCGGGCAGGAACCCGGCAAGG 30984 31 100.0 33 ............................... TATTGGGTTATAGTCAATCATTTTCTTAGTCAA 30920 31 100.0 34 ............................... CGTTCGTGCTAACCATTGTAAAATCAATCAGTCT 30855 31 100.0 34 ............................... CGTCCGCTTCCACGTCGGCTAAATGAAAGGCGTA 30790 31 100.0 33 ............................... TGCAGCGATTGCCGCAGGGCGAGGTTGTTGGCC 30726 31 100.0 35 ............................... TTTCACGCGCTTCTTCCGGCTTAATATCATAGCAG 30660 31 100.0 34 ............................... TTCCTCCTGTTCCGTTTCTGCGGTTTCCGCCCCT 30595 31 100.0 34 ............................... AACGTCCTGCTCAATATCAGAAAGGCACCCCTTG 30530 31 100.0 35 ............................... AAATGACTAAATTAGTTTTTAACGCATCTGATTCT 30464 31 100.0 33 ............................... ACCTCACCATCGGAAATAATCGTGTCGGTCAGG 30400 31 100.0 33 ............................... CCTCCATCAGATCCTCCACCGTCGCGCTTCCGC 30336 31 100.0 34 ............................... CAGGACCCGGACGGCAGGGATTACCTGTCCACAC 30271 31 100.0 34 ............................... CCCCGCTTTAACCTTTTTACACAACCTGACAATG 30206 31 100.0 36 ............................... CAGAAAAAATCACTCCATCCAGGGAGACGGCGTCCC 30139 31 100.0 34 ............................... CCGGCGCCGCGAGCGGGAAAGGCGTCATTACGCC 30074 31 100.0 34 ............................... TACGAAATCCTTCGCAATAATCCGGTCCGCAGGA 30009 31 100.0 34 ............................... CGGACTGCGCAATAACAATCCTGTAGGTAGCGGA 29944 31 100.0 34 ............................... TCTGCGGAGAGCATCATGCGGCCATATCCGCCGC 29879 31 100.0 34 ............................... TTGGGAAAGCTGGAGAAGGGTTGGTGACGGTAAA 29814 31 100.0 34 ............................... AATAACCCATACCCACTGATTCAGATTAATGGAG 29749 31 100.0 33 ............................... ATCTACCTGGATTTCCGCGAGGTGGTGAAGGAA 29685 31 100.0 35 ............................... TTTTTCCCTCTTGACTTTCGTCCCTTCTTTTTGCG 29619 31 100.0 34 ............................... TTCCACGTCCACTTTTTGCGGCTTGCCGTGTCCC 29554 31 100.0 34 ............................... TGTTATCGGATAATCTGTTTTTAGATATTGGCGC 29489 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 29425 31 100.0 34 ............................... CTGGTCTGGTAGCAAGGCAGGTTGGTTTGGAATT 29360 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 29296 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 29232 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 29167 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 29102 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== ==================================== ================== 59 31 99.8 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACTCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //