Array 1 461144-462696 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXY01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain M-9750 NODE_3_length_725702_cov_76.826753, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461144 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 461205 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 461266 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461327 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461388 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461449 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461510 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461571 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461632 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 461693 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461754 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461815 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 461876 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 461937 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 461998 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 462059 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 462120 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 462181 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 462242 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 462303 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 462364 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 462425 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 462486 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462547 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462608 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462669 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 479011-479528 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXY01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain M-9750 NODE_3_length_725702_cov_76.826753, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479011 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 479072 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 479133 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 479194 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 479255 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 479316 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 479377 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 479438 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 479499 29 93.1 0 ............TC............... | A [479526] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //